Alldredge, A.L., S.J. Holbrook, R.J. Schmitt, A.J. Brooks and H. Stewart. 2013. Skeletal growth of four scleractinian corals is not enhanced by in situ mesozooplankton enrichment. Marine Ecology Progress Series 489:143-153.
Comeau, S., P.J. Edmunds, N.B. Spindel and R.C. Carpenter. 2013. The responses of eight coral reef calcifiers to increasing partial pressure of CO2 do not exhibit a tipping point. Limnology and Oceanography 58:388-398.
Comeau, S., R.C. Carpenter and P.J. Edmunds. 2013. Response to: Coral reef calcification – carbonate, bicarbonate and proton flux under conditions of increasing ocean acidification. Proceedings of the Royal Society B – Biological Sciences 280:20131153.
Cumbo, V.R., T.-Y. Fan and P.J. Edmunds. 2013. Effects of exposure duration on the response of Pocillopora damicornis larvae to elevated temperature and high pCO2. Journal of Experimental Marine Biology and Ecology 439:100-107.
Cumbo, V.R., P.J. Edmunds, C.B. Wall and T.-Y. Fan. 2013. Brooded coral larvae differ in their response to high temperature and elevated pCO2 depending on the day of release. Marine Biology 160:2903-2917
Dufault, A.M., A. Ninokawa, L. Bramanti, V.R. Cumbo, T.-Y. Fan and P.J. Edmunds. 2013. The role of light in mediating the effects of ocean acidification on coral calcification. Journal of Experimental Biology 216:1570-1577.
Edmunds P.J., V.R. Cumbo and T.-Y. Fan. 2013. Metabolic costs of larval settlement and metamorphosis in the coral Seriatopora caliendrum under ambient and elevated pCO2. Journal of Experimental Marine Biology and Ecology 443:33-38.
Hofmann, G.E., C.A Blanchette, E.B. Rivest and L. Kapsenberg. 2013. Taking the pulse of marine ecosystems: The importance of coupling long-term physical and biological observations in the context of global change biology. Oceanography 26:140-148.
Leichter, J.J., A.L., Alldredge, G. Bernardi, A.J. Brooks, C.A. Carlson, R,C. Carpenter, P.J. Edmunds, M.R. Fewings, K.M. Hanson, J.L. Hench, S.J. Holbrook, C.E. Nelson, R.J. Schmitt, R.J. Toonan, L Washburn and A.S.J. Wyatt. 2013. Biological and physical interactions on a tropical island coral reef: Transport and retention processes on Moorea, French Polynesia. Oceanography 26:52-63.
Padilla-Gamino, J.L., R.R. Bidigare, D.J. Barshis, A. Alamaru, L. Hedouin, X. Hernandez-Pech, F. Kandel, S.L.Soon, M.S. Roth, L.J. Rodrigues, A.G. Grottoli, C. Portocarrero, S.A. Wagenhauser, F. Buttler and R.D. Gates. 2013. Are all eggs created equal? A case study from the Hawaiian reef-building coral Montipora capitata. Coral Reefs 32:137-152.
Page, H.M., A.J. Brooks, M. Kulbicki, R. Galzin, R.J. Miller, D. Reed, R.J. Schmitt, S.J. Holbrook and C. Koennigs. 2013. Stable isotopes reveal trophic relationships and diet of consumers in temperate kelp forest and coral reef ecosystems. Oceanography 26:180-189.
Putnam, H.M., A.B. Mayfield, T.-Y. Fan, C.-S. Chen and R.D. Gates. 2013. The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperatures and pCO2. Marine Biology 160:2157-2173.
Stat M, X. Pochon, E.C. Franklin, J.F. Bruno, K.S. Casey, E.R. Selig and R.D. Gates. 2013. The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress. Ecology and Evolution 3:1317-1329.
Stewart, H.L., N.N. Price, S.J. Holbrook, R.J. Schmitt and A.J. Brooks. 2013. Determinants of the onset and strength of mutualistic interactions between branching corals and associate crabs. Marine Ecology Progress Series 493:155-163.
Werdell, P.J., B.A. Franz, S.W. Bailey, G.C. Feldman, E. Boss, V.E. Brando, M. Dowell, T. Hirata, S.J. Lavender, Z. Lee, H. Loisel, S. Maritorena, F. Mélin, T.S. Moore, T.J. Smyth, D. Antoine, E. Devred, O. Hembise Fanton d’Andon, and A. Mangin. 2013. Generalized ocean color inversion model for retrieving marine inherent optical properties. Applied Optics 52: 2019-2037.
Beldade, R., S.J. Holbrook, R.J. Schmitt, S. Planes, D. Malone and G. Bernardi. 2012. Larger female fish contribute disproportionately more to self-replenishment. Proceedings of the Royal Society of London. Series B, Biological Sciences 279:2116-2121.
Buenau, K.E., Price, N.N., Nisbet, R,M. 2012. Size dependence, facilitation, and microhabitats mediate space competition between coral and crustose coralline algae in a spatially explicit model. Ecological Modelling 237: 23-33.
Comeau, S., R.C. Carpenter and P.J. Edmunds. 2012. Coral reef calcifiers buffer their response to ocean acidification using both bicarbonate and carbonate. Proceedings of the Royal Society B – Biological Sciences 280:20122374.
Dufault, A.M., V.R. Cumbo, T.-Y. Fan and P.J. Edmunds. 2012. Effects of diurnally oscillating pCO2 on the calcification and survival of coral recruits. Proceedings of the Royal Society B – Biological Sciences 279:2951-2958.
Edmunds, P.J. D.B. Brown and V. Moriarty. 2012. Interactive effects of ocean acidification and temperature on two scleractinian corals from Moorea, French Polynesia. Global Change Biology 18:2173-2183.
Franklin, E.C., M. Stat, X. Pochon, H.M. Putnam and R.D. Gates. 2012. GeoSymbio: A hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses. Molecular Ecology Resources 12:369-373.
Johnson, M.D. and R.C. Carpenter. 2012. Ocean acidification and warming decrease calcification in the crustose coralline alga Hydrolithon onkodes and increases susceptibility to grazing. Journal of Experimental Marine Biology and Ecology 434:94-101.
Krueger, T. and R.D. Gates. 2012. Cultivating endosymbionts - host environmental mimics support the survival of Symbiodinium C15 ex hospite. Journal of Experimental Marine Biology and Ecology 413:169-176.
Mayfield, A.B., P.-H. Chan, H.M. Putnam, C.-S. Chen and T.-Y. Fan. 2012. The effects of a variable temperature regime on the physiology of the reef-building coral Seriatopora hystrix: results from a laboratory-based reciprocal transplant. Journal of Experimental Biology 215:4183-4195.
Padilla-Gamino J.L., K.M. Hanson, M. Stat, and R.D. Gates. 2012. Phenotypic plasticity of the coral Porites rus: acclimatization responses to a turbid environment. Journal of Experimental Marine Biology and Ecology 435:71-80.
Padilla-Gamino, J.L., X. Pochon, C. Bird, G.T. Concepcion and R.D. Gates. 2012. From parent to gamete: vertical transmission of Symbiodinium (Dinophyceae) ITS2 sequence assemblages in the reef building coral Montipora capitata. PLoS One 7(6): e38440.
Pochon, X., H.M. Putnam, F. Burki and R.D. Gates. 2012. Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium. PLoS One 7(1):e29816.
Putnam H.M., M. Stat, X. Pochon and R.D. Gates. 2012. Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals. Proceedings of the Royal Society B – Biological Sciences 279:4352-4361.
Adam, T.C., R.J. Schmitt, S.J. Holbrook, A.J. Brooks, P.J. Edmunds, R.C. Carpenter and G. Bernardi. 2011. Herbivory, connectivity and ecosystem resilience: response of a coral reef to a large-scale perturbation. PLoS One 6(8):e23717.
Antoine D., D.A. Siegel, T. Kostadinov, S. Maritorena, N.B. Nelson, B. Gentili, V. Vellucci, and N. Guillocheau. 2011. Variability in optical particle backscattering in contrasting bio-optical oceanic regimes. Limnology and Oceanography 56:955-973.
Gates, R.D. and T.D. Ainsworth. 2011. The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals. Journal of Experimental Marine Biology and Ecology 408:94-101.
Haas, A.F., C.E. Nelson, L. Wegley-Kelly, C.A. Carlson, F. Rohwer, J.J. Leichter, A. Wyatt and J.E. Smith. 2011. Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity. PLoS One 6(11):e27973.
Johnson, M.K., S.J. Holbrook, R.J. Schmitt and A.J. Brooks. 2011. Fish communities on staghorn coral: effects of habitat characteristics and resident farmerfishes. Environmental Biology of Fishes 91:429-448.
Mayfield, A.B., L.-H. Wang, P.-C. Tang, T.-Y. Fan, Y.-Y. Hsiao, C.-L. Tsai and C.-S. Chen. 2011. Assessing the impacts of experimentally elevated temperature on the biological composition and molecular chaperone gene expression of a reef coral. PLoS One 6(10):e26529.
Melack, J.M., A.C. Finzi, D. Siegel, S. MacIntyre, C.E. Nelson, A.K. Aufdenkampe and M.L. Pace. 2011. Improving biogeochemical knowledge through technical innovation. Frontiers in Ecology and the Environment 9:37-43.
Mora, C., O. Aburto-Oropeza, A.A. Bocos, P.M. Ayotte, S. Banks, A.G. Bauman, M. Beger, S. Bessudo, D.J. Booth, E. Brokovich, A. Brooks, P. Chabanet, J. Cinner, J. Cortes, J.J. Cruz-Motta, A.C. Magana, E. DeMartini, G.J. Edgar, D.A. Feary, S.C.A. Ferse, A. Friedlander, K.J. Gaston, C. Gough, N.A.J. Graham, A. Green, H. Guzman, M. Kulbicki, Y. Letourneur, A.L. Perez, M. Loreau, Y. Loya, C. Martinez, I. Mascarenas-Osorio, T. Morove, M.-O. Nadon, Y. Nakamura, G. Paredes, N. Polunin, M.S. Pratchett, H.R. Bonilla, F. Rivera, E. Sala, S. Sandin, G. Soler, R. Stuart-Smith, E. Tessier, D.P. Tittensor, M. Tupper, P. Usseglio, L. Vigliola, L. Wantiez, I. Williams, S.K. Wilson and F.A. Zapata. 2011. Global human footprint on the linkage between biodiversity and ecosystem functioning in reef fishes. PloS Biology 9:e1000606.
Nelson, C.E., A.L. Alldredge, E.A. McCliment, L.A. Amaral-Zettler and C.A. Carlson. 2011. Depleted dissolved organic carbon and distinct bacterial communities in the water column of a rapid-flushing coral reef ecosystem. ISME Journal 5:1374-1387.
Padilla-Gamino, J.L., T.M. Weatherby, R.G. Waller and R.D. Gates. 2011. Formation and structural organization of the egg-sperm bundle of the scleractinian coral Montipora capita. Coral Reefs 30:371-380.
Salerno, J.L., D.R. Reineman, R.D. Gates and M.S. Rappe. 2011. The effect of a sub-lethal temperature elevation on the structure of bacterial communities associated with the coral Porites compressa. Journal of Marine Biology, 2011:Article ID 969173, 9 Pp.
Stat, M., C.E. Bird, X. Pochon, L. Chasqui, L.J. Chauka, G.T. Concepcion, D. Logan, M. Takabayashi, R.J. Toonen and R.D. Gates. 2011. Variation in Symbiodinium ITS2 sequence assemblages among coral colonies. PLoS One 6:e15854.
Stat, M, and R.D. Gates. 2011. Clade D Symbiodinium in scleractinian corals: a “nugget” of hope, a selfish opportunist, an ominous sign, or all of the above? Journal of Marine Biology, 2011:Article ID 730715, 9 Pp.
Barshis, D.J., J.H. Stillman, R.D. Gates, R.J. Toonen, L.W. Smith and C. Birkeland. 2010. Protein expression and genetic structure of the coral Porites lobata in an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity? Molecular Ecology 19:1705-1720.
Baskett, M.L., R.M. Nisbet, C.V. Kappel, P.J. Mumby and S.D. Gaines. 2010. Conservation management approaches to protecting the capacity for corals to respond to climate change: a theoretical comparison. Global Change Biology 16:1229-1246.
Green, D.H., P.J. Edmunds, X. Pochon and R.D. Gates. 2010. The effects of substratum type on the growth, mortality, and photophysiology of juvenile corals in St. John, US Virgin Islands. Journal of Experimental Marine Biology and Ecology 384:18-29.
Hofmann G.E., Barry J.P., Edmunds P.J., Gates R.D., Hutchins D.A., Klinger T. and M.A. Sewell. 2010. The effect of ocean acidification on calcifying organisms in marine ecosystems: an organism to ecosystem perspective. Annual Review of Ecology, Evolution and Systematics 41:127-147.
Jacobson, L.M. and P.J. Edmunds. 2010. Long-term changes in the concentration of zooplankton and particulate material over a fringing reef in St. John, US Virgin Islands. Bulletin of Marine Sciences 86:763-772.
Leray, M., R. Beldade, S.J. Holbrook, R.J. Schmitt, S. Planes and G. Bernardi. 2010. Allopatric divergence and speciation in coral reef fish: the three-spot Dascyllus, Dascyllus trimaculatus, species complex. Evolution 64:1218-1230.
Lesser, M. P., M. Slattery, M. Stat, M. Ojimi, R.D. Gates and A. Grottoli. 2010. Photoacclimatization by the coral Montastraea cavernosa in the mesophotic zone: light, food, and genetics. Ecology 91:990-1003.
Maritorena S., O.H.F. d’Andon, A. Mangin and D.A. Siegel. 2010. Merged satellite ocean color data products using a bio-optical model: characteristics, benefits and issues. Remote Sensing of Environment 114(8):1791-1804.
Mayfield, A.B., Y-Y Hsiao, T-Y Fan, C-S Chen and R.D. Gates. 2010. Evaluating the temporal stability of stress-activated protein kinase and cytoskeleton gene expression in the Pacific reef corals Pocillopora damicornis and Seriatopora hystrix . Journal of Experimental Marine Biology and Ecology 395:215-222.
Pochon, X., M. Stat, M. Takabayashi, L. Chasqui, L.J. Chauka, D.D.K. Logan and R.D. Gates. 2010. Comparison of endosymbiotic and free-living Symbiodinium (Dinophyceae) diversity in a Hawaiian reef environment. Journal of Phycology 46:53-65.
Wilson, S.K., M. Adjeroud, D.R. Bellwood, M.L. Berumen, D. Booth, Y.-M. Bozec, P. Chabanet, A. Cheal, J. Cinner, M. Depczynski, D.A. Feary, M. Gagliano, N.A.J. Graham, A.R. Halford, B.S. Halpern, A.R. Harborne, A.S. Hoey, S.J. Holbrook, G.P. Jones, M. Kulbiki, Y. Letourneur, T.L. De Loma, T. McClanahan, M.I. McCormick, M.G. Meekan, P.J. Mumby, P.L. Munday, M.C. Ohman, M.S. Pratchett, B. Riegl, M. Sano, R.J. Schmitt and C. Syms. 2010. Crucial knowledge gaps in current understanding of climate change impacts on coral reef fishes. Journal of Experimental Biology 213:894-900
Yancey, P.H., M. Heppenstall, S. Ly, R.M. Andrell, R.D. Gates, V.L. Carter and M. Hagedorn. 2010. Betaines and dimethylsulfoniopropionate as major osmolytes in Cnidaria with endosymbiotic dinoflagellates. Physiological and Biochemical Zoology 83:167-173.
Adjeroud, M., F. Michonneau, P.J. Edmunds, Y. Chancerelle, T. Lison de Loma, L. Penin, L. Thibaut, J. Vidal-Dupiol, B. Salvat and R. Galzin. 2009. Recurrent disturbances, recovery trajectories, and resilience of coral assemblages on a South Central Pacific reef. Coral Reefs 28:775-780.
Beldade, R., S.J. Holbrook, R.J. Schmitt, S. Planes and G. Bernardi. 2009. Isolation and characterization of eight polymorphic microsatellite markers from the orange-fin anemonefish, Amphiprion chrysopterus. Conservation Genetics Resources 1: 333-335.
Fitt, W.K., R.D. Gates, O. Hoegh-Guldberg, J.C. Bythell, A. Jatkar, A.G. Grottoli, M. Gomez, P. Fisher, T.C. LaJeunesse, O. Pantos, R. Iglesias-Prieto, D.J. Franklin, L.J. Rodrigues, J.M. Torregiani, R. van Woesik and M.P. Lesser. 2009. Response of two species of Indo-Pacific corals, Porites cylindrica and Stylophora pistillata, to short term thermal stress: the host does matter in determining the tolerance of corals to bleaching. Journal of Experimental Marine Biology and Ecology 373:102-110.
Kane, C.N., A.J. Brooks, S.J. Holbrook and R.J. Schmitt. 2009. The role of microhabitat preference and social organization in determining the spatial distribution of a coral reef fish. Environmental Biology of Fishes 84:1-10.
Leray, M., R. Beldade, S.J. Holbrook, R.J. Schmitt, S. Planes and G. Bernardi. 2009. Isolation and characterization of 13 polymorphic nuclear microsatellite primers for the widespread Indo-Pacific three-spot damselfish, Dascyllus trimaculatus, and closely related D. auripinnis. Molecular Ecology Resources 9:213-215.
Muller, E.B., S.A.L.M. Kooijman, P.J. Edmunds, F.J. Doyle and R.M. Nisbet. 2009. Dynamic energy budgets in syntrophic symbiotic relationships between heterotrophic hosts and photoautotrophic symbionts. Journal of Theoretical Biology 259:44-57.
Olson, N.D., T.D. Ainsworth, R.D. Gates and M. Takabayashi. 2009. Diazotrophic bacteria associated with Hawaiian Montipora corals: diversity and abundance in correlation with symbiotic dinoflagellates. Journal of Experimental Marine Biology and Ecology 371:140-146.
Green, D.H., P.J. Edmunds and R.C. Carpenter. 2008. Increasing relative abundance of Porites astereoides on Caribbean reefs mediated by an overall decline in coral cover. Marine Ecology Progress Series 359:1-10.
Lison de Loma, T., C.W. Osenberg, J.S. Shima, Y. Chancerelle, N. Davies, A.J. Brooks and R. Galzin. 2008. A framework for assessing impacts of marine protected areas in Moorea (French Polynesia). Pacific Science 62:431-441.
Morrow, K.M. and R. Carpenter. 2008. Shallow kelp canopies mediate macroalgal composition: effects on the distribution and abundance of Corynactis californica (Corallimorpharia). Marine Ecology Progress Series 361:119-127.
Rosman, J.H., J.L. Hench, J.R. Koseff and S.G. Monismith. 2008. Extracting Reynolds stresses from acoustic doppler current profiler measurements in wave-dominated environments. Journal of Atmospheric and Oceanic Technology 25:286-306.
Elahi, R. and P.J. Edmunds. 2007. Determinate growth and the scaling of photosynthetic energy intake in the solitary coral Fungia concinna (Verrill). Journal of Experimental Marine Biology and Ecology 349:183-193.
Hoegh-Guldberg, O., G. Muller-Parker, C.B. Cook, R.D. Gates, E. Gladfelter, R.K. Trench and V. Weiss. 2007. Len Muscatine (1932-2007) and his contributions to the understanding of algal-invertebrate endosymbiosis. Coral Reefs 26:731-739.
Leggat, W., T.A. Ainsworth, J.C. Bythell, S. Dove, R.D. Gates, O. Hoegh-Guldberg, R. Iglesias-Prieto and D. Yellowlees. 2007. The hologenome theory disregards the coral holobiont. Nature Reviews Microbiology 5(10) DOI: 10.1038/nrmicro1635-c1.
Lesser, M.P., J.C. Bythell, R.D. Gates, R.W. Johnstone and O. Hoegh-Guldberg. 2007. Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data. Journal of Experimental Marine Biology and Ecology 346:36-44.
Ohlmann, C., P. White, L. Washburn, E. Terrill, B.M. Emery and M. Otero. 2007. Interpretation of coastal HF radar derived surface currents with high resolution drifter data. Journal of Atmospheric and Oceanic Technology 24:666-680.
Padilla-Gamino, J.L. and R.C. Carpenter. 2007. Thermal ecophysiology of Laurencia pacifica and Laurencia nidifica (Ceramiales, Rhodophyta) from tropical and warm-temperate regions. Journal of Phycology 43:686-692.
Penin, L., M. Adjeroud, M. Schrimm and H.S. Lenihan. 2007. High spatial variability in coral bleaching around Moorea (French Polynesia): patterns across locations and water depths. Comptes Rendus Biologies 330:171-181.
Schmitt, R.J. and S.J. Holbrook. 2007. Predicting the magnitude of temporal variation in young-of-year class strength of surfperch (Teleostei: Embiotocidae). The Raffles Bulletin of Zoology (Supplement) 14:155-160.
Bruno, J.F., S.C. Lee, J.S. Kertesz, R.C. Carpenter, Z.T. Long and J.E. Duffy. 2006. Partitioning the effects of algal species identity and richness on benthic marine primary production. Oikos 115:170-178.
Stewart, H.L. 2006. Ontogenetic changes in buoyancy, breaking strength, extensibility, and reproductive investment in a drifting macroalga Turbinaria ornata (Phaeophyta). Journal of Phycology 42:43-50.
Siegel, D.A., S. Maritorena, N.B. Nelson, M.J. Behrenfeld and C.R. McClain. 2005. Colored dissolved organic matter and its influence on the satellite-based characterization of the ocean biosphere. Geophysical Research Letters 32:L20605.
Siegel, D.A., S. Maritorena and N.B. Nelson. 2005. Independence and interdependencies among global ocean color properties: reassessing the bio-optical assumption. Journal of Geophysical Research 110:C07011.
Siegel, D.A., D. Antoine, M.J. Behrenfeld, O. Hembise Fanton d’Andon, E. Fields, B.A. Franz, P. Goryl, S. Maritorena, C.R. McClain, M. Wang, and J.A. Yoder. 2012. Global ocean phytoplankton. In Blunden, J. and D.S. Arndt (eds.) State of the Climate in 2011. Bulletin of the American Meteorological Society 93:S107-S110.
Stat, M., A.C. Baker, D.G. Bourne, A.M.S. Correa, Z. Forsman, M.J. Huggett, X. Pochon, D. Skillings, R.J. Toonen, M.J.H. van Oppen and R.D. Gates. 2012. Molecular delineation of species in the coral holobiont. in M. Lesser, editor. Advances in Marine Biology Vol. 63, Amsterdam, The Netherlands. Academic Press. 65 pp.
Siegel, D.A., M.J. Behrenfeld, S. Maritorena, R.T. O’Malley and E. Fields. 2011. Global ocean phytoplankton. In Blunden, J., D.S. Arndt and M.O. Baringer (eds.) State of the Climate in 2010. Bulletin of the American Meteorological Society 92:S105-S108.
Brainard, R.E., S. Bainbridge, R. Brinkman, C.M. Eakin, J.-P. Gattuso, D. Gledhill, L. Gramer, J. Hendee, R.K. Hoeke, S.J. Holbrook, O. Hoegh-Guldberg, M. Lammers, D. Manzello, M. McManus, R. Moffitt, M. Monaco, J. Morgan, D. Obura, S. Planes, R.J. Schmitt, C. Steinberg, H. Sweatman, O.J. Vetter and K.B. Wong. 2010. An international network of coral reef ecosystem observing systems (I-CREOS). In Proceedings of OceanObs’09: Sustained Ocean Observations and Information for Society (Vol. 2), Venice, Italy, 21-25 September 2009, J. Hall, D.E. Harrison and D. Stammer, editors, ESA Publication WPP-306.
Holbrook, S.J., R.J. Schmitt, A.J. Brooks, T. Margalith, J. Burnsed, K. Seydel and H. Masui. 2007. The use of LED light lures to enhance larval settlement of coral reef fish. Pages 326-338 in T. Murata, editor. State of the Art: High Power LED Application Practices, Technical Information Institute Co. Ltd., Japan.
Brown, D. B. 2013. Multiple mechanisms of calcification and differences in resource partitioning may determine the response of calcifying cnidarians to ocean acidification. California State University Northridge, Northridge, CA.
Hanson, K. 2011. Planktivorous fish link coral reef and oceanic food webs: causes and consequences of landscape-level patterns in fish behavior, diet and growth. PhD Dissertation, Scripps Institution of Oceanography. University of California San Diego, San Diego, CA.
Yau, A. J.-Y. 2011. Size-Based Approaches to Modeling and Managing Local Populations: A Case Study Using an Artisanal Fishery for Giant Clams, Tridacna maxima. PhD Dissertation, University of California Santa Barbara, Santa Barbara, CA.
Buenau, K.E. 2009. The shifting landscapes of competition: Modeling the roles of space, size, and facilitation in marine benthic communities. PhD Dissertation, University of California Santa Barbara, Santa Barbara, CA.
Goldenheim, W.M. 2009. The effects of flow and temperature over multiple time scales on scleractinian growth and photo-physiology in Moorea, French Polynesia. MS Thesis, California State University Northridge, Northridge, CA.
Spitler, M.I. 2009. Factors influencing the distribution and abundance of the dominant macroalgal species on coral reefs in Moorea, French Polynesia. MS Thesis, California State University Northridge, Northridge, CA.
Muehllehner, N. 2008. Growth and morphology in Acropora under increasing carbon dioxide and the effect of increased temperature and carbon dioxide on the photosynthesis and growth of Porites rus and Pocillopora meandrina. MS Thesis, California State University Northridge, Northridge, CA.
Price, N.N. 2008. Structuring processes for benthic communities: Habitat selection, facilitation, and competition on a coral reef. PhD Dissertation, University of California Santa Barbara, Santa Barbara, CA.
Talmage, S.C. 2007. Variation in abundance and carbon allocation for Sargassum mangarevense across gradients in herbivory and hydrodynamic exposure in Moorea, French Polynesia. MS Thesis, California State University Northridge, Northridge, CA.
Lape, J.C.P. 2005. Factors influencing the quality of a refuge for coral reef fish: effects of microhabitat setting, size and inhabitants. MS Thesis, University of California Santa Barbara, Santa Barbara, CA.
Bramanti, L. and P.J. Edmunds. 2013. Demographic models can forcast climate change effects on scleractinian corals: the Pocillopora damicornis case study. In: Proceedings of the Society of Integrative and Comparative Biology. San Francisco, CA. Integrative and Comparative Biology 53 (Supplement 1):E22-E22.
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Lenz, E.A. and P.J. Edmunds. 2013. Evidence that octocorals are increasing in population density in the Caribbean. In: Proceedings of the Society of Integrative and Comparative Biology. San Francisco, CA. Integrative and Comparative Biology 53 (Supplement 1):E317-E317.
Rivest, E.B., C.-S. Chen, T.-Y. Fan, H.-H. Li, P.J. Edmunds and G.E. Hofmann. 2013. Energetic consequences of ocean acidification and warming for coral larvae. In: Proceedings of the Society of Integrative and Comparative Biology. San Francisco, CA. Integrative and Comparative Biology 53 (Supplement 1):E360-E360.
Wall, C.B. and P.J. Edmunds. 2013. Elevated pCO2 increases ammonium excretion in juvenile colonies of the scleractinian Seriatopora caliendrum. In: Proceedings of the Society of Integrative and Comparative Biology. San Francisco, CA. Integrative and Comparative Biology 53 (Supplement 1):E389-E389.
Zamudio, S., L. Bramanti and P.J. Edmunds. 2013. Temperature-induced maternal effects on the phenotype of larvae released by the brooding coral Pocillopora damicornis. In: Proceedings of the Society of Integrative and Comparative Biology. San Francisco, CA. Integrative and Comparative Biology 53 (Supplement 1):E233-E233.
Beijbom, O, P.J. Edmunds, D.I. Kline, G.B. Mitchell and D. Kriegman. 2012. Automated annotation of coral reef survey images. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition. (CVPR), Providence Rhode Island, June, 2012. 8 Pp.
Collin, A., J.L. Hench and S. Planes. 2012. A novel spaceborne proxy for mapping coral cover. In Yellowlees, D. and T.P. Hughes (eds.). Proceedings of the 12th International Coral Reef Symposium, Cairns, Australia, 9-13 July 2012. ICRS12 Proceedings 5 Pp.
Jaroensutasinee, K., M. Jaroensutasinee, S. Bainbridge, T. Fountain, S. J. Holbrook and M. Nekrasov. 2012. CREON – Integrating disparate sources of remote coral reef sensor data. In Yellowlees, D. and T.P. Hughes (eds.). Proceedings of the 12th International Coral Reef Symposium, Cairns, Australia, 9-13 July 2012. ICRS12 Proceedings 5 Pp.
Franklin, E.C., M. Stat, X. Pochon, H.M. Putnam and R.D. Gates. 2011. Rapid development of a hybrid web application for synthesis science of Symbiodinium with Google Apps. In Jones, M. and C. Gries (eds.), Proceedings of the Environmental Information Management Conference 2011. Pp.44-48.
Jaroensutasinee, M., K. Jaroensutasinee, T. Fountain, M. Nekrasov, S. Chumkiew, P. Noonsang, U. Kuhapong and S. Bainbridge. 2011. Coral sensor network at Racha Island, Thailand. In Jones, M. and C. Gries (ed.), Proceedings of the Environmental Information Management Conference 2011. Santa Barbara, CA September 28-29, 2011. Pp 82-86.
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Muehllehner N. and P.J. Edmunds. 2009. Effects of ocean acidification and increased temperature on skeletal growth of two scleractinian corals, Pocillopora meandrina and Porites rus. Proceedings of the 11th International Coral Reef Symposium ICRS11 Proceedings Pp. 57-61.
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Holbrook, S.J., A.J. Brooks and R.J. Schmitt. 2006. Relationships between live coral cover and reef fishes: implications for predicting effects of environmental disturbances. Proceedings of the 10th International Coral Reef Symposium ICRS10 Proceedings Pp. 241-249.
Schmitt, R.J. and S.J. Holbrook. 2006. Developmental delays, recruitment storage and adult attrition rates in local populations of a tropical damselfish. Proceedings of the 10th International Coral Reef Symposium ICRS10 Proceedings Pp. 232-240.
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