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In press

Year Citations Links Publication Type
in press

Adam, T.C., A.J. Brooks, S.J. Holbrook, R.J. Schmitt, L. Washburn and G. Bernardi. In Press. How will coral reef fish communities respond to climate-driven disturbances? Insight from landscape-scale perturbations. Oecologia.

Journal Article
in press

Edmunds, P.J. In Press. Is acclimation beneficial to scleractinian corals, Porites spp.? Marine Biology.

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Journal Article
in press

Gowan, J.C., J.S. Tootell and R.C. Carpenter. In Press. The effects of water flow and sedimentation on interactions between massive Porites and algal turf. Coral Reefs.

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Journal Article
in press

Tootell, J.S. and M.A. Steele. In Press. Vermetid gastropods reduce foraging by herbivorous fishes on algae on coral reefs. Coral Reefs.

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Journal Article
in press

Yau A.J., H.S. Lenihan and B.E. Kendall. In Press. Management priorities vary with self-recruitment in harvested sedentary marine populations. Ecological Applications.

Journal Article

2014

Year Citations Links Publication Type
2014

Antoine, D., M. Babin, J.F. Berthon, A. Bricaud, B. Gentili, H. Loisel, S. Maritorena and D. Stramski. 2014. Shedding light on the sea: Andre Morel’s legacy to optical oceanography. Annual Review of Marine Science 6:1-21.

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Journal Article
2014

Comeau, S., P.J. Edmunds, N.B. Spindel and R.C. Carpenter. 2014. Fast coral reef calcifiers are more sensitive to ocean acidification in short-term laboratory incubations. Limnology and Oceanography 59:1081-1091.

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Journal Article
2014

Comeau, S., P.J. Edmunds, N.B. Spindel and R.C. Carpenter. 2014. Diel pCO2 oscillations modulate the response of the coral Acropora hyacinthus to ocean acidification. Marine Ecology Progress Series 501:99-111.

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Journal Article
2014

Comeau, S., R.C. Carpenter and P.J. Edmunds. 2014. Effects of irradiance on the response of the coral Acropora pulchra and the calcifying alga Hydrolithon reinboldii to temperature elevation and ocean acidification. Journal of Experimental Marine Biology and Ecology 453:28-35.

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Journal Article
2014

Dornelas, M., N.J. Gotelli, B. McGill, H. Shimadzu, F. Moyes, C. Sievers and A.E. Magurran. 2014. Assemblage time series reveal biodiversity change but not systematic loss. Science 344:296-299.

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Journal Article
2014

Edmunds, P.J., Y. Nozawa and R.D. Villanueva. 2014. Refuges modulate coral recruitment in the Caribbean and the Pacific. Journal of Experimental Marine Biology and Ecology 454:78-84.

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Journal Article
2014

Hillard, H. and R.C. Carpenter. 2014. Acidification and algae: do they have interactive effects on corals?. In: Proceedings of the Society of Integrative and Comparative Biology. Austin, TX. Integrative and Comparative Biology 54 (Supplement 1):E91-E91.

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Conference Proceedings
2014

Johnson, M., V. Moriarty, and R.C. Carpenter. 2014. Acclimatization of the crustose coraline alga Porolithon onkodes to variable pCO2. PLoS One 9:e87678.

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Journal Article
2014

Lenz, E.A., D. Brown, C. Didden, A. Arnold, and P.J. Edmunds. 2014. The distribution of hermit crabs and their gastropod shells on shallow reefs off St. John, US Virgin Islands. Bulletin of Marine Science 90:681-692.

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Journal Article
2014

Lenz. E.A. 2014. An ecological and physiological assessment of tropical coral reefs to past and predicted disturbances. MS Thesis, California State University Northridge, Northridge, CA.

Thesis
2014

Muller, E.B. and R.M. Nisbet. 2014. Dynamic energy budget modeling reveals the potential of future growth and calcification for the coccolithophore Emiliania huxleyi in an acidified ocean. Global Change Biology 20:2031-2038.

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Journal Article
2014

Padilla-Gamino, J.L. 2014. Kupe and the corals – English/Tahitian print edition. LTER Schoolyard Children’s Book Series. Taylor Trade Publishing; an imprint of Rowman & Littlefield. Lanham, MD. 32pp.

ISBN Book
2014

Padilla-Gamino, J.L. 2014. Kupe and the corals – English electronic edition. LTER Schoolyard Children’s Book Series. Taylor Trade Publishing; an imprint of Rowman & Littlefield. Lanham, MD. 32pp.

Book
2014

Padilla-Gamino, J.L. 2014. Kupe and the corals – French/Paumotu electronic edition. LTER Schoolyard Children’s Book Series. Taylor Trade Publishing; an imprint of Rowman & Littlefield. Lanham, MD. 32pp.

ISBN Book
2014

Padilla-Gamino, J.L. 2014. Kupe and the corals – English/Hawaiian print edition. LTER Schoolyard Children’s Book Series. Taylor Trade Publishing; an imprint of Rowman & Littlefield. Lanham, MD. 32pp.

ISBN Book
2014

Padilla-Gamino, J.L. 2014. Kupe and the corals – English print edition. LTER Schoolyard Children’s Book Series. Taylor Trade Publishing; an imprint of Rowman & Littlefield. Lanham, MD. 32pp.

ISBN Book
2014

Padilla-Gamino, J.L. 2014. Kupe and the corals – French/Tahitian print edition. LTER Schoolyard Children’s Book Series. Taylor Trade Publishing; an imprint of Rowman & Littlefield. Lanham, MD. 32pp.

ISBN Book
2014

Padilla-Gamino, J.L. 2014. Kupe and the corals – English/Spanish print edition. LTER Schoolyard Children’s Book Series. Taylor Trade Publishing; an imprint of Rowman & Littlefield. Lanham, MD. 32pp.

ISBN Book
2014

Padilla-Gamino J.L., L. Hedouin, R.G. Waller, D. Smith, W. Truong and R.D. Gates. 2014. Sedimentation and the reproductive biology of the Hawaiian reef-building coral Montipora capitata. Biological Bulletin 226:8-18.

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2014

Pochon, X., H.M. Putnam and R.D. Gates. 2014. Multi-gene analysis of Symbiodinium dinoflagellates: a perspective on rarity, symbiosis, and evolution. PeerJ 2:e394.

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Journal Article
2014

Poray, A.K. and R.C. Carpenter. 2014. Distributions of coral reef macroalgae in a back reef habitat in Moorea, French Polynesia. Coral Reefs 33:67-76.

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Journal Article
2014

Rivest, E.B. and G.E. Hofmann. 2014. Responses of the metabolism of the larvae of Pocillopora damicornis to ocean acidification and warming. PLoS One 9:e96172.

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2014

Rivest, E.B. 2014. The effects of elevated ocean acidity and temperature on the physiological integrity of the larvae of the cauliflower coral, Pocillopora damicornis. PhD Dissertation, University of California Santa Barbara, Santa Barbara, CA.

Thesis
2014

Stier, A.C., K.M. Hanson, S.J. Holbrook, R.J. Schmitt and A.J. Brooks. 2014. Predation and landscape characteristics independently affect reef fish community organization. Ecology 95:1294-1307.

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Journal Article
2014

Wall, C.B., T.-Y. Fan and P.J. Edmunds. 2014. Ocean acidification has no effect on thermal bleaching in the coral Seriatopora caliendrum. Coral Reefs 33:119-130.

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Journal Article
2014

Zamudio, S.L. 2014. Impacts of temperature-induced maternal effects on larval phenotype, settlement, and post-settlement growth of brooding scleractinian corals. MS Thesis, California State University Northridge, Northridge, CA.

Thesis

2013

Year Citations Links Publication Type
2013

Alldredge, A.L., C.A. Carlson and R.C. Carpenter. 2013. Sources of organic carbon to coral reef flats. Oceanography 26:108-113.

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Journal Article
2013

Alldredge, A.L., S.J. Holbrook, R.J. Schmitt, A.J. Brooks and H. Stewart. 2013. Skeletal growth of four scleractinian corals is not enhanced by in situ mesozooplankton enrichment. Marine Ecology Progress Series 489:143-153.

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Journal Article
2013

Bramanti, L. and P.J. Edmunds. 2013. Demographic models can forcast climate change effects on scleractinian corals: the Pocillopora damicornis case study. In: Proceedings of the Society of Integrative and Comparative Biology. San Francisco, CA. Integrative and Comparative Biology 53 (Supplement 1):E22-E22.

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Conference Proceedings
2013

Brown, A. and R.C. Carpenter. 2013. Water flow mediated oxygen dynamics within massive Porites-algal turf interactions. Marine Ecology Progress Series 490:1-10.

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Journal Article
2013

Brown, D. and P.J. Edmunds. 2013. Long-term changes in the population dynamics of the Caribbean hydrocoral Millepora spp. Journal of Experimental Marine Biology and Ecology 441:62-70.

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Journal Article
2013

Brown, D. B. 2013. Multiple mechanisms of calcification and differences in resource partitioning may determine the response of calcifying cnidarians to ocean acidification. California State University Northridge, Northridge, CA.

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2013

Carr, M.H., D.P. Malone, M.A. Hixon, S.J. Holbrook and R.J. Schmitt. 2013. How SCUBA changed our understanding of nature: underwater breakthroughs in reef fish ecology. Smithsonian Contributions to the Marine Sciences 39:157-167.

pdf Journal Article
2013

Comeau, S., P.J. Edmunds, N.B. Spindel and R.C. Carpenter. 2013. The responses of eight coral reef calcifiers to increasing partial pressure of CO2 do not exhibit a tipping point. Limnology and Oceanography 58:388-398.

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Journal Article
2013

Comeau, S., R.C. Carpenter and P.J. Edmunds. 2013. Effects of feeding and light intensity on the response of the coral Porites rus to ocean acidification. Marine Biology 160:1127-1134.

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Journal Article
2013

Comeau, S., R.C. Carpenter and P.J. Edmunds. 2013. Response to: Coral reef calcification – carbonate, bicarbonate and proton flux under conditions of increasing ocean acidification. Proceedings of the Royal Society B – Biological Sciences 280:20131153.

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Journal Article
2013

Cumbo, V.R., P.J. Edmunds, C.B. Wall and T.-Y. Fan. 2013. Brooded coral larvae differ in their response to high temperature and elevated pCO2 depending on the day of release. Marine Biology 160:2903-2917

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Journal Article
2013

Cumbo, V.R., T.-Y. Fan and P.J. Edmunds. 2013. Effects of exposure duration on the response of Pocillopora damicornis larvae to elevated temperature and high pCO2. Journal of Experimental Marine Biology and Ecology 439:100-107.

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Journal Article
2013

Dufault, A.M., A. Ninokawa, L. Bramanti, V.R. Cumbo, T.-Y. Fan and P.J. Edmunds. 2013. The role of light in mediating the effects of ocean acidification on coral calcification. Journal of Experimental Biology 216:1570-1577.

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Journal Article
2013

Edmunds, P.J. and T.-Y. Fan. 2013. Evidence that high pCO2 affects coral recruits through perturbed protein metabolism. In: Proceedings of the Society of Integrative and Comparative Biology. San Francisco, CA. Integrative and Comparative Biology 53 (Supplement 1):E60-E60.

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Conference Proceedings
2013

Edmunds P.J., V.R. Cumbo and T.-Y. Fan. 2013. Metabolic costs of larval settlement and metamorphosis in the coral Seriatopora caliendrum under ambient and elevated pCO2. Journal of Experimental Marine Biology and Ecology 443:33-38.

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Journal Article
2013

Edmunds, P.J., R.C. Carpenter and S. Comeau. 2013. Understanding the threats of ocean acidification to coral reefs. Oceanography 26:149-152.

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Journal Article
2013

Edmunds, P.J. 2013. Decadal-scale changes in the community structure of coral reefs in St. John, U.S. Virgin Islands. Marine Ecology Progress Series 489:107-123.

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Journal Article
2013

Fabina, N.S., H.M. Putnam, E.C. Franklin, M. Stat and R.D. Gates. 2013. Symbiotic specificity, association patterns, and function determine community responses to global changes: Defining critical research areas for coral-Symbiodinium symbioses. Global Change Biology 19:3306-3316.

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Journal Article
2013

Farrar, C.E., Z.H. Forsman, R.D. Gates, J.A.C. Leong and R.J. Toonen. 2013. Observing the coral symbiome using laser scanning confocal microscopy. Science 339:518.

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2013

Forsman, Z.H., E. Johnston, A.J. Brooks, T. Adam and R.J. Toonen. 2013. Genetic evidence for regional isolation of Pocillopora corals from Moorea. Oceanography 26:153:155.

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Journal Article
2013

Haas, A.F., C.E. Nelson, F. Rohwer, L.Wegley-Kelly, S.D. Quistad, C.A. Carlson, J.J. Leichter, M. Hatay and J.E. Smith. 2013. Influence of coral and algal exudates on microbially mediated reef metabolism. PeerJ 1:e108.

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Journal Article
2013

Han, X. 2013. Herbivore community dynamics and functional compositions in Moorea, French Polynesia. PhD Dissertation, University of California Santa Barbara, Santa Barbara, CA.

pdf Thesis
2013

Hedouin L and R.D. Gates. 2013. Assessing fertilization success of the coral Montipora capitata under copper exposure: does the night of spawning matter? Marine Pollution Bulletin 66:221-224.

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Journal Article
2013

Hench, J.L., and J.H. Rosman. 2013. Observations of spatial flow patterns at the coral colony scale on a shallow reef flat. Journal of Geophysical Research:Oceans 118:1142-1156.

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Journal Article
2013

Hofmann, G.E., C.A Blanchette, E.B. Rivest and L. Kapsenberg. 2013. Taking the pulse of marine ecosystems: The importance of coupling long-term physical and biological observations in the context of global change biology. Oceanography 26:140-148.

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Journal Article
2013

Leichter, J.J., A.L., Alldredge, G. Bernardi, A.J. Brooks, C.A. Carlson, R,C. Carpenter, P.J. Edmunds, M.R. Fewings, K.M. Hanson, J.L. Hench, S.J. Holbrook, C.E. Nelson, R.J. Schmitt, R.J. Toonan, L Washburn and A.S.J. Wyatt. 2013. Biological and physical interactions on a tropical island coral reef: Transport and retention processes on Moorea, French Polynesia. Oceanography 26:52-63.

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Journal Article
2013

Lenz, E.A. and P.J. Edmunds. 2013. Evidence that octocorals are increasing in population density in the Caribbean. In: Proceedings of the Society of Integrative and Comparative Biology. San Francisco, CA. Integrative and Comparative Biology 53 (Supplement 1):E317-E317.

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Conference Proceedings
2013

Lesser, M.P., M. Stat and R.D. Gates. 2013. The endosymbiotic dinoflagellates (Symbiodinium sp.) of corals are parasites and mutualists. Coral Reefs 32:603-611.

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Journal Article
2013

Mayfield, A.B., T.-Y. Fan and C.-S. Chen. 2013. Physiological acclimation to elevated temperature in a reef-building coral from an upwelling environment. Coral Reefs 32:909-921.

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Journal Article
2013

Monismith, S.G., L. M. M. Herdman, S.H. Ahmerkamp, and J.L. Hench, 2013. Wave transformation and wave-driven flow across a steep coral reef. Journal of Physical Oceanography 43:1356-1379.

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Journal Article
2013

Nelson, C.E., S.J. Goldberg, L.W. Kelly, A.F. Haas, J.E. Smith, F. Rohwer, and C.A. Carlson. 2013. Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages. The ISME Journal 7:962-979.

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Journal Article
2013

Nielsen, J.A. 2013. Effects of density on behaviorally-mediated tradeoffs between growth and survivorship. MA Thesis, University of California Santa Barbara, Santa Barbara, CA.

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2013

Padilla-Gamino, J.L., R.R. Bidigare, D.J. Barshis, A. Alamaru, L. Hedouin, X. Hernandez-Pech, F. Kandel, S.L.Soon, M.S. Roth, L.J. Rodrigues, A.G. Grottoli, C. Portocarrero, S.A. Wagenhauser, F. Buttler and R.D. Gates. 2013. Are all eggs created equal? A case study from the Hawaiian reef-building coral Montipora capitata. Coral Reefs 32:137-152.

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Journal Article
2013

Page, H.M., A.J. Brooks, M. Kulbicki, R. Galzin, R.J. Miller, D. Reed, R.J. Schmitt, S.J. Holbrook and C. Koennigs. 2013. Stable isotopes reveal trophic relationships and diet of consumers in temperate kelp forest and coral reef ecosystems. Oceanography 26:180-189.

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Journal Article
2013

Putnam, H.M., A.B. Mayfield, T.-Y. Fan, C.-S. Chen and R.D. Gates. 2013. The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperatures and pCO2. Marine Biology 160:2157-2173.

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Journal Article
2013

Rivest, E.B., C.-S. Chen, T.-Y. Fan, H.-H. Li, P.J. Edmunds and G.E. Hofmann. 2013. Energetic consequences of ocean acidification and warming for coral larvae. In: Proceedings of the Society of Integrative and Comparative Biology. San Francisco, CA. Integrative and Comparative Biology 53 (Supplement 1):E360-E360.

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Conference Proceedings
2013

Siegel, D.A., M.J. Behrenfeld, S. Maritorena, C.R. McClain, D. Antoine, S.W. Bailey, P.S. Bontempi, E.S. Boss, H.M. Dierssen, S.C. Doney, R.E. Eplee Jr., R.H. Evans, G.C. Feldman, E. Fields, B.A. Franz, N.A. Kuring, C. Mengelt, N.B. Nelson, F.S. Patt, W.D. Robinson, J.L. Sarmiento, C.M. Swan, P.J. Werdell, T.K. Westberry, J.G. Wilding and J.A. Yoder. 2013. Regional to global assessments of phytoplankton dynamics from the SeaWiFS mission. Remote Sensing of Environment 135:77-91.

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Journal Article
2013

Smith, J.E., N.N. Price, C.E. Nelson and A.F. Haas. 2013. Coupled changes in oxygen concentration and pH caused by metabolism of benthic coral reef organisms. Marine Biology 160: 2437-2447.

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Journal Article
2013

Stat M, X. Pochon, E.C. Franklin, J.F. Bruno, K.S. Casey, E.R. Selig and R.D. Gates. 2013. The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress. Ecology and Evolution 3:1317-1329.

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Journal Article
2013

Stewart, H.L., N.N. Price, S.J. Holbrook, R.J. Schmitt and A.J. Brooks. 2013. Determinants of the onset and strength of mutualistic interactions between branching corals and associate crabs. Marine Ecology Progress Series 493:155-163.

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Journal Article
2013

Stier, A.C., S.W. Geange, K.M. Hanson and B.M. Bolker. 2013. Predator density and timing of arrival affect reef fish community assembly. Ecology 94: 1057-1068.

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Journal Article
2013

Thompson, A.R., T.C. Adam, K.M. Hultgren and C.E. Thacker. 2013. Ecology and evolution affect network structure in an intimate marine mutualism. The American Naturalist 182:E58-E72.

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Journal Article
2013

Tootell, J. 2013. Processes affecting the grazing, distribution, behavior, and condition of herbivorous fishes on coral reefs. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2013

Wall, C.B. and P.J. Edmunds. 2013. Elevated pCO2 increases ammonium excretion in juvenile colonies of the scleractinian Seriatopora caliendrum. In: Proceedings of the Society of Integrative and Comparative Biology. San Francisco, CA. Integrative and Comparative Biology 53 (Supplement 1):E389-E389.

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Conference Proceedings
2013

Wall, C.B. and P.J. Edmunds. 2013. In situ effects of low pH and elevated HCO3- on juvenile massive Porites spp. in Moorea, French Polynesia. Biological Bulletin 225:92-101.

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2013

Werdell, P.J., B.A. Franz, S.W. Bailey, G.C. Feldman, E. Boss, V.E. Brando, M. Dowell, T. Hirata, S.J. Lavender, Z. Lee, H. Loisel, S. Maritorena, F. Mélin, T.S. Moore, T.J. Smyth, D. Antoine, E. Devred, O. Hembise Fanton d’Andon, and A. Mangin. 2013. Generalized ocean color inversion model for retrieving marine inherent optical properties. Applied Optics 52: 2019-2037.

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Journal Article
2013

Zamudio, S., L. Bramanti and P.J. Edmunds. 2013. Temperature-induced maternal effects on the phenotype of larvae released by the brooding coral Pocillopora damicornis. In: Proceedings of the Society of Integrative and Comparative Biology. San Francisco, CA. Integrative and Comparative Biology 53 (Supplement 1):E233-E233.

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Conference Proceedings

2012

Year Citations Links Publication Type
2012

Adam, T.C. and S. Horii. 2012. Evidence for resource partitioning in two species of obligate cleaner fish. Coral Reefs 31:1149-1154.

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2012

Adam, T.C. 2012. Mutualistic cleaner fish initiate trait-mediated indirect interactions on coral reefs by influencing the behavior of coral predators. Journal of Animal Ecology 81:692-700.

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2012

Beijbom, O, P.J. Edmunds, D.I. Kline, G.B. Mitchell and D. Kriegman. 2012. Automated annotation of coral reef survey images. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition. (CVPR), Providence Rhode Island, June, 2012. 8 Pp.

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2012

Beldade, R., S.J. Holbrook, R.J. Schmitt, S. Planes, D. Malone and G. Bernardi. 2012. Larger female fish contribute disproportionately more to self-replenishment. Proceedings of the Royal Society of London. Series B, Biological Sciences 279:2116-2121.

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2012

Bergsma, G.S. 2012. Epibiotic mutualists alter coral susceptibility and response to biotic disturbance through cascading trait-mediated indirect interactions. Coral Reefs 31:461-469.

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2012

Bergsma, G.S. 2012. Coral mutualists enhance fish abundance and diversity through a morphology-mediated facilitation cascade. Marine Ecology Progress Series 451:151-161.

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2012

Bernardi, G., R. Beldade, S.J. Holbrook and R.J. Schmitt. 2012. Full-sibs in cohorts of newly settled coral reef fishes. PloS One 7(9):e44953.

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2012

Brown, A. 2012. The influence of water flow on mechanisms underlying coral-algal interactions. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2012

Buenau, K.E., Price, N.N., Nisbet, R,M. 2012. Size dependence, facilitation, and microhabitats mediate space competition between coral and crustose coralline algae in a spatially explicit model. Ecological Modelling 237: 23-33.

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2012

Collin, A., J.L. Hench and S. Planes. 2012. A novel spaceborne proxy for mapping coral cover. In Yellowlees, D. and T.P. Hughes (eds.). Proceedings of the 12th International Coral Reef Symposium, Cairns, Australia, 9-13 July 2012. ICRS12 Proceedings 5 Pp.

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2012

Collin, A., and J. L. Hench. 2012. Towards deeper measurements of tropical reefscape structure using the WorldView-2 spaceborne sensor. Remote Sensing 4:1425-1447.

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2012

Colvard, N.B. and P.J. Edmunds. 2012. Macroalgae on shallow tropical reefs reduce the availability of light for use in coral photosynthesis. Bulletin of Marine Sciences 88(4):1019-1033.

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2012

Comeau, S., R.C. Carpenter and P.J. Edmunds. 2012. Coral reef calcifiers buffer their response to ocean acidification using both bicarbonate and carbonate. Proceedings of the Royal Society B – Biological Sciences 280:20122374.

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2012

Cumbo, V.R., T.-Y. Fan and P.J. Edmunds. 2012. Physiological development of brooded larvae from two pocilloporid corals in Taiwan. Marine Biology 159:2853-2866.

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2012

Cumbo, V.R., P.J. Edmunds and T.-Y. Fan. 2012, Scleractinian corals capture zooplankton within days of settlement and metamorphosis. Coral Reefs 31:1155-1155.

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2012

Dufault, A.M., V.R. Cumbo, T.-Y. Fan and P.J. Edmunds. 2012. Effects of diurnally oscillating pCO2 on the calcification and survival of coral recruits. Proceedings of the Royal Society B – Biological Sciences 279:2951-2958.

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2012

Edmunds, P.J., H.M. Putnam and R.D. Gates. 2012. Photophysiological consequences of vertical stratification of Symbiodinium in tissue of the coral Porites lutea. Biological Bulletin 223:226-235.

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2012

Edmunds P.J. 2012. Effect of pCO2 on the growth, respiration, and photophysiology of massive Porites spp. in Moorea, French Polynesia. Marine Biology 159:2149–2160.

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2012

Edmunds, P.J. D.B. Brown and V. Moriarty. 2012. Interactive effects of ocean acidification and temperature on two scleractinian corals from Moorea, French Polynesia. Global Change Biology 18:2173-2183.

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2012

Fabina, N.S., H.M. Putnam, E.C. Franklin, M. Stat and R.D. Gates. 2012. Transmission mode predicts specificity and interaction patterns in coral-Symbiodinium networks. PLoS One 7(9):e44970.

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2012

Franklin, E.C., M. Stat, X. Pochon, H.M. Putnam and R.D. Gates. 2012. GeoSymbio: A hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses. Molecular Ecology Resources 12:369-373.

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Journal Article
2012

Gowan, J. 2012. The effects of water flow and sedimentation on interactions between massive Porites and algal turf. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2012

Jaroensutasinee, K., M. Jaroensutasinee, S. Bainbridge, T. Fountain, S. J. Holbrook and M. Nekrasov. 2012. CREON – Integrating disparate sources of remote coral reef sensor data. In Yellowlees, D. and T.P. Hughes (eds.). Proceedings of the 12th International Coral Reef Symposium, Cairns, Australia, 9-13 July 2012. ICRS12 Proceedings 5 Pp.

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2012

Johnson, M.D. and R.C. Carpenter. 2012. Ocean acidification and warming decrease calcification in the crustose coralline alga Hydrolithon onkodes and increases susceptibility to grazing. Journal of Experimental Marine Biology and Ecology 434:94-101.

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2012

Krueger, T. and R.D. Gates. 2012. Cultivating endosymbionts - host environmental mimics support the survival of Symbiodinium C15 ex hospite. Journal of Experimental Marine Biology and Ecology 413:169-176.

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2012

Leichter, J.J., M.D. Stokes, J.L. Hench, J. Witting and L. Washburn. 2012. The island-scale internal wave climate of Moorea, French Polynesia. Journal of Geophysical Research: Oceans 117:C06008.

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Journal Article
2012

Mayfield, A.B., P.-H. Chan, H.M. Putnam, C.-S. Chen and T.-Y. Fan. 2012. The effects of a variable temperature regime on the physiology of the reef-building coral Seriatopora hystrix: results from a laboratory-based reciprocal transplant. Journal of Experimental Biology 215:4183-4195.

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2012

McCliment, E.A., C.E. Nelson, C.A. Carlson, A.L. Alldredge, J. Witting and L.A. Amaral-Zettler. 2012. An all-taxon microbial inventory of the Moorea coral reef ecosystem. ISME Journal 6:309-319.

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Journal Article
2012

Padilla-Gamino, J.L., X. Pochon, C. Bird, G.T. Concepcion and R.D. Gates. 2012. From parent to gamete: vertical transmission of Symbiodinium (Dinophyceae) ITS2 sequence assemblages in the reef building coral Montipora capitata. PLoS One 7(6): e38440.

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Journal Article
2012

Padilla-Gamino J.L., K.M. Hanson, M. Stat, and R.D. Gates. 2012. Phenotypic plasticity of the coral Porites rus: acclimatization responses to a turbid environment. Journal of Experimental Marine Biology and Ecology 435:71-80.

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Journal Article
2012

Pochon, X., H.M. Putnam, F. Burki and R.D. Gates. 2012. Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium. PLoS One 7(1):e29816.

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Journal Article
2012

Putnam H.M., M. Stat, X. Pochon and R.D. Gates. 2012. Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals. Proceedings of the Royal Society B – Biological Sciences 279:4352-4361.

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Journal Article
2012

Putnam, H. 2012. Resilience and acclimatization potential of reef corals under predicted climate change stressors. PhD Dissertation, University of Hawai'i, Manoa, Manoa, HI.

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2012

Siegel, D.A., D. Antoine, M.J. Behrenfeld, O. Hembise Fanton d’Andon, E. Fields, B.A. Franz, P. Goryl, S. Maritorena, C.R. McClain, M. Wang, and J.A. Yoder. 2012. Global ocean phytoplankton. In Blunden, J. and D.S. Arndt (eds.) State of the Climate in 2011. Bulletin of the American Meteorological Society 93:S107-S110.

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Book Section
2012

Stat, M., A.C. Baker, D.G. Bourne, A.M.S. Correa, Z. Forsman, M.J. Huggett, X. Pochon, D. Skillings, R.J. Toonen, M.J.H. van Oppen and R.D. Gates. 2012. Molecular delineation of species in the coral holobiont. in M. Lesser, editor. Advances in Marine Biology Vol. 63, Amsterdam, The Netherlands. Academic Press. 65 pp.

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Book Section
2012

Wall, C.B. 2012. The effects of ocean acidification and temperature on the physiology of juvenile scleractinian corals. MS Thesis, California State University Northridge, Northridge, CA.

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2012

Yau, A.J-Y and T.-Y. Fan. 2012. Size-dependent photosynthetic performance in the giant clam Tridacna maxima, a mixotrophic marine bivalve. Marine Biology 159:65-75.

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2011

Year Citations Links Publication Type
2011

Adam, T.C. 2011. High quality habitat and facilitation ameliorate competitive effects of prior residents on new settlers. Oecologia 166:121-130.

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Journal Article
2011

Adam, T.C., R.J. Schmitt, S.J. Holbrook, A.J. Brooks, P.J. Edmunds, R.C. Carpenter and G. Bernardi. 2011. Herbivory, connectivity and ecosystem resilience: response of a coral reef to a large-scale perturbation. PLoS One 6(8):e23717.

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Journal Article
2011

Ananthasubramaniam, B., R.M. Nisbet, D. Morse and F.J. Doyle. 2011. Integrate-and-fire models of insolation-driven entrainment of broadcast spawning in corals. Theoretical Ecology, 4:69-85.

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2011

Antoine D., D.A. Siegel, T. Kostadinov, S. Maritorena, N.B. Nelson, B. Gentili, V. Vellucci, and N. Guillocheau. 2011. Variability in optical particle backscattering in contrasting bio-optical oceanic regimes. Limnology and Oceanography 56:955-973.

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2011

Bergsma, G.S. and C.M. Martinez. 2011. Mutualist-induced morphological changes enhance growth and survival of corals. Marine Biology 158:2267-2277.

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Journal Article
2011

Bestelmeyer, B.T., A.M. Ellison, W.R. Fraser, K.B. Gorman, S.J. Holbrook, C.M. Laney, M.O. Ohman, D.P.C. Peters, F.C. Pillsbury, A. Rassweiler, R.J. Schmitt and S. Sharma. 2011. Analysis of abrupt transitions in ecological systems. Ecosphere 2: Article 129.

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2011

Buenau, K., N.N. Price and R.M. Nisbet. 2011. Local interactions drive size dependent space competition between coral and crustose coralline algae. Oikos 120:941-949.

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Journal Article
2011

Cameron, C. 2011. The effects of partial mortality on corals in St. John, U.S. Virgin Islands and Moorea, French Polynesia. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2011

Colvard, N.B and P.J. Edmunds. 2011. Decadal-scale changes in abundance of non-scleractinian invertebrates on a Caribbean coral reef. Journal of Experimental Marine Biology and Ecology 397:153-160.

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2011

Edmunds P.J., H.M. Putnam, R.M. Nisbet and E.B. Muller. 2011. Benchmarks in organism performance and their use in comparative analyses. Oecologia 167:379-390.

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2011

Edmunds, P.J., C.L.M. Ross and C. Didden. 2011. High, but localized recruitment of Montastraea annularis complex in St. John, United States Virgin Islands. Coral Reefs 30:123-130.

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2011

Edmunds, P.J. 2011. Zooplanktivory ameliorates the effects of ocean acidification on the reef coral Porites spp. Limnology and Oceanography 56:2402-2410.

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Journal Article
2011

Edmunds, P.J., V. Cumbo and T.-Y. Fan. 2011. Effects of temperature on the respiration of brooded larvae from tropical reef corals. Journal of Experimental Biology 214:2783-2790.

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2011

Eynaud, Y., Nisbet, R.M. and E.B. Muller. 2011. Impact of excess and harmful radiation on energy budgets in scleractinian corals. Ecological Modelling 222:1315-1322.

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2011

Franklin, E.C., M. Stat, X. Pochon, H.M. Putnam and R.D. Gates. 2011. Rapid development of a hybrid web application for synthesis science of Symbiodinium with Google Apps. In Jones, M. and C. Gries (eds.), Proceedings of the Environmental Information Management Conference 2011. Pp.44-48.

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Conference Proceedings
2011

Gates, R.D. and T.D. Ainsworth. 2011. The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals. Journal of Experimental Marine Biology and Ecology 408:94-101.

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2011

Goldenheim, W.M. and P.J. Edmunds. 2011. Effects of flow and temperature on growth and photophysiology of scleractinian corals in Moorea, French Polynesia. Biological Bulletin 221:270-279.

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2011

Green, D.H. and P.J. Edmunds. 2011. Spatio-temporal variability of coral recruitment on shallow reefs in St. John, US Virgin Islands. Journal of Experimental Marine Biology and Ecology 397:220-229.

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2011

Haas, A.F., C.E. Nelson, L. Wegley-Kelly, C.A. Carlson, F. Rohwer, J.J. Leichter, A. Wyatt and J.E. Smith. 2011. Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity. PLoS One 6(11):e27973.

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2011

Hanson, K. 2011. Planktivorous fish link coral reef and oceanic food webs: causes and consequences of landscape-level patterns in fish behavior, diet and growth. PhD Dissertation, Scripps Institution of Oceanography. University of California San Diego, San Diego, CA.

pdf Thesis
2011

Hofmann, G.E., J.E. Smith, K.S. Johnson, U. Send, L.A. Levin, F. Micheli, A. Paytan, N.N. Price, B. Peterson, Y. Takeshita, P.G. Matson, E.D. Crook, K.J. Kroeker, M.C. Gambi, E.B. Rivest, C.A. Frieder, P.C. Yu and T.R. Martz. 2011. High-frequency dynamics of ocean pH: a multi-ecosystem comparison. PLoS One 6(12):e28983.

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Journal Article
2011

Holbrook, S.J., R.J. Schmitt and A.J. Brooks. 2011. Indirect effects of species interactions on habitat provisioning. Oecologia 166:739-749.

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Journal Article
2011

Jacobson, L.M. 2011. Coral energetics: the metabolic response to resource scarcity and subsequent cost of recovery. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2011

Jaroensutasinee, M., K. Jaroensutasinee, T. Fountain, M. Nekrasov, S. Chumkiew, P. Noonsang, U. Kuhapong and S. Bainbridge. 2011. Coral sensor network at Racha Island, Thailand. In Jones, M. and C. Gries (ed.), Proceedings of the Environmental Information Management Conference 2011. Santa Barbara, CA September 28-29, 2011. Pp 82-86.

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Conference Proceedings
2011

Johnson, M.K., S.J. Holbrook, R.J. Schmitt and A.J. Brooks. 2011. Fish communities on staghorn coral: effects of habitat characteristics and resident farmerfishes. Environmental Biology of Fishes 91:429-448.

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Journal Article
2011

Johnson, M. 2011. The effects of ocean acidification, elevated temperature and herbivory on tropical crustose coralline algae. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2011

Kayal, M., H.S. Lenihan, C. Pau, L. Penin, and M. Adjeroud. 2011. Associational refuges among corals mediate impacts of a crown-of-thorns starfish Acanthaster planci outbreak. Coral Reefs 30:827-837.

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2011

Lenihan, H.S., S.J. Holbrook, R.J. Schmitt and A.J. Brooks. 2011. Influence of corallivory, competition, and habitat structure on coral community shifts. Ecology 92:1959-1971.

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2011

Mayfield, A.B., L.-H. Wang, P.-C. Tang, T.-Y. Fan, Y.-Y. Hsiao, C.-L. Tsai and C.-S. Chen. 2011. Assessing the impacts of experimentally elevated temperature on the biological composition and molecular chaperone gene expression of a reef coral. PLoS One 6(10):e26529.

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2011

Melack, J.M., A.C. Finzi, D. Siegel, S. MacIntyre, C.E. Nelson, A.K. Aufdenkampe and M.L. Pace. 2011. Improving biogeochemical knowledge through technical innovation. Frontiers in Ecology and the Environment 9:37-43.

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2011

Messmer, V., G.P. Jones, P.L. Munday, S.J. Holbrook, R.J. Schmitt and A.J. Brooks. 2011. Habitat biodiversity as a determinant of fish community structure on coral reefs. Ecology 92:2285-2298.

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2011

Mora, C., O. Aburto-Oropeza, A.A. Bocos, P.M. Ayotte, S. Banks, A.G. Bauman, M. Beger, S. Bessudo, D.J. Booth, E. Brokovich, A. Brooks, P. Chabanet, J. Cinner, J. Cortes, J.J. Cruz-Motta, A.C. Magana, E. DeMartini, G.J. Edgar, D.A. Feary, S.C.A. Ferse, A. Friedlander, K.J. Gaston, C. Gough, N.A.J. Graham, A. Green, H. Guzman, M. Kulbicki, Y. Letourneur, A.L. Perez, M. Loreau, Y. Loya, C. Martinez, I. Mascarenas-Osorio, T. Morove, M.-O. Nadon, Y. Nakamura, G. Paredes, N. Polunin, M.S. Pratchett, H.R. Bonilla, F. Rivera, E. Sala, S. Sandin, G. Soler, R. Stuart-Smith, E. Tessier, D.P. Tittensor, M. Tupper, P. Usseglio, L. Vigliola, L. Wantiez, I. Williams, S.K. Wilson and F.A. Zapata. 2011. Global human footprint on the linkage between biodiversity and ecosystem functioning in reef fishes. PloS Biology 9:e1000606.

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2011

Muller, E.B. 2011. Synthesizing units as modeling tool for photosynthesizing organisms with photoinhibition and nutrient limitation. Ecological Modelling 222:637-644.

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Journal Article
2011

Nelson, C.E., A.L. Alldredge, E.A. McCliment, L.A. Amaral-Zettler and C.A. Carlson. 2011. Depleted dissolved organic carbon and distinct bacterial communities in the water column of a rapid-flushing coral reef ecosystem. ISME Journal 5:1374-1387.

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2011

Padilla-Gamino, J.L., T.M. Weatherby, R.G. Waller and R.D. Gates. 2011. Formation and structural organization of the egg-sperm bundle of the scleractinian coral Montipora capita. Coral Reefs 30:371-380.

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Journal Article
2011

Padilla-Gamino, J.L. 2011. Spawning dynamics and parental effects in the Hawaiian scleractinian coral Montipora capitata. PhD Dissertation, University of Hawai'i, Manoa, Manoa, HI.

pdf Thesis
2011

Putnam, H.M. and P.J. Edmunds. 2011. The physiological response of reef corals to diel fluctuations in seawater temperature. Journal of Experimental Marine Biology and Ecology 396:216-223.

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Journal Article
2011

Rosman, J. H., and J. L. Hench. 2011. A framework for understanding drag parameterizations for coral reefs. Journal of Geophysical Research (Oceans) 116:C08025.

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Journal Article
2011

Salerno, J.L., D.R. Reineman, R.D. Gates and M.S. Rappe. 2011. The effect of a sub-lethal temperature elevation on the structure of bacterial communities associated with the coral Porites compressa. Journal of Marine Biology, 2011:Article ID 969173, 9 Pp.

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Journal Article
2011

Siegel, D.A., M.J. Behrenfeld, S. Maritorena, R.T. O’Malley and E. Fields. 2011. Global ocean phytoplankton. In Blunden, J., D.S. Arndt and M.O. Baringer (eds.) State of the Climate in 2010. Bulletin of the American Meteorological Society 92:S105-S108.

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Book Section
2011

Stat, M, and R.D. Gates. 2011. Clade D Symbiodinium in scleractinian corals: a “nugget” of hope, a selfish opportunist, an ominous sign, or all of the above? Journal of Marine Biology, 2011:Article ID 730715, 9 Pp.

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2011

Stat, M., C.E. Bird, X. Pochon, L. Chasqui, L.J. Chauka, G.T. Concepcion, D. Logan, M. Takabayashi, R.J. Toonen and R.D. Gates. 2011. Variation in Symbiodinium ITS2 sequence assemblages among coral colonies. PLoS One 6:e15854.

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Journal Article
2011

Swanson, S. 2011. Species-specific effects of echinoids on coral reef benthic community structure in Moorea, French Polynesia. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2011

Yau, A. J.-Y. 2011. Size-Based Approaches to Modeling and Managing Local Populations: A Case Study Using an Artisanal Fishery for Giant Clams, Tridacna maxima. PhD Dissertation, University of California Santa Barbara, Santa Barbara, CA.

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2010

Year Citations Links Publication Type
2010

Adam, T.C. 2010. Competition encourages cooperation: client fish receive higher quality service when cleaner fish compete. Animal Behaviour 79:1183-1189.

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Journal Article
2010

Adam, T. 2010. Cooperation in a cleaner fish mutualism and its ecological implications. PhD Dissertation, University of California Santa Barbara, Santa Barbara, CA.

pdf Thesis
2010

Ainsworth, T.D., R.V. Thurber and R.D. Gates. 2010. The future of coral reefs - a microbial perspective. Trends in Ecology and Evolution 25:233-240.

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Journal Article
2010

Barshis, D.J., J.H. Stillman, R.D. Gates, R.J. Toonen, L.W. Smith and C. Birkeland. 2010. Protein expression and genetic structure of the coral Porites lobata in an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity? Molecular Ecology 19:1705-1720.

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Journal Article
2010

Baskett, M.L., R.M. Nisbet, C.V. Kappel, P.J. Mumby and S.D. Gaines. 2010. Conservation management approaches to protecting the capacity for corals to respond to climate change: a theoretical comparison. Global Change Biology 16:1229-1246.

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Journal Article
2010

Brainard, R.E., S. Bainbridge, R. Brinkman, C.M. Eakin, J.-P. Gattuso, D. Gledhill, L. Gramer, J. Hendee, R.K. Hoeke, S.J. Holbrook, O. Hoegh-Guldberg, M. Lammers, D. Manzello, M. McManus, R. Moffitt, M. Monaco, J. Morgan, D. Obura, S. Planes, R.J. Schmitt, C. Steinberg, H. Sweatman, O.J. Vetter and K.B. Wong. 2010. An international network of coral reef ecosystem observing systems (I-CREOS). In Proceedings of OceanObs’09: Sustained Ocean Observations and Information for Society (Vol. 2), Venice, Italy, 21-25 September 2009, J. Hall, D.E. Harrison and D. Stammer, editors, ESA Publication WPP-306.

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Book Section
2010

Colvard, N.B and P.J. Edmunds. 2010. The physiological response of tropical reef corals to light reflected from the benthos. In: Proceedings of the Society of Integrative and Comparative Biology. Seattle, WA. Integrative and Comparative Biology 50 (Supplement 1):E33-E33.

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Conference Proceedings
2010

Colvard, N. 2010. Description of the light microenvironment on tropical reefs and its influence on coral physiology. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2010

Edmunds, P.J. and H.S. Lenihan. 2010. Effect of sub-lethal damage to juvenile colonies of massive Porites spp. under contrasting regimes of temperature and water flow. Marine Biology 157:887-897.

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2010

Edmunds, P.J. 2010. Population biology of Porites astreoides and Diploria strigosa on a shallow Caribbean reef. Marine Ecology-Progress Series 418:87-104.

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Journal Article
2010

Edmunds, P.J., J.J. Leichter and M. Adjeroud. 2010. Landscape-scale variation in coral recruitment in Moorea, French Polynesia. Marine Ecology Progress Series 414:75-89.

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Journal Article
2010

Green, D.H., P.J. Edmunds, X. Pochon and R.D. Gates. 2010. The effects of substratum type on the growth, mortality, and photophysiology of juvenile corals in St. John, US Virgin Islands. Journal of Experimental Marine Biology and Ecology 384:18-29.

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Journal Article
2010

Hench J.L. and J.H. Rosman. 2010. Analysis of bottom-track and compass error in a self-contained acoustic Doppler diver navigation console. Journal of Atmospheric and Oceanic Technology 27:1229-1238.

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Journal Article
2010

Hofmann, G.E. and A.E. Todgham. 2010. Living in the now: Physiological mechanisms to tolerate a rapidly changing environment. Annual Review of Physiology 72:127-145.

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Journal Article
2010

Hofmann G.E., Barry J.P., Edmunds P.J., Gates R.D., Hutchins D.A., Klinger T. and M.A. Sewell. 2010. The effect of ocean acidification on calcifying organisms in marine ecosystems: an organism to ecosystem perspective. Annual Review of Ecology, Evolution and Systematics 41:127-147.

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Journal Article
2010

Jacobson, L.M. and P.J. Edmunds. 2010. Long-term changes in the concentration of zooplankton and particulate material over a fringing reef in St. John, US Virgin Islands. Bulletin of Marine Sciences 86:763-772.

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2010

Johnson, M.E.K. 2010. Influence of staghorn coral on associated fish communities. MA Thesis, University of California Santa Barbara, Santa Barbara, CA.

pdf Thesis
2010

Kostadinov, T.S., D.A. Siegel and S. Maritorena. 2010. Global variability of phytoplankton functional types from space: assessment via the particle size distribution. Biogeosciences 7:3239-3257.

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Journal Article
2010

Lenihan, H.S. and P.J. Edmunds. 2010. Response of Pocillopora verrucosa to corallivory varies with environmental conditions. Marine Ecology-Progress Series 409:51-63.

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Journal Article
2010

Leray, M., R. Beldade, S.J. Holbrook, R.J. Schmitt, S. Planes and G. Bernardi. 2010. Allopatric divergence and speciation in coral reef fish: the three-spot Dascyllus, Dascyllus trimaculatus, species complex. Evolution 64:1218-1230.

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2010

Lesser, M. P., M. Slattery, M. Stat, M. Ojimi, R.D. Gates and A. Grottoli. 2010. Photoacclimatization by the coral Montastraea cavernosa in the mesophotic zone: light, food, and genetics. Ecology 91:990-1003.

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2010

Maritorena S., O.H.F. d’Andon, A. Mangin and D.A. Siegel. 2010. Merged satellite ocean color data products using a bio-optical model: characteristics, benefits and issues. Remote Sensing of Environment 114(8):1791-1804.

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Journal Article
2010

Mayfield, A.B., Y-Y Hsiao, T-Y Fan, C-S Chen and R.D. Gates. 2010. Evaluating the temporal stability of stress-activated protein kinase and cytoskeleton gene expression in the Pacific reef corals Pocillopora damicornis and Seriatopora hystrix . Journal of Experimental Marine Biology and Ecology 395:215-222.

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Journal Article
2010

Palmer, C.V. and Gates, R.D. 2010. Skeletal eroding band in Hawaiian corals. Coral Reefs 29:469-469.

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Journal Article
2010

Pochon, X., M. Stat, M. Takabayashi, L. Chasqui, L.J. Chauka, D.D.K. Logan and R.D. Gates. 2010. Comparison of endosymbiotic and free-living Symbiodinium (Dinophyceae) diversity in a Hawaiian reef environment. Journal of Phycology 46:53-65.

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2010

Pochon X. and Gates, R.D. 2010. A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i. Molecular Phylogenetics and Evolution 56:492-497.

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Journal Article
2010

Price, N.N. 2010. Habitat selection, facilitation, and biotic settlement cues affect distribution and performance of coral recruits in French Polynesia. Oecologia 163:747-758.

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Journal Article
2010

Putnam, H.M., P.J. Edmunds and T.-Y. Fan. 2010. Effect of a fluctuating thermal regime on adult and larval reef corals. Invertebrate Biology 129:199-209.

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2010

Thacker, C. E., Thompson, A. R., Adam, T. C., and J. Chen. 2010. Phylogeny and character evolution in the Indo-Pacific genus Ctenogobiops (Gobiiformes:Gobiidae). Ichthyological Research 57:231-239.

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2010

Weersing K., J.L. Padilla-Gamino and B. Bruno. 2010. What microbe are you? The Science Teacher 77:40-43.

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2010

Wilson, S.K., M. Adjeroud, D.R. Bellwood, M.L. Berumen, D. Booth, Y.-M. Bozec, P. Chabanet, A. Cheal, J. Cinner, M. Depczynski, D.A. Feary, M. Gagliano, N.A.J. Graham, A.R. Halford, B.S. Halpern, A.R. Harborne, A.S. Hoey, S.J. Holbrook, G.P. Jones, M. Kulbiki, Y. Letourneur, T.L. De Loma, T. McClanahan, M.I. McCormick, M.G. Meekan, P.J. Mumby, P.L. Munday, M.C. Ohman, M.S. Pratchett, B. Riegl, M. Sano, R.J. Schmitt and C. Syms. 2010. Crucial knowledge gaps in current understanding of climate change impacts on coral reef fishes. Journal of Experimental Biology 213:894-900

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2010

Yancey, P.H., M. Heppenstall, S. Ly, R.M. Andrell, R.D. Gates, V.L. Carter and M. Hagedorn. 2010. Betaines and dimethylsulfoniopropionate as major osmolytes in Cnidaria with endosymbiotic dinoflagellates. Physiological and Biochemical Zoology 83:167-173.

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2009

Year Citations Links Publication Type
2009

Adjeroud, M., F. Michonneau, P.J. Edmunds, Y. Chancerelle, T. Lison de Loma, L. Penin, L. Thibaut, J. Vidal-Dupiol, B. Salvat and R. Galzin. 2009. Recurrent disturbances, recovery trajectories, and resilience of coral assemblages on a South Central Pacific reef. Coral Reefs 28:775-780.

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Journal Article
2009

Alldredge A.L. and J.M. King. 2009. Near-surface enrichment of zooplankton over a shallow back reef: Implications for coral reef food webs. Coral Reefs 28:895-908.

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Journal Article
2009

Baskett, M.L., S.D. Gaines and R.M. Nisbet. 2009. Symbiont diversity may help coral reefs survive moderate climate change. Ecological Applications 19:3-17.

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2009

Beldade, R., S.J. Holbrook, R.J. Schmitt, S. Planes and G. Bernardi. 2009. Isolation and characterization of eight polymorphic microsatellite markers from the orange-fin anemonefish, Amphiprion chrysopterus. Conservation Genetics Resources 1: 333-335.

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Journal Article
2009

Bergsma, G. 2009. Tube-dwelling coral symbionts induce significant morphological change in Montipora. Symbiosis 49:143-150.

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Journal Article
2009

Bergsma, G. 2009. Ecological effects of finger-forming coral symbionts. PhD Dissertation, University of California Santa Barbara, Santa Barbara, CA.

pdf Thesis
2009

Buenau, K.E. 2009. The shifting landscapes of competition: Modeling the roles of space, size, and facilitation in marine benthic communities. PhD Dissertation, University of California Santa Barbara, Santa Barbara, CA.

pdf Thesis
2009

Chan, Y.L., X. Pochon, M.A. Fisher, D. Wagner, G.T. Concepcion, S. Kahng, R.J. Toonen and R.D. Gates. 2009. Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris. BMC Ecology 9:21.

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Journal Article
2009

Edmunds, P.J. 2009. Effect of acclimatization to low temperature and reduced light on the response of reef corals to elevated temperature. Marine Biology 156:1797-1808.

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2009

Ferrier, G.A. and R.C. Carpenter. 2009. Subtidal benthic heterogeneity: flow environment modification and impacts on marine algal community structure and morphology. Biological Bulletin 217:115-129.

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2009

Fitt, W.K., R.D. Gates, O. Hoegh-Guldberg, J.C. Bythell, A. Jatkar, A.G. Grottoli, M. Gomez, P. Fisher, T.C. LaJeunesse, O. Pantos, R. Iglesias-Prieto, D.J. Franklin, L.J. Rodrigues, J.M. Torregiani, R. van Woesik and M.P. Lesser. 2009. Response of two species of Indo-Pacific corals, Porites cylindrica and Stylophora pistillata, to short term thermal stress: the host does matter in determining the tolerance of corals to bleaching. Journal of Experimental Marine Biology and Ecology 373:102-110.

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2009

Fountain, T., S. Tilak, P. Shin, S. Holbrook, R.J. Schmitt, A. Brooks, L. Washburn and D. Salazar. 2009. Digital Moorea cyberinfrastructure for coral reef monitoring. Proceedings of 5th International Conference on Intelligent Sensors, Sensor Networks and Information Processing (ISSNIP) 2009. Melbourne, Australia. IEEE Conferences Pp. 243-248.

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Conference Proceedings
2009

Goldenheim, W.M. 2009. The effects of flow and temperature over multiple time scales on scleractinian growth and photo-physiology in Moorea, French Polynesia. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2009

Hedouin, L., A.J. Reichelt-Brushett and R.D. Gates. 2009. Assessment of metals and a metalloid in sediments from Hawaiian coral reef ecosystems. Marine Pollution Bulletin 58:1759-1765.

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2009

Kane, C.N., A.J. Brooks, S.J. Holbrook and R.J. Schmitt. 2009. The role of microhabitat preference and social organization in determining the spatial distribution of a coral reef fish. Environmental Biology of Fishes 84:1-10.

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2009

Leray, M., R. Beldade, S.J. Holbrook, R.J. Schmitt, S. Planes and G. Bernardi. 2009. Isolation and characterization of 13 polymorphic nuclear microsatellite primers for the widespread Indo-Pacific three-spot damselfish, Dascyllus trimaculatus, and closely related D. auripinnis. Molecular Ecology Resources 9:213-215.

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2009

Mayfield, A.B., M.B. Hirst and R.D. Gates. 2009. Gene expression normalization in a dual-compartment system: a real-time quantitative polymerase chain reaction protocol for symbiotic anthozoans. Molecular Ecology Resources 9:462-470.

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Journal Article
2009

Muehllehner N. and P.J. Edmunds. 2009. Effects of ocean acidification and increased temperature on skeletal growth of two scleractinian corals, Pocillopora meandrina and Porites rus. Proceedings of the 11th International Coral Reef Symposium ICRS11 Proceedings Pp. 57-61.

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2009

Muller, E.B., F.J. Doyle, R.M. Nisbet, P. Edmunds and S. Kooijman. 2009. Dynamic energy budgets of syntropic symbiotic relationships between heterotrophic hosts and photoautotrophic symbionts. Comparative Biochemistry and Physiology A – Molecular and Integrative Physiology (Supplement) 153A:S145-S145.

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2009

Muller, E.B., S.A.L.M. Kooijman, P.J. Edmunds, F.J. Doyle and R.M. Nisbet. 2009. Dynamic energy budgets in syntrophic symbiotic relationships between heterotrophic hosts and photoautotrophic symbionts. Journal of Theoretical Biology 259:44-57.

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2009

Olson, N.D., T.D. Ainsworth, R.D. Gates and M. Takabayashi. 2009. Diazotrophic bacteria associated with Hawaiian Montipora corals: diversity and abundance in correlation with symbiotic dinoflagellates. Journal of Experimental Marine Biology and Ecology 371:140-146.

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2009

Palmer, C.V., M.S. Roth and R.D. Gates. 2009. Red fluorescent protein responsible for pigmentation in trematode-infected Porites compressa tissues. Biological Bulletin 216:68-74.

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2009

Poray, A.K. 2009. Spatial escape at a physiological cost: consequences for coral reef macroalgae inhabiting refugia from herbivores. MS Thesis, California State University Northridge, Northridge, CA.

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2009

Putnam, H.M. and P.J.Edmunds. 2009. Responses of coral hosts and their algal symbionts to thermal heterogeneity. Proceedings of the 11th International Coral Reef Symposium ICRS11 Proceedings Pp. 393-397.

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2009

Schmitt, R.J., S.J. Holbrook, A.J. Brooks and J.C.P. Lape. 2009. Intraguild predation in a structured habitat: distinguishing multiple-predator effects from competitor effects. Ecology 90:2434-2443.

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2009

Spitler, M.I. 2009. Factors influencing the distribution and abundance of the dominant macroalgal species on coral reefs in Moorea, French Polynesia. MS Thesis, California State University Northridge, Northridge, CA.

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2009

Stat, M., X. Pochon, R.O.M. Cowie and R.D. Gates. 2009. Specificity in communities of Symbiodinium in corals from Johnston Atoll. Marine Ecology Progress Series 386:83-96.

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2009

Stier, A.C., M.A. Steele and A.J. Brooks. 2009. Coral reef fishes use crown-of-thorns seastar as habitat. Coral Reefs 28:227.

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2009

Van Oppen, M.J.H., J.A. Leong and R.D. Gates. 2009. Coral-virus interactions: a double-edged sword? Symbiosis 47:1-8.

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2008

Year Citations Links Publication Type
2008

Edmunds, P.J. and R.D. Gates. 2008. Acclimatization in tropical reef corals. Marine Ecology Progress Series 361:307-310.

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2008

Edmunds, P.J. 2008. Differential effects of high temperature on the respiration of juvenile Caribbean corals. Bulletin of Marine Science 83:453-464.

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2008

Edmunds, P.J. 2008. The effects of temperature on the growth of juvenile scleractinian corals. Marine Biology 154:153-162.

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2008

Green, D.H., P.J. Edmunds and R.C. Carpenter. 2008. Increasing relative abundance of Porites astereoides on Caribbean reefs mediated by an overall decline in coral cover. Marine Ecology Progress Series 359:1-10.

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2008

Hench, J.L., J.J. Leichter and S.G. Monismith. 2008. Episodic circulation and exchange in a wave-driven coral reef and lagoon system. Limnology and Oceanography 53:2681-2694.

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2008

Holbrook, S.J., A.J. Brooks, R.J. Schmitt and H.L. Stewart. 2008. Effects of sheltering fishes on growth of their host corals. Marine Biology 155:521-530.

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2008

Holbrook, S.J., R.J. Schmitt and A.J. Brooks. 2008. Resistance and resilience of a coral reef fish community to changes in coral abundance. Marine Ecology Progress Series 371:263-271.

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2008

Lenihan, H.S., M. Adjeroud, M. Kotchen, J. Hench and T. Nakamura. 2008. Reef structure regulates small-scale spatial variation in coral bleaching. Marine Ecology Progress Series 370:127-141.

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2008

Lison de Loma, T., C.W. Osenberg, J.S. Shima, Y. Chancerelle, N. Davies, A.J. Brooks and R. Galzin. 2008. A framework for assessing impacts of marine protected areas in Moorea (French Polynesia). Pacific Science 62:431-441.

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2008

Manning, M.M. and R.D. Gates. 2008. Diversity in populations of free-living Symbiodinium from a Caribbean and Pacific reef. Limnology and Oceanography 53:1853-1861.

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2008

Morrow, K.M. and R. Carpenter. 2008. Shallow kelp canopies mediate macroalgal composition: effects on the distribution and abundance of Corynactis californica (Corallimorpharia). Marine Ecology Progress Series 361:119-127.

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2008

Morrow, K.M. and R.C. Carpenter. 2008. Macroalgal morphology mediates particle capture by the corallimorpharian Corynactis californica. Marine Biology 155:273-280.

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2008

Muehllehner, N. 2008. Growth and morphology in Acropora under increasing carbon dioxide and the effect of increased temperature and carbon dioxide on the photosynthesis and growth of Porites rus and Pocillopora meandrina. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2008

Price, N.N. 2008. Structuring processes for benthic communities: Habitat selection, facilitation, and competition on a coral reef. PhD Dissertation, University of California Santa Barbara, Santa Barbara, CA.

pdf Thesis
2008

Putnam, H.M., P.J. Edmunds and T.-Y. Fan. 2008. Effect of temperature on the settlement choice and photophysiology of larvae from the reef coral Stylophora pistillata. Biological Bulletin 215:135-142.

pdf Journal Article
2008

Putnam, H.M. 2008. The effects of temperature fluctuations on coral physiology. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2008

Rosman, J.H., J.L. Hench, J.R. Koseff and S.G. Monismith. 2008. Extracting Reynolds stresses from acoustic doppler current profiler measurements in wave-dominated environments. Journal of Atmospheric and Oceanic Technology 25:286-306.

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2008

Skoog, A, A.L. Alldredge, U. Passow, J. Dunne and J. Murray. 2008. Neutral aldoses as source indicators for marine snow. Marine Chemistry 108:195-206.

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Journal Article
2008

Stat, M., E. Morris and R.D. Gates. 2008. Functional diversity in coral-dinoflagellate symbiosis. Proceedings of the National Academy of Science 105:9256-9261.

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Journal Article
2008

Stat, M. and R.D. Gates. 2008. Vectored introductions of marine endosymbiotic dinoflagellates into Hawaii. Biological Invasions 10:579-583.

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Journal Article

2007

Year Citations Links Publication Type
2007

Apprill, A.M. and R.D. Gates. 2007. Recognizing diversity in coral symbiotic dinoflagellate communities. Molecular Ecology 16:1127-1134.

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2007

Apprill, A.M., R.R. Bidigare and R.D. Gates. 2007. Visibly healthy corals exhibit variable pigment concentrations and symbiont phenotypes. Coral Reefs 26:387-397.

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Journal Article
2007

Brooks, A.J., S.J. Holbrook and R.J. Schmitt. 2007. Patterns of microhabitat use by fishes in the patch-forming coral Porites rus. The Raffles Bulletin of Zoology (Supplement) 14:227-236.

pdf Journal Article
2007

Buenau, K.E., A. Rassweiler and R.M. Nisbet. 2007. The effects of landscape structure on space competition and alternative stable states. Ecology 88:3022-3031.

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Journal Article
2007

Carpenter, R.C. and S.L. Williams. 2007. Mass transfer limitation of photosynthesis of coral reef algal turfs. Marine Biology 151:435-450.

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Journal Article
2007

Edmunds, P. 2007. Evidence for a decadal-scale decline in the growth rates of juvenile scleractinian corals. Marine Ecology-Progress Series 341:1-13.

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Journal Article
2007

Elahi, R. and P.J. Edmunds. 2007. Determinate growth and the scaling of photosynthetic energy intake in the solitary coral Fungia concinna (Verrill). Journal of Experimental Marine Biology and Ecology 349:183-193.

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Journal Article
2007

Haring, R.N. and R.C. Carpenter. 2007. Habitat-induced morphological variation influences photosynthesis and drag on the marine macroalga Pachydictyon coriaceum. Marine Biology 151:243-255.

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Journal Article
2007

Hoegh-Guldberg, O., G. Muller-Parker, C.B. Cook, R.D. Gates, E. Gladfelter, R.K. Trench and V. Weiss. 2007. Len Muscatine (1932-2007) and his contributions to the understanding of algal-invertebrate endosymbiosis. Coral Reefs 26:731-739.

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Journal Article
2007

Holbrook, S.J., R.J. Schmitt, A.J. Brooks, T. Margalith, J. Burnsed, K. Seydel and H. Masui. 2007. The use of LED light lures to enhance larval settlement of coral reef fish. Pages 326-338 in T. Murata, editor. State of the Art: High Power LED Application Practices, Technical Information Institute Co. Ltd., Japan.

pdf Book Section
2007

Leggat, W., T.A. Ainsworth, J.C. Bythell, S. Dove, R.D. Gates, O. Hoegh-Guldberg, R. Iglesias-Prieto and D. Yellowlees. 2007. The hologenome theory disregards the coral holobiont. Nature Reviews Microbiology 5(10) DOI: 10.1038/nrmicro1635-c1.

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Journal Article
2007

Leichter, J.J. 2007. Internal waves. Pages 637-639 in M.W. Denny and S.D. Gaines, editors. Encyclopedia of Tidepools and Rocky Shores, University of California Press, Berkeley, CA, 705 pp.

pdf Book Section
2007

Lesser, M.P., J.C. Bythell, R.D. Gates, R.W. Johnstone and O. Hoegh-Guldberg. 2007. Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data. Journal of Experimental Marine Biology and Ecology 346:36-44.

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Journal Article
2007

Maheigan, M.E. 2007. Spatial scale of morphological variation of the corals Pocillopora verrucosa and Porites porites. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2007

Mayfield, A.B. and R.D. Gates. 2007. Osmoregulation in anthozoan-dinoflagellate symbiosis. Comparative Biochemistry and Physiology, Part A 147:1-10.

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Journal Article
2007

Ohlmann, C., P. White, L. Washburn, E. Terrill, B.M. Emery and M. Otero. 2007. Interpretation of coastal HF radar derived surface currents with high resolution drifter data. Journal of Atmospheric and Oceanic Technology 24:666-680.

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Journal Article
2007

Padilla-Gamino, J.L. and R.C. Carpenter. 2007. Thermal ecophysiology of Laurencia pacifica and Laurencia nidifica (Ceramiales, Rhodophyta) from tropical and warm-temperate regions. Journal of Phycology 43:686-692.

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Journal Article
2007

Padilla-Gamino, J.L. and R.C. Carpenter. 2007. Seasonal acclimatization of Asparagopsis taxiformis from different biogeographic regions. Limnology and Oceanography 52:833-842.

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Journal Article
2007

Penin, L., M. Adjeroud, M. Schrimm and H.S. Lenihan. 2007. High spatial variability in coral bleaching around Moorea (French Polynesia): patterns across locations and water depths. Comptes Rendus Biologies 330:171-181.

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Journal Article
2007

Schmitt, R.J. and S.J. Holbrook. 2007. Predicting the magnitude of temporal variation in young-of-year class strength of surfperch (Teleostei: Embiotocidae). The Raffles Bulletin of Zoology (Supplement) 14:155-160.

pdf Journal Article
2007

Schmitt, R.J. and S.J. Holbrook. 2007. The scale and cause of spatial heterogeneity in the strength of temporal density dependence. Ecology 88:1241-1249.

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Journal Article
2007

Stewart, H.L., C.E. Payri and M.A.R. Koehl. 2007. The role of buoyancy in mitigating reduced light in macroalgal aggregations. Journal of Experimental Marine Biology and Ecology 343:11-20.

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Journal Article
2007

Talmage, S.C. 2007. Variation in abundance and carbon allocation for Sargassum mangarevense across gradients in herbivory and hydrodynamic exposure in Moorea, French Polynesia. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2007

Washburn, L. 2007. Coastal Currents. Pages 168-172 in M.W. Denny and S.D. Gaines, editors. Encyclopedia of Tidepools and Rocky Shores, University of California Press, Berkeley, CA, 705 pp.

pdf Book Section

2006

Year Citations Links Publication Type
2006

Brooks, A.J. 2006. Digital Moorea: The implementation of a wireless sensor network for the monitoring of coral reefs. Proceedings of the Workshop on the Adoption of Sensor Networks by Coastal Managers. Pp. 11-16.

pdf Conference Proceedings
2006

Bruno, J.F., S.C. Lee, J.S. Kertesz, R.C. Carpenter, Z.T. Long and J.E. Duffy. 2006. Partitioning the effects of algal species identity and richness on benthic marine primary production. Oikos 115:170-178.

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Journal Article
2006

Carpenter, R.C. and P.J. Edmunds. 2006. Local and regional scale recovery of Diadema promotes recruitment of scleractinian corals. Ecology Letters 9:271-280.

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Journal Article
2006

Holbrook, S.J., A.J. Brooks and R.J. Schmitt. 2006. Relationships between live coral cover and reef fishes: implications for predicting effects of environmental disturbances. Proceedings of the 10th International Coral Reef Symposium ICRS10 Proceedings Pp. 241-249.

pdf Conference Proceedings
2006

Kane, C. 2006. Habitat preference, social behavior and patterns of abundance in the coral reef fish Paracirrhites arcatus. MS Thesis, University of California Santa Barbara, Santa Barbara, CA.

pdf Thesis
2006

Ridgway, T. and R.D. Gates. 2006. Why are there so few genetic markers available for coral population analyses? Symbiosis 41:1-7.

pdf Journal Article
2006

Schmitt, R.J. and S.J. Holbrook. 2006. Developmental delays, recruitment storage and adult attrition rates in local populations of a tropical damselfish. Proceedings of the 10th International Coral Reef Symposium ICRS10 Proceedings Pp. 232-240.

pdf Conference Proceedings
2006

Stewart, H.L. 2006. Morphological variation and phenotypic plasticity of buoyancy in the macroalga Turbinaria ornata across a barrier reef. Marine Biology 149:721-730.

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Journal Article
2006

Stewart, H.L. 2006. Ontogenetic changes in buoyancy, breaking strength, extensibility, and reproductive investment in a drifting macroalga Turbinaria ornata (Phaeophyta). Journal of Phycology 42:43-50.

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Journal Article
2006

Stewart, H.L. 2006. Hydrodynamic consequences of flexural stiffness and buoyancy for seaweeds: a study using physical models. Journal of Experimental Biology 209:2170-2181.

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Journal Article
2006

Stewart, H.L., S.J. Holbrook, R.J. Schmitt and A.J. Brooks. 2006. Symbiotic crabs maintain coral health by clearing sediments. Coral Reefs 25:609-615.

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Journal Article
2006

Thompson, A.R., R.M. Nisbet and R.J. Schmitt. 2006. Dynamics of mutualist populations that are demographically open. Journal of Animal Ecology 75:1239-1251.

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Journal Article
2006

Van Oppen, M.J.H. and R.D. Gates. 2006. Conservation genetics and the resilience of reef-building corals. Molecular Ecology 15:3863-3883.

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Journal Article

2005

Year Citations Links Publication Type
2005

Elahi, R. 2006. Effects of age and size on the growth and physiology of scleractinian corals. MS Thesis, California State University Northridge, Northridge, CA.

pdf Thesis
2005

Holbrook, S.J. and R.J. Schmitt. 2005. Growth, reproduction and survival of a tropical sea anemone (Actiniaria): benefits of hosting anemonefish. Coral Reefs 24:67-73.

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Journal Article
2005

Lape, J.C.P. 2005. Factors influencing the quality of a refuge for coral reef fish: effects of microhabitat setting, size and inhabitants. MS Thesis, University of California Santa Barbara, Santa Barbara, CA.

Thesis
2005

Maritorena, S. and D.A. Siegel. 2005. Consistent merging of satellite ocean color data sets using a bio-optical model. Remote Sensing of Environment 94:429-440.

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Journal Article
2005

Siegel, D.A., S. Maritorena, N.B. Nelson, M.J. Behrenfeld and C.R. McClain. 2005. Colored dissolved organic matter and its influence on the satellite-based characterization of the ocean biosphere. Geophysical Research Letters 32:L20605.

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Journal Article
2005

Siegel, D.A., S. Maritorena and N.B. Nelson. 2005. Independence and interdependencies among global ocean color properties: reassessing the bio-optical assumption. Journal of Geophysical Research 110:C07011.

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Journal Article
2005

Thompson, A.R. 2005. Dynamics of demographically open mutualists: immigration, intraspecific competition, and predation impact goby populations. Oecologia 143:61-69.

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DOI
Journal Article

Posters

Posters are listed separately.

Select one of the links below to download a copy of the MCR bibliography in either EndNote Export or Microsoft Word format.

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MCR_LTER_Publications.txt Complete bibliography of MCR LTER publications available in EndNote Export Format.
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MCR_LTER_Current_Publications.doc Microsoft Word document format of bibliography.

How to obtain MCR LTER publications

Publication of MCR LTER site data and findings in peer-reviewed journals, book chapters, conference proceedings and graduate student theses and dissertations represents one of the principal modes by which MCR LTER site science is made available to both the scientific community and the larger, general public. MCR LTER site affiliated investigators may download any publication from the MCR LTER Publications database after supplying their internal site password by clicking on the pdf link to the right of each citation. Non-MCR LTER affiliated readers wishing to read MCR LTER publications should click on the DOI link to the right of the citation. DOI links will connect the reader to the appropriate website maintained by the publisher for that citation. In most cases, the journal website will provide the abstract of the requested citation to the reader for free. If a reader desires a copy of a MCR LTER publication in its entirety and cannot access the full publication using the publishing journal's website, please send a request to Dr. Andrew Brooks and a pdf copy of the desired publication will be e-mailed to you. Please make sure that all e-mails contain the full citation for any requested publication. U.S. copywrite laws prohibit the MCR LTER site from making many MCR LTER site publications directly available to members of the public without the publishing journals explicit permission.

 

 
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