Publications

Year Citations Publication Type
In Press Comeau, S., Carpenter, R. C., Edmunds, P. J. Effects of pCO2 on photosynthesis and respiration of tropical scleractinian corals and calcified algae ICES Journal of Marine Science Journal Article
In Press Comeau, S., Tambutte, E., Carpenter, R. C. , Edmunds, P. J., Evensen, N. R., Allemand, D., Ferrier-Pages, C. , Tambutte, S., A., Venn. A. Coral pH regulation of the calcifying fluid is modulated by seawater dissolved inorganic carbon concentration Journal Article
In Press Davis, K., Carlson, P. A., Bradley, D., Warner, R. R., Caselle, J. E. Predation risk influences feeding rates but competition structures space use for a common Pacific parrotfish Oecologia Journal Article
In Press Rivest, E. B., Chen, C. -S., Fan, T. -Y., Li, H. -H., Hofmann, G. E. . Lipid consumption in coral larvae differs among sites: a consideration of environmental history in a global ocean change scenario. Journal Article
2017 Casella, E., Collin, A., Harris, D., Ferse, S. C. A., Bejarano, S., Parravicini, V., Hench, J. L., Rovere, A. Mapping coral reefs using consumer-grade drones and structure from motion photogrammetry techniques Coral Reefs Journal Article
2017 Edmunds, P.J. , S.C. Burgess Size-dependent physiological responses of the branching coral Pocillopora verrucosa to elevated temperature and pCO2 Journal of Experimental Biology Journal Of Experimental Biology Journal Article
2017 Edmunds, P.J, A. Yarid The effects of ocean acidification on wound repair in the coral Porites spp 98-104 Journal of Experimental Marine Biology and Ecology Journal Article
2017 Evensen, N. R., Edmunds, P. J. Conspecific aggregations mitigate the effects of ocean acidification on calcification of the coral Pocillopora verrucosa 1097-1105 Journal of Experimental Biology Journal Article
2017 Lenz, E.A. , P.J. Edmunds Branches and plates of the morphologically plastic coral Porites rus are insensitive to ocean acidification and warming 188-194 Journal of Experimental Marine Biology and Ecology Journal Article
2017 Vellend M., Dorneals M., Baeten L., Beauséjour R., Brown C.D., De Frenne P., Elmendorf S.C., Gotelli N.J., Moyes F. , Myers-Smith I.H. , Magurran A.E., McGill B.J., Shimadzu H., Sievers C. Estimates of local biodiversity change over time stand up to scrutiny 583-590 Ecology Journal Article
2016 Ainsworth, T. D., Gates, R. D. Corals' microbial sentinels 1518-1519 Science Journal Article
2016 Beldade, R, S.J. Holbrook, R.J. Schmitt, S. Planes , G. Bernardi Spatial patterns of self-recruitment of a coral reef fish in relation to island-scale retention mechanisms 5203-5211 Molecular Ecology Journal Article
2016 Bramanti, L., Edmunds, P. J. Density-associated recruitment mediates coral population dynamics on a coral reef. Coral Reefs Journal Article
2016 Brown, D. J., Edmunds, P. J. Differences in the responses of three scleractinians and the hydrocoral Millepora platyphylla to ocean acidification Marine Biology Journal Article
2016 Cinner, J. E., Huchery, C., MacNeil, M. A., Graham, N. A. J., McClanahan, T. R., Maina, J., Maire, E, Kittinger, J., Hicks, C. C., Mora, C., Allison, E., D’Agata, S., Hoey, A., Feary, D., Crowder, L., Williams, I., Kulbicki, M., Vigliola, L., Wantiez, L., Edgar, G., Stuart-Smith, R., Sandin, S. A., Green, A., Hardt, M., Beger, M., Friedlander, A., Campbell, S. J., Holmes, K. E., Wilson, S. K., Brokovich, E., Brooks, A. J., Cruz-Motta, J. J., Booth, D. J., Chabanet, P., Gough, C., Tupper, M., Ferse, S. C. A., Rashid Sumaila, U., Mouillot, D. Bright spots among the world’s coral reefs 416-419 Nature Journal Article
2016 Clausing, R. J., Fong, P. Environmental variability drives rapid and dramatic changes in nutrient limitation of tropical macroalgae with different ecological strategies. Coral Reefs Journal Article
2016 Comeau, S., Carpenter, R. C., Lantz, C. A., Edmunds, P. J. Parameterization of the response of calcification to temperature and pCO2 in the coral Acropora pulchra and the alga Lithophyllum kotschyanum. 929-939 Coral Reefs Journal Article
2016 Davies, N., Field, D., Gavaghan, D., Holbrook, S. J., Planes, S., Troyer, M., Bonsall, M., Claudet, J., Roderick, G., Schmitt, R. J., Zettler, L. A., Berteaux, V., Bossin, H., Cabasse, C., Collin, A., Deck, J., Dell, T., Dunne, J., Gates, R. D., Harfoot, M., Hench, J. L., Hopuare, M., Kirch, P., Kotoulas, G., Kosenko, A., Leichter, J. J., Lenihan, H. S., Magoulas, A., Martinez, N., Meyer, C. P., Stoll, B., Swalla, B., Tartakovsky, D. M., Murphy, H. T., Turyshev, S., Valdvinos, F., Williams, R., Wood, S. Simulating social-ecological systems: the Island Digital Ecosytem Avatars (IDEA) consortium. 1-4 Gigascience Journal Article
2016 Davis, S. L. Mechanisms underlying macroalgal phase shifts in coral reef ecosystems Thesis or Dissertation
2016 Didden, C., Edmunds, P. J. Experiential ecological investigations as a vehicle coupling teaching & research in high schools & universities 278-284 American Biology Teacher Journal Article
2016 Edmunds, P. J., Comeau, S., Lantz, C. A., Andersson, A., Briggs, C., Cohen, A., Gattuso, J.P., Grady, J. M., Gross, K., Johnson, M., Muller, E. B., Ries, J. B., Tambutté, S., Tambutté, E., Venn, A., Carpenter, R. C. Integrating the effects of ocean acidification across functional scales on tropical coral reefs. 350-362 BioScience Journal Article
2016 Edmunds, P. J., Leichter, J. J. Spatial scale-dependent vertical zonation of coral reef community structure in French Polynesia. e01342 Ecosphere Journal Article
2016 Edmunds, P. J., Leichter, J. J., Johnston, E. C., Tong, E. J., Toonen, R. J. Ecological and genetic variation in reef-building corals on four Society Islands. Limnology and Oceanography Journal Article
2016 Evensen, N. R., Edmunds, P. J. Interactive effects of ocean acidification and neighboring corals on the growth of Pocillopora verrucosa 148 Marine Biology Journal Article
2016 Guo, T., Capra, A., Troyer, M., Gruen, A, Brooks, A. J., Hench, J. L., Schmitt, R. J., Holbrook, S. J., Dubbini, M. Accuracy assessment of underwater photogrammetric three dimensional modelling for coral reefs Remote Sensing and Spatial Information Sciences XIII International Society for Photogrammetry and Remote Sensing Congress, Prague, Czech Republic Conference Proceeding
2016 Han, X., Adam, T. C., Schmitt, R. J., Brooks, A. J., Holbrook, S. J. Response of herbivore functional groups to sequential perturbations in Moorea, French Polynesia. 99-1009 Coral Reefs Journal Article
2016 Hanson K.M., Schnarr E.L., Leichter J.J Non-random feeding enhances the contribution of oceanic zooplankton to the diet of the planktivorous coral reef fish Dascyllus flavicaudus Marine Biology Journal Article
2016 Ho, M. Effects of ocean acidification and temperature on the physiology and ecology of two fleshy macroalgae that differ in their carbon acquisition strategy. Thesis or Dissertation
2016 Holbrook, S. J., Walker, L. R., Willig , M. R. Oxford, England, U.K. Kelp forests, coral reefs and the LTER Program: Synergies and impacts on a scientific career. Oxford University Press 27 Long-Term Environmental Research: Changing the Nature of Scientists. Book Chapter
2016 Holbrook, S.J., R.J. Schmitt, T.C. Adam, A.J. Brooks Coral reef resilience, tipping points and the strength of herbivory 35817 Scientific Reports Journal Article
2016 Jacobson L.M., Edmunds P.J., Muller E.B., Nisbet R.M. The implications of reduced metabolic rate in resource-limited corals 870-877 Journal Of Experimental Biology Journal Article
2016 Knee, K. L., Crook, E. D., Hench, J. L., Leichter, J. J., Paytan, A. Assessment of submarine groundwater discharge (SGD) as a source of dissolved radium and nutrients to Moorea (French Polynesia) coastal waters Estuaries and Coasts Journal Article
2016 Leenhardt P., Lauer M., Moussa R.M., Holbrook S.J., Rassweiler A., Schmitt R.J., Claudet J. Complexities and uncertainties in transitioning small-scale coral reef fisheries Frontiers in Marine Science Journal Article
2016 Madin, J.S., Anderson K.D., Andreasen M.H., Bridges T.C.L., Cairns S.D., Connolly S.R., Darling E.S. , Diaz M., Falster D.S., Franklin E.C., Gates E.D., Hoogenboom M.O., Huang D., Keith S.A., Kosnik M.A., Kuo C.-Y., Lough J.M., Lovelock C.E., Luiz O., Matinelli J., Mizerek T. , Pandolfi J.M., Pochon X., Pratchett M.S., Putnam H.M., Roberts T.E., Stat M., Wallace C.C., Widman E., Baird A.H. The Coral Traits Database, a curated database of trait information for coral species from the global oceans Scientific Data Journal Article
2016 Mor, C. Light and temperature control physiological responses of Halimeda to ocean acidification Thesis or Dissertation
2016 Mor, C. Light and temperature control physiological responses of Halimeda to ocean acidification Thesis or Dissertation
2016 Nelson, H. R. From trees to octocorals: the role of phenotypic integration, shading, and self-thinning in underwater animal forests Thesis or Dissertation
2016 Putnam H.M. , Davidson J., R.D. Gates Ocean acidification influences DNA methylation and phenotypic plasticity in environmentally susceptible corals 1165-1178 Evolutionary Applications Journal Article
2016 Putnam H.M., Davidson J., Gates R.D. Ocean acidification influences DNA methylation and phenotypic plasticity in environmentally susceptible corals Integrative and Comparative Biology Journal Article
2016 Rivest, E. B., O'Brian, M., Kapsenberg, L., Gotschalk, C. C., Blanchette, C. A., Hoshijima, U., Hofmann, G. E. Beyond the benchtop and the benthos: dataset management planning and design for time series of ocean carbonate chemistry associated with Durafet-based pH sensors 209-220 Ecological Informatics Journal Article
2016 Schmitt, R. J. The LTER construct for understanding dynamics of coral reef ecosystems and its influence on my science. Long-Term Environmental Research: Changing the Nature of Scientists. Book Chapter
2016 Shantz A.A., Lemoine N.P., Burkepile D.E. Nutrient loading alters the performance of key nutrient exchange mutualisms 20-28 Ecology Letters Journal Article
2016 Shaw, E.C, R.C. Carpenter, C.A. Lantz , P.J. Edmunds Intraspecific variability in the response to ocean warming and acidification in the scleractinian coral Acropora pulchra Marine Biology Journal Article
2016 Sogin E.M., Putnam H.M., Anderson P.E., Gates R.D. Metabolomic signatures of increases in temperature and ocean acidification from the reef-building coral, Pocillopora damicornis Metabolomics Journal Article
2016 Sternberg D.R., Nelson H.R., Edmunds P.J. Asexual budding and aggregated spatial distribution of fungiid corals from disturbed reefs in Moorea, French Polynesia Integrative and Comparative Biology Journal Article
2016 Swanson, S. A. Echinoid herbivores and coral reef resilience Thesis or Dissertation
2016 Tootell J.S., Steele M.A. Distribution, behavior, and condition of herbivorous fishes on coral reefs track algal resources 13-24 Oecologia Journal Article
2016 Tsounis, G. , P.J. Edmunds The potential for self-seeding by the coral Pocillopora spp. In Moorea, French Polynesia PeerJ Journal Article
2015 Andersson, A. J., Kline, D. I., Edmunds, P. J., Archer, S. D., Bednarsek, N., Carpenter, R. C., Chadsey, M., Goldstein, P., Grottoli, A. G., Hurst, T. P., King, A. L., Kubler, J. E., Kuffner, I. B., Mackey, K. R. M. , Menge, B. A., Paytan, A., Riebesell, U. , Schnetzer, A., Warner M. E. , Zimmerman, R. C. Understanding ocean acidification on organismal to ecological scales. 16-27 Oceanography Journal Article
2015 Beijbom, O., Edmunds, P. J., Roelfsema, C., Smith, J., Kline, D. I., Neal, B. P., Dunlap, M. J., Moriarty, V., Fan, T. - Y., Tan, C. -J., Chan, S., Treibitz, T., Gamst, A., Mitchell, B. G., Kriegman, D. Towards automated annotation of benthic survey images: Variability of human experts and operational modes of automation. e0130312 PLoS One Journal Article
2015 Bramanti, L., Iannelli, M., Fan, T. - Y., Edmunds, P. J. Using demographic models to project the effects of climate change on scleractinian corals: Pocillopora damicornis as a case study 505-515 Coral Reefs Journal Article
2015 Brewin, R. J. W., Sathyendranath, S., Muller, D., Brockmann, C., Deschamps, P. Y., Devred, E., Doerffer, R., Fomferra, N., Franz, B., Grant, M., Groom, S., Horseman, A., Hu, C., Krasemann, H., Lee, Z., Maritorena, S., Meelin, F., Peters, M., Platt, T., Regner, P., Smyth, T., Steinmetz, F., Swinton, J., Werdell, J., White III, G. N. The ocean colour climate change initiative: III. A round-robin comparison on in-water bio-optical algorithms 271-294 Remote Sensing of Environment Journal Article
2015 Briggs, A. A. Northridge, CA The effects of ocean acidification, temperature, and light on the physiology and ecology of tropical crustose coralline algae. California State University, Northridge Biology Thesis or Dissertation
2015 Brown, A., Carpenter, R. C. Water flow influences the mechanisms and outcomes of interactions between massive Porites and coral reef algae. 459-468 Marine Biology Journal Article
2015 Carlson, C. A., Giovannoni, S.J. Annual review of marine science 596 Book
2015 Carlson, C. A., Hansell, D. A. DOM sources, sinks, reactivity and budgets. 65-126 Biochemistry of marine dissolved organic matter, 2nd edition Book Chapter
2015 Carlson, C. A., Giovannoni, S.J. Introduction to the Annual Review Annual review of marine science Book Chapter
2015 Comeau, S., Carpenter, R. C., Lantz, C. A., Edmunds, P. J. Ocean acidification accelerates dissolution of experimental coral reef communities. 365-372 Biogeosciences Journal Article
2015 Edmunds, P. J., Steneck, R., Albright, R., Carpenter, R. C., Chui, A. P. Y., Fan, T. -Y., Harii, S., Kitano, H., Kurihara, H., Legendre, L., Mitarai, S., Muko, S., Nozawa, Y., Padillo-Gamino, J., Price, N. N., Sakai, K., Suzuki, G., van Oppen, M. J. H., Yarid, A., Gates, R. D. Geographic variation in long-term trajectories of change in coral recruitment: a global-to-local perspective. 609-622 Journal of Marine and Freshwater Research Journal Article
2015 Ellis, A. The impacts of temperature and other environmental factors on the early life stages of a scleractinian coral Thesis or Dissertation
2015 Evensen, N. R., Edmunds, Dr. Peter J. The effects of ocean acidification on species interactions among scleractinian corals. Biology Thesis or Dissertation
2015 Evensen, N. R., Edmunds, P. J., Sakai, K. Effects of pCO2 on spatial competition between the corals Montipora aequituberculata and Porites lutea. 123-134 Marine Ecology Progress Series Journal Article
2015 Forsman, Z., Wellington, G. M., Fox, G. E., Toonen, R. J. Clues to unraveling the coral species problem: distinguishing species from geographic variation in Porites across the Pacific with molecular markers and microskeletal traits. e751 PeerJ Journal Article
2015 Gibbin, E. M., Putnam, H. M., Gates, R. D., Nitschke, M. R., Davy, S. K. Species-specific differences in thermal tolerance may define susceptibility to intracellular acidosis in reef corals. 717-723 Marine Biology Journal Article
2015 Hansell, D. A., Carlson, C. A. London, England, U.K. Biogeochemistry of marine dissolved organic matter. Academic Press LTD-Elsevier Science LTD 693 Book
2015 Herdman, L. M. M., Hench, J. L., Monismith, S. G. Heat balances and thermally-driven lagoon-ocean exchanges on a tropical coral reef system (Moorea, French Polynesia). 1233-1252 Journal of Geophysical Research: Oceans Journal Article
2015 Hillard, H. The role of Sargassum pacificum in ocean acidification effects on corals. . Biology Thesis or Dissertation
2015 Holbrook, S. J., Schmitt, R. J., Messmer, V., Brooks, A. J., Srinivasan, M., Munday, P. L., Jones, G. P. Reef fishes in biodiversity hotspots are at greatest risk from loss of coral species. e0124054 PLoS One Journal Article
2015 Kearney, M. R., Domingos, T., Nisbet, R. M. Dynamic energy budget theory: An efficient and general theory for ecology. 341-341 Biological Bulletin Journal Article
2015 Lenihan, H. S., Hench, J. L., Holbrook, S. J., Schmitt, R. J., Potoski, M. Hydrodynamics influence coral performance through simultaneous direct and indirect effects. 1540-1549 Ecology Journal Article
2015 Pratchett, M. S., Anderson, K. D., Hoogenboom, M. O., Widman, E., Baird, A. H., Pandolfi, J. M., Edmunds, P. J., Lough, J. M. Spatial, temporal and taxonomic variation in coral growth-implications for the structure and function of coral reef ecosystems. 215-295 Oceanography and marine biology: An Annual Review Book Chapter
2015 Putnam, H. M., Gates, R. D. Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions. 2365-2372 Journal of Experimental Biology Journal Article
2015 Rivest, E. B., Gouthier T. C. Complex environmental forcing across the biogeographical range of coral populations. e0121742 PLoS One Journal Article
2015 Rivest, E. B., Hofmann, G. E. Effects of temperature and pCO2 on lipid use and biological parameters of planulae of Pocillopora damicornis. 43-52 Journal of Experimental Marine Biology and Ecology Journal Article
2015 Roth, M. S., Padilla-Gamino, J. L., Pochon, X., Bidigare, R. R., Gates, R. D., Smith, C. M., Spalding, H. L. Fluorescent proteins in dominant mesophotic reef-building corals. 63-79 Marine Ecology Progress Series Journal Article
2015 Sogin, E. M. Development and application of metabolomics for reef-building corals. 133 Zoology Thesis or Dissertation
2015 Treibitz, T., Neal, B. P., Kline, D. I., Beijbom, O., Roberts, P. L. D., Mitchell, B. G., Kriegman, D. Wide Field-of-View Fluorescence Imaging of Coral Reefs 7694 Scientific Reports Journal Article
2015 van Oppen, M. J. H., Oliver, J. K., Putnam, H. M., Gates, R. D. Building coral reef resilience through assisted evolution. 2307-2313 Proceedings of the National Academy of Sciences Journal Article
2014 Adam, T. C., Brooks, A. J., Holbrook, S. J., Schmitt, R. J., Washburn, L., Bernardi, G. How will coral reef fish communities respond to climate-driven disturbances? Insight from landscape-scale perturbations. 285-296 Oecologia Journal Article
2014 Antoine, D., Babin , M., Berthon, J. F., Bricaud, A., Gentili, B., Loisel, H., Maritorena, S., Stramski, D. Shedding light on the sea: André Morel’s legacy to optical oceanography. 1-21 Annual Review of Marine Science Journal Article
2014 Beijbom, O., Saberian, M., Kriegman, D., Vasconcelos, N. Beijing, China Guess Averse Loss functions for cost-sensitive multiclass boosting. Journal of Machine Learning Research 9 31st International Conference on Machine Learning (ICML) 2014 Conference Proceeding
2014 Bowen, B. W., Shanker, K., Yasuda, N., Malay, M. C. D., von der Heyden, S., Paulay, G., Rocha, L. A., Selkoe, K. A., Barber, P H., Williams, S. T., Lessios, H. A., Crandall, E. D., Bernardi, G., Meyer, C. P., Carpenter, K. E., Toonen, R. J. Phylogeography unplugged: Comparative surveys in the genomic era. 13-46 Bulletin of Marine Science Journal Article
2014 Byrne, M., Hofmann, G. E. Calcification in a changing ocean: Perspectives on a virtual symposium in the Biological Bulletin. 167-168 Biological Bulletin Journal Article
2014 Cameron, C. M., Edmunds, P. J. Effects simulated fish predation on small colonies of massive Porites spp. and Pocillopora meandrina. 139-148 Marine Ecology Progress Series Journal Article
2014 Clausing, R. J., Annunziata, C., Baker, G., Lee, C., Bittick, S. J., Fong, P. Effects of sediment depth on algal turf height are mediated by interactions with fish herbivory on a fringing reef. 121-129 Marine Ecology Progress Series Journal Article
2014 Comeau, S., Edmunds, P. J., Spindel, N. B., Carpenter, R. C. Diel pCO2 oscillations modulate the response of the coral Acropora hyacinthus to ocean acidification. 99-111 Marine Ecology Progress Series Journal Article
2014 Comeau, S., Carpenter, R. C., Edmunds, P. J. Effects of irradiance on the response of the coral Acropora pulchra and the calcifying alga Hydrolithon reinboldii to temperature elevation and ocean acidification 28-35 Journal of Experimental Marine Biology and Ecology Journal Article
2014 Comeau, S., Carpenter, R. C., Nojiri, Y., Putnam, H. M., Sakai, K., Edmunds, P. J. Pacific-wide contrast highlights resistance of reef calcifiers to ocean acidification. 20141339 Proceedings of the Royal Society B – Biological Sciences Journal Article
2014 Comeau, S., Edmunds, P. J., Spindel, N. B., Carpenter, R. C. Fast coral reef calcifiers are more sensitive to ocean acidification in short-term laboratory incubations 1081-1091 Limnology and Oceanography Journal Article
2014 Comeau, S., Edmunds, P. J., Lantz, C. A., Carpenter, R. C. Water flow modulates the response of coral reef communities to ocean acidification. 6681 Scientific Reports Journal Article
2014 Dornelas, M., Gotelli, N. J., McGill, B., Shimadzu, H., Moyes, F., Sievers, C., Magurran, A. E. Assemblage time series revel biodiversity change but not systematic loss. 296-299 Science Journal Article
2014 Edmunds, P. J. Is acclimation beneficial to scleractinian corals, Porites spp.? 1531-1542 Marine Biology Journal Article
2014 Edmunds, P. J., Pochon, X., Levitan, D. R., Yost, D. M., Belcaid, M., Putnam, H. M., Gates, R. D. Long-term changes in Symbiodinium communities in Orbicella annularis in St. John, US Virgin Islands 129-144 Marine Ecology Progress Series Journal Article
2014 Edmunds, P. J., Gray, S. C. The effects of storms, heavy rain, and sedimentation on the shallow coral reefs of St. John, US Virgin Islands 143-158 Hydrobiologia Journal Article
2014 Edmunds, P. J., Burgess, S. C., Putnam, H. M., Baskett, M. L., Bramanti, L., Fabina, N. S., Han, X., Lesser, M. P., Madin, J. S., Wall, C. B., Yost, D. M., Gates, R. D. Evaluating the causal basis of ecological success within the scleractinia: an integral projection model approach 2719-2734 Marine Biology Journal Article
2014 Edmunds, P. J., Nozawa, Y., Villanueva, R. D. Refuges modulate coral recruitment in the Caribbean and the Pacific. 78-84 Journal of Experimental Marine Biology and Ecology Journal Article
2014 Edmunds, P. J. Large numbers of Acropora palmata grow in shallow water in St. John, US Virgin Islands. 999-1000 Bulletin of Marine Science Journal Article
2014 Edmunds, P. J., Adjeroud, M. , Baskett, M. L., Baums, I. B., Budd, A. F., Carpenter, R. C., Fabina, N. S., Fan, T. - Y., Franklin, E. C., Gross, E. C., Han, X., Jacobson, L. M., Klaus, J. S., McClanahan, T. R., O’Leary, J. K., van Oppen, M. J. H., Pochon, X., Putnam, H. M., Smith, T. B., Stat, M. I., Sweatman, H., van Woesik, R., Gates, R. D. Persistence and change in community composition of reef corals through past, present, and future climates e107525 PLoS One Journal Article
2014 Edmunds, P. J. Landscape-scale variation in coral reef community structure in the United States Virgin Islands. 137-152 Marine Ecology Progress Series Journal Article
2014 Edmunds, P. J., Wall, C. B. Evidence that high pCO2 affects protein metabolism in tropical reef corals 68-77 Marine Biology Journal Article
2014 Gibbin, E. M., Putnam, H. M., Davy, S. K., Gates, R. D. Intracellular pH and its response to CO2-driven seawater acidification in symbiotic versus non-symbiotic coral cells. 1963-1969 Journal of Experimental Biology Journal Article
2014 Gowan, J. C., Tootell, J. S., Carpenter, R. C. Northridge, CA The effects of water flow and sedimentation on interactions between massive Porites and algal turf. California State University 651-663 Coral Reefs Thesis or Dissertation
2014 Hillard, H., Carpenter, R. C. Acidification and algae: do they have interactive effects on corals? E91-E91 Society of Integrative and Comparative Biology Annual Meeting 2014 Conference Proceeding
2014 Johnson, M., Moriarty, V., Carpenter, R. C. Acclimatization of the crustose coraline alga Porolithon onkodes to variable pCO2. e87678 PLoS One Journal Article
2014 Kelly, L. W., Williams, G. J., Barott, K. L., Carlson, C. A., Dinsdale, E. A., Edwards, R. A., Haas, A. F., Haynes, M., Lim, Y. W., McDole, T., Nelson, C. E., Sala, E., Sandin, S. A., Smith, J. E., Vermeij, M. J. A., Youle, M., Rohwer, F. Local genomic adaption of coral and algal-associated microbiomes to gradients of natural variability and anthropogenic stressors. 10227-10232 Proceedings of the National Academy of Sciences Journal Article
2014 Keyse, J., Crandall, E. D., Toonen, R. J., Meyer, C. P., Treml, E. A., Riginos, C. The scope of published population genetic data for Indo-Pacific marine fauna and future research opportunities in the region. 47-78 Bulletin of Marine Science Journal Article
2014 Leichter, J. J., Stokes, M. D., Vilchis, L. I., Fiechter, J. Regional synchrony of tempertaure variation and internal wave forcing along the Florida Keys reef tract. 548-558 Journal of Geophysical Research: Oceans Journal Article
2014 Lenz, E. A. Northridge, CA An ecological and physiological assessment of tropical coral reefs to past and predicted disturbances. California State University Biology Thesis or Dissertation
2014 Lenz, E. A., Brown, D. B., Didden, C., Arnold, A., Edmunds, P. J. The distribution of hermit crabs and their gastropod shells on shallow reefs off St. John, US Virgin Islands 681-692 Bulletin of Marine Science Journal Article
2014 Levitan, D. R., Edmunds, P. J., Levitan, K. E. What makes a species common? No evidence of density-dependent recruitment or mortality of the sea urchin Diadema antillarum after the 1983-1984 mass mortality. 117-128 Oecologia Journal Article
2014 Marti-Puig, P., Forsman, Z. H., Haverkort-Yeh, R. D., Knapp, I. S. S., Maragos, J. E., Toonen, R. J. Extreme phenotypic polymorphism in the coral genus Pocillopora; micro-morphology corresponds to mitochondrial groups, while colony morphology does not 211-231 Bulletin of Marine Science Journal Article
2014 Muller, E.B., Nisbet, R. M. Dynamic energy budget modeling reveals the potential of future growth and calcification for the coccolithophore Emiliania huxleyi in an acifified ocean. 2031-2038 Global Change Biology Journal Article
2014 Padilla-Gamino, J. L. Kupe and the corals - English/Spanish edition Taylor Trade Publishing 32 NSF Long Term Ecological Research Network Children's Book Series Book
2014 Padilla-Gamino, J. L., Hedouin, L., Waller, R. G., Smith, D., Truong, W., Gates, R. D. Sedimentation and the reproductive biology of the Hawaiian reef-building coral Montipora capitata 8-18 Biological Bulletin Journal Article
2014 Padilla-Gamino, J. L. Kupe and the corals - English electronic edition Taylor Trade Publishing 32 NSF Long Term Ecological Research Network Children's Book Series Book
2014 Padilla-Gamino, J. L. Kupe and the corals - English/Hawaiian edition Taylor Trade Publishing 32 NSF Long Term Ecological Research Network Children's Book Series Book
2014 Padilla-Gamino, J. L. Kupe and the corals - French/Paumoto electronic edition Taylor Trade Publishing 32 NSF Long Term Ecological Research Network Children's Book Series Book
2014 Padilla-Gamino, J. L. Kupe and the corals - English/Tahitian edition Taylor Trade Publishing 32 NSF Long Term Ecological Research Network Children's Book Series Book
2014 Padilla-Gamino, J. L. Kupe and the corals - English edition Taylor Trade Publishing 32 NSF Long Term Ecological Research Network Children's Book Series Book
2014 Padilla-Gamino, J. L. Kupe and the corals - French/Tahitian edition Taylor Trade Publishing 32 NSF Long Term Ecological Research Network Children's Book Series Book
2014 Pochon, X., Gates, R. D., Vik, D., Edmunds, P. J. Molecular characterization of symbiotic algae (Symbiodinium spp.) in soritid foraminifera (Sorites orbiculus) and a scleractinian coral (Orbicella annularis) from St John, US Virgin Islands 2307-2318 Marine Biology Journal Article
2014 Pochon, X., Putnam, H. M., Gates, R. D. Multi-gene analysis of Symbiodinium dinoflagellates: a perspective on rarity, symbiosis, and evolution. e394 PeerJ Journal Article
2014 Poray, A. K., Carpenter, R. C. Distributions of coral reef macroalgae in a back reef habitat in Moorea, French Polynesia 67-76 Coral Reefs Journal Article
2014 Rivest, E. B., Hofmann, G. E. Responses of the metabolism of the larvae of Pocillopora damicornis to ocean acidification and warming. e96172 PLoS One Journal Article
2014 Rivest, E. B. Santa Barbara The effects of elevated ocean acidity and temperature on the physiological integrity of the larvae of the cauliflower coral, Pocillopora damicornis. University of California 313 Ecology, Evolution and Marine Biology Thesis or Dissertation
2014 Sogin, E. M., Anderson, P., Williams, P., Chen, C. -S., Gates, R. D. Application of 1H-NMR metabolomic profiling for reef-building corals. e111274 PLoS One Journal Article
2014 Stier, A. C., Hanson, K. M., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Predation and landscape characteristics independently affect reef fish community organization. 1294-1307 Ecology Journal Article
2014 Tootell, J. S., Steele, M. A. Vermetid gastropods reduce foraging by herbivorous fishes on algae on coral reefs. 1145-1151 Coral Reefs Journal Article
2014 Valentino, L. M. The effects of ocean acidification on bioerosion in the back reef of Moorea, French Polynesia. Biology
2014 von der Heyden, S., Beger, M., Toonen, R. J., van Herwerden, L., Juinio-Menez, M. A., Ravago-Gotanco, R., Fauvelot, C., Bernardi, G. The application of genetics to marine management and conservation: examples from the Indo-Pacific 123-158 Bulletin of Marine Science Journal Article
2014 Wall, C. B., Fan, T. - Y., Edmunds, P. J. Ocean acidification has no effect on thermal bleaching in the coral Seriatopora caliendrum. 119-130 Coral Reefs Journal Article
2014 Yau, A. J., Lenihan, H. S., Kendall, B. E. Fisheries management priorities vary with self-recruitment in sedentary marine populations. 1490-1504 Ecological Applications Journal Article
2014 Zamudio, S. L., Edmunds, P. J. Northridge, CA Impacts of temperature-induced maternal effects on larval phenotype, settlement, and post-settlement growth of brooding scleractinian corals. California State University Biology Thesis or Dissertation
2013 Alldredge, A.L., Carlson, C. A., Carpenter, R.C. Sources of organic carbon to coral reef flats. 108-113 Oceanography Journal Article
2013 Alldredge, A.L., Holbrook, S. J., Schmitt, R. J., Brooks, A. J., Stewart, H. L. Skeletal growth of four scleractinian corals is not enhanced by in situ mesozooplankton enrichment. 143-153 Marine Ecology-Progress Series Journal Article
2013 Bramanti, L., Edmunds, P. J. San Francisco, CA Demographic models can forcast climate change effects on scleractinian corals: the Pocillopora damicornis case study. Oxford University Press E22-E22 Society of Integrative and Comparative Biology Annual Meeting 2013 Conference Proceeding
2013 Brown, D. J. Northridge, CA Effects of ocean acidification on the primary framework builders of coral reefs. California State University 89 Biology Thesis or Dissertation
2013 Brown, A. L., Carpenter, R. C. Water-flow mediated oxygen dynamics within massive Porites-algal turf interactions. 1-10 Marine Ecology Progress Series Journal Article
2013 Brown, D. B., Edmunds, P. J. Long-term changes in the population dynamics of the Caribbean hydrocoral Millepora spp. 62-70 Journal of Experimental Marine Biology and Ecology Journal Article
2013 Carr, M. H., Malone, D. P., Hixon, M. A., Holbrook, S. J., Schmitt, R. J. How SCUBA changed our understanding of nature: underwater breakthroughs in reef fish ecology. 157-167 Smithsonian Contributions to the Marine Sciences Journal Article
2013 Comeau, S., Edmunds, P. J., Spindel, N. B., Carpenter, R. C. The responses of eight coral reef calcifiers to increasing partial pressure of CO2 do not exhibit a tipping point. 388-398 Limnology and Oceanography Journal Article
2013 Comeau, S., Carpenter, R. C., Edmunds, P. J. Response to: Coral reef calcification: carbonate, bicarbonate and proton flux under conditions of increasing ocean acidification. 20131153 Proceedings of the Royal Society B – Biological Sciences Journal Article
2013 Comeau, S., Carpenter, R. C., Edmunds, P. J. Coral reef calcifiers buffer their response to ocean acidification using both bicarbonate and carbonate. 20122374 Proceedings of the Royal Society B – Biological Sciences Journal Article
2013 Comeau, S., Carpenter, R. C., Edmunds, P. J. Effects of feeding and light intensity on the response of the coral Porites rus to ocean acidification. 1127-1134 Marine Biology Journal Article
2013 Cumbo, V. R., Edmunds, P. J., Wall, C. B., Fan, T. - Y. Brooded coral larvae differ in their response to high temperature and elevated pCO2 depending on the day of release. 2903-2917 Marine Biology Journal Article
2013 Cumbo, V. R., Fan, T. -Y., Edmunds, P. J. Effects of exposure duration on the response of Pocillopora damicornis larvae to elevated temperature and high pCO2. 100-107 Journal of Experimental Marine Biology and Ecology Journal Article
2013 Dufault, A. M., Ninokawa, A., Bramanti, L., Cumbo, V. R., Fan, T. -Y., Edmunds, P. J. The role of light in mediating the effects of ocean acidification on coral calcification. 1570-1577 Journal of Experimental Biology Journal Article
2013 Edmunds, P. J., Fan, T. - Y. San Francisco, CA Evidence that high pCO2 affects coral recruits through perturbed protein metabolism. Oxford University Press E60-E60 Society of Integrative and Comparative Biology Annual Meeting 2013 Conference Proceeding
2013 Edmunds, P. J., Carpenter, R. C., Comeau, S. Understanding the threats of ocean acidification to coral reefs. 149-152 Oceanography Journal Article
2013 Edmunds, P. J. Decadal-scale changes in the community structure of coral reefs in St. John, U.S. Virgin Islands. 107-123 Marine Ecology-Progress Series Journal Article
2013 Edmunds, P. J. , Cumbo, V. R., Fan, T. - Y. Metabolic costs of larval settlement and metamorphosis in the coral Seriatopora caliendrum under ambient and elevated pCO2. 33-38 Journal of Experimental Marine Biology and Ecology Journal Article
2013 Fabina, N. S., Putnam, H. M., Franklin, E. C., Stat, M., Gates, R. D. Symbiotic specificity, association patterns, and function determine community responses to global changes: Defining critical research areas for coral-Symbiodinium symbioses. 3306-3316 Global Change Biology Journal Article
2013 Farrar, C. E., , Forsman, Z. H., Gates, R. D., Leong, J. A. C., Toonen, R. J. Observing the coral symbiome using laser scanning confocal microscopy. Science Journal Article
2013 Forsman, Z., Johnston, E. C., Brooks, A. J., Adam, T. C., Toonen, R. J. Genetic evidence for regional isolation of Pocillopora corals from Moorea. 153-155 Oceanography Journal Article
2013 Haas, A. F., Nelson, C. E., Rohwer, F., Wegley-Kelly, L., Quistad, S. D., Carlson, C. A., Leichter, J. J., Hatay, M., Smith, J. E. Influence of coral and algal exudates on microbially mediated reef metabolism. e108 PeerJ Journal Article
2013 Han, X. Santa Barbara Herbivore community dynamics and functional compositions in Moorea, French Polynesia. University of California 130 Ecology, Evolution and Marine Biology Thesis or Dissertation
2013 Hédouin, L., Gates, R. D. Assessing fertilization success of the coral Montipora capitata under copper exposure: does the night of spawning matter? 221-224 Marine Pollution Bulletin Journal Article
2013 Hench, J. L., Rosman, J. H. Observations of spatial flow patterns at the coral colony scale on a shallow reef flat. 1142-1156 Journal of Geophysical Research: Oceans Journal Article
2013 Hofmann, G. E., Blanchette, C. A., Rivest, E. B., Kapsenberg, L. Taking the pulse of marine ecosystems: The importance of coupling long-term physical and biological observations in the context of global change biology. 140-148 Oceanography Journal Article
2013 Leichter, J. J., Alldredge, A. L., Bernardi, G., Brooks, A. J., Carlson, C. A., Carpenter, R. C., Edmunds, P. J., Fewings, M. R., Hanson, K. M., Hench, J. L., Holbrook, S. J., Nelson, C. E., Schmitt, R. J., Toonen, R. J., Washburn, L., Wyatt, A. S. J. Biological and physical interactions on a tropical island coral reef: Transport and retention processes on Moorea, French Polynesia. 52-63 Oceanography Journal Article
2013 Lenz, E. A., Edmunds, P. J. San Francisco, CA Evidence that octocorals are increasing in population density in the Caribbean. Oxford University Press E317-E317 Society of Integrative and Comparative Biology Annual Meeting 2013 Conference Proceeding
2013 Lesser, M. P., Stat, M., Gates, R. D. The endosymbiotic dinoflagellates (Symbiodinium sp.) of corals are parasites and mutualists. 603-611 Coral Reefs Journal Article
2013 Mayfield, A. B., Fan, T. - Y., Chen, C. -S. Physiological acclimation to elevated temperature in a reef-building coral from an upwelling environment. 909-921 Coral Reefs Journal Article
2013 Monismith, S. G., Herdman, L. M. M., Ahmerkamp, S. H., Hench, J. L. Wave transformation and wave-driven flow across a steep coral reef. 1356-1379 Journal of Physical Oceanography Journal Article
2013 Nelson, C. E., Goldberg, S. J., Wegley Kelly, L., Haas, A. F., Smith, J. E., Rohwer, F., Carlson, C. A. Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages. 962-979 ISME Journal Journal Article
2013 Nielsen, J. A. Santa Barbara Effects of density on behaviorally-mediated tradeoffs between growth and survivorship. University of California 59 Ecology, Evolution and Marine Biology Thesis or Dissertation
2013 Padilla-Gamino, J. L., Bidigare, R. R., Barshis, D. J., Alamaru, A., Hedouin, L., Hernandez-Pech, X., Kandel, F., Soon, S L., Roth, M. S., Rodrigues, L. J., Grottoli, A. G., Portocarrero, C., Wagenhauser, S. A., Buttler, F., Gates, R. D. Are all eggs created equal? A case study from the Hawaiian reef-building coral Montipora capitata. 137-152 Coral Reefs Journal Article
2013 Page, H. M., Brooks, A. J., Kulbicki, M., Galzin, R., Miller, R. J., Reed, D., Schmitt, R. J., Holbrook, S. J., Koenigs, C. Stable isotopes reveal trophic relationships and diet of consumers in temperate kelp forest and coral reef ecosystems. 180-189 Oceanography Journal Article
2013 Putnam, H. M., Mayfield, A. B., Fan, T. - Y., Chen, C.-S., Gates, R. D. The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperatures and pCO2. 2157-2173 Marine Biology Journal Article
2013 Rivest, E. B., Chen, C. -S., Fan, T. -Y. , Li, H. -H., Edmunds, P. J., Hofmann, G. E. San Francisco, CA Energetic consequences of ocean acidification and warming for coral larvae. Oxford University Press E360-E360 Society of Integrative and Comparative Biology Annual Meeting 2013 Conference Proceeding
2013 Siegel, D. A., Behrenfeld, M. J., Maritorena, S., McClain, C. R., Antoine, D., Bailey, S. W., Bontempi, P. S., Boss, E. S., Dierssen, H. M., Doney, S. C., Eplee Jr., R. E., Evans, R. H., Feldman, G. C., Fields, E., Franz, B. A., Kuring, N. A., Mengelt, C., Nelson, N. B., Patt, F. S., Robinson, W. D., Sarmiento, J. L., Swan, C. M., Werdell, P. J., Westberry, T. K., Wilding, J. G., Yoder, J. A. Regional to global assessments of phytoplankton dynamics from the SeaWiFS mission. 77-91 Remote Sensing of Environment Journal Article
2013 Smith, J. E., Price, N. N., Nelson, C. E., Haas, A. F. Coupled changes in oxygen concentration and pH caused by metabolism of benthic coral reef organisms. 2437-2447 Marine Biology Journal Article
2013 Stat, M., Pochon, X., Franklin, E. C. , Bruno, J. F., Casey, K. S., Selig, E. R., Gates, R. D. The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress. 1317-1329 Ecology and Evolution Journal Article
2013 Stewart, H. L., Price, N. N., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Determinants of the onset and strength of mutualistic interactions between branching corals and associate crabs. 155-163 Marine Ecology Progress Series Journal Article
2013 Stier, A. C., Geange, S. W., Hanson, K. M., Bolker, B. M. Predator density and timing of arrival affect reef fish community assembly. 1057-1068 Ecology Journal Article
2013 Thompson, A. R., Adam, T. C., Hultgren, K. M., Thacker, C. E. Ecology and evolution affect network structure in an intimate marine mutualism. E58-E72 The American Naturalist Journal Article
2013 Tootell, J. Northridge, CA Processes affecting the grazing, distribution, behavior, and condition of herbivorous fishes on coral reefs. California State University Biology Thesis or Dissertation
2013 Treibitz, T., Neal, B. P., Kline, D. I., Beijbom, O., Roberts, P. L. D., Mitchell, B. G., Kriegman, D. San Diego, CA Wide field-of-view daytime fluorescence imaging of coral reefs. IEEE, 345 E 47TH ST, NEW YORK, NY 10017 USA 1-5 Oceans '13 2013 Conference Proceeding
2013 Wall, C. B., Edmunds, P. J. In situ effects of low pH and elevated HCO3- on juvenile massive Porites spp. in Moorea, French Polynesia 92-101 Biological Bulletin Journal Article
2013 Wall, C. B., Edmunds, P. J. San Francisco, CA Elevated pCO2 increases ammonium excretion in juvenile colonies of the scleractinian Seritopora caliendrum. Oxford University Press E389-E389 Society of Integrative and Comparative Biology Annual Meeting 2013 Conference Proceeding
2013 Werdell, P.J., , Franz, B. A., Bailey, S. W., Feldman, G. C., Boss, E., Brando, V. E., Dowell, M., Hirata, T., Lavender, S. J., Lee, Z., Loisel, H. , Maritorena, S., Mélin, F., Moore, T. S., Smyth, T. J., Antoine, D., Devred, E., d’Andon, O. H. F., Mangin, A. Generalized ocean color inversion model for retrieving marine inherent optical properties. 2019-2037 Applied Optics Journal Article
2013 Zamudio, S. L., Bramanti, L., Edmunds, P.J. San Francisco, CA Temperature-induced maternal effects on the phenotype of larvae released by the brooding coral Pocillopora damicornis. Oxford University Press E233-E233 Society of Integrative and Comparative Biology Annual Meeting 2013 Conference Proceeding
2012 Adam, T. C., Horii, S. S. Patterns of resource-use and competition for mutualistic partners between two species of obligate cleaner fish. 1149-1154 Coral Reefs Journal Article
2012 Adam, T. C. Mutualistic cleaner fish initiate trait-mediated indirect interactions on coral reefs by influencing the behavior of coral predators. 692-700 Journal of Animal Ecology Journal Article
2012 Beijbom, O., Edmunds, P.J., Kline, D. I., Mitchell, B. G., Kriegman, D. Providence, R.I. Automated annotation of coral reef survey images. IEEE Conferences 8 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) 2012 Conference Proceeding
2012 Beldade, R., Holbrook, S. J., Schmitt, R. J., Planes, S., Malone, D., Bernardi, G. Larger female fish contribute disproportionately more to self-replenishment. 2116-2121 Proceedings of the Royal Society B – Biological Sciences Journal Article
2012 Bergsma, G. S. Epibiotic mutualists alter coral susceptibility and response to biotic disturbance through cascading trait-mediated indirect interactions. 461-469 Coral Reefs Journal Article
2012 Bergsma, G. S. Coral mutualists enhance fish abundance and diversity through a morphology-mediated facilitation cascade. 151-161 Marine Ecology-Progress Series Journal Article
2012 Bernardi, G., Beldade, R., Holbrook, S. J., Schmitt, R. J. Full-sibs in cohorts of newly settled coral reef fishes. e44953 PLoS One Journal Article
2012 Brown, A. Northridge, CA The influence of water flow on mechanisms underlying coral-algal interactions. California State University Biology Thesis or Dissertation
2012 Buenau, K. E., Price, N. N., Nisbet, R. M. Size dependence, facilitation, and microhabitats mediate space competition between coral and crustose coralline algae in a spatially explicit model. 23-33 Ecological Modelling Journal Article
2012 Collin, A., Hench, J. L., Planes, S. Cairns, Australia A novel spaceborne proxy for mapping coral cover. James Cook University 5 Proceedings of the 12th International Coral Reef Symposium. 2012 Conference Proceeding
2012 Collin, A., Hench, J. L. Towards deeper measurements of tropical reefscape structure using the WorldView-2 spaceborne sensor. 1425-1447 Remote Sensing Journal Article
2012 Colvard, N. B., Edmunds, P. J. Macroalgae on shallow tropical reefs reduce the availability of reflected light for use in coral photosynthesis.  1019-1033 Bulletin of Marine Science Journal Article
2012 Cumbo, V. R., Fan, T. - Y., Edmunds, P. J. Physiological development of brooded larvae from two pocilloporid corals in Taiwan. 2853-2866 Marine Biology Journal Article
2012 Cumbo, V. R., Edmunds, P. J., Fan, T. -Y. Scleractinian corals capture zooplankton within days of settlement and metamorphosis. 1155 Coral Reefs Journal Article
2012 Dufault, A. M., Cumbo, V. R., Fan, T. - Y., Edmunds, P. J. Effects of diurnally oscillating pCO2 on the calcification and survival of coral recruits. 2951-2958 Proceedings of the Royal Society B – Biological Sciences Journal Article
2012 Dufault, A. M. The effects of ocean acidification on the physiology of coral recruits. Biology Thesis or Dissertation
2012 Edmunds, P. J., Putnam, H. M., Gates, R. D. Photophysiological consequences of vertical stratification of Symbiodinium in tissue of the coral Porites lutea 226-235 Biological Bulletin Journal Article
2012 Edmunds, P.J., Brown, D. B., Moriarty, V. Interactive effects of ocean acidification and temperature on two scleractinian corals from Moorea, French Polynesia. 2173-2183 Global Change Biology Journal Article
2012 Edmunds, P.J. Effect of pCO2 on the growth, respiration, and photophysiology of massive Porites spp. in Moorea, French Polynesia. 2149-2160 Marine Biology Journal Article
2012 Fabina, N. S., Putnam, H. M., Franklin, E. C., Stat, M., Gates, R. D. Transmission mode predicts specificity and interaction patterns in coral-Symbiodinium networks. e44970 PLoS One Journal Article
2012 Franklin, E. C., Stat, M., Pochon, X., Putnam, H. M., Gates, R. D. GeoSymbio: A hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses. 369-373 Molecular Ecology Resources Journal Article
2012 Gowan, J. C., Tootell, J. S. The effects of water flow and sedimentation on interactions between massive Porites and algal turf. Biology Journal Article
2012 Jaroensutasinee, K., Jaroensutasinee, M., Bainbridge, S., Fountain, T., Holbrook, S. J., Nekrasov, M. Cairns, Australia CREON-Integrating disparate sources of remote coral reef sensor data. James Cook University 5 Proceedings of the 12th International Coral Reef Symposium. 2012 Conference Proceeding
2012 Johnson, M. D., Carpenter, R. C. Ocean acidification and warming decrease calcification in the crustose coralline alga Hydrolithon onkodes and increases susceptibility to grazing. 94-101 Journal of Experimental Marine Biology and Ecology Journal Article
2012 Krueger, T., Gates, R.D. Cultivating endosymbionts-host environmental mimics support the survival of Symbiodinium C15 ex hospite. 169-176 Journal of Experimental Marine Biology and Ecology Journal Article
2012 Leichter, J. J., Stokes, M. D., Hench, J. L., Witting, J. , Washburn, L. The island-scale internal wave climate of Moorea, French Polynesia. C06008 Journal of Geophysical Research: Oceans Journal Article
2012 Mayfield, A. B., Chan, P. -H., Putnam, H. M., Chen, C.-S., Fan, T. -Y. The effects of a variable temperature regime on the physiology of the reef-building coral Seriatopora hystrix: results from a laboratory-based reciprocal transplant. 4183-4195 Journal of Experimental Biology Journal Article
2012 McCliment, E., Nelson, C., Carlson, C., Alldredge, A., Witting, J., Amaral-Zettler, L. An all-taxon microbial inventory of the Moorea coral reef ecosystem. 309-319 ISME Journal Journal Article
2012 Padilla-Gamiño, J. L., Pochon, X., Bird, C., Concepcion, G. T., Gates, R. D. From parent to gamete: vertical transmission of Symbiodinium (Dinophyceae) ITS2 sequence assemblages in the reef building coral Montipora capitata. e38440 PLoS One Journal Article
2012 Padilla-Gamino, J. L., Hanson, K. M., Stat, M., Gates, R. D. Phenotypic plasticity of the coral Porites rus: acclimatization responses to a turbid environment. 71-80 Journal of Experimental Marine Biology and Ecology Journal Article
2012 Pochon, X., Putnam, H. M., Burki, F., Gates, R. D. Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium. e29816 PLoS One Journal Article
2012 Putnam, H. M. Manoa Resilience and acclimatization potential of reef corals under predicted climate change stressors. University of Hawai'i, Manoa 144 Zoology Thesis or Dissertation
2012 Putnam, H. M., Stat, M., Pochon, X., Gates, R. D. Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals. 4352-4361 Proceedings of the Royal Society B – Biological Sciences Journal Article
2012 Siegel, D.A., , Antoine, D. , Behrenfeld, M. J., d’Andon, O. H. F., Fields, E., Franz, B. A., Goryl, P., Maritorena, S., McClain, C. R., Wang, M., Yoder, J. A. Global ocean phytoplankton. Bulletin of the American Meteorological Society S107-S110 State of the climate in 2011. Book Chapter
2012 Stat, M., Baker, A. C., Bourne, D. G., Correa, A. M. S., Forsman, Z., Huggett, M. J., Pochon, X., Skillings, D., Toonen, R. J., van Oppen, M. J. H., Gates, R. D. Amsterdam, Netherlands Molecular delineation of species in the coral holobiont. Academic Press 1-65 Advances in Marine Biology Book Chapter
2012 Wall, C. B. Northridge, CA The effects of ocean acidification and temperature on the physiology of juvenile scleractinian corals. California State University 152 Biology Thesis or Dissertation
2012 Yau, A. J.-Y., Fan, T.- Y. Size-dependent photosynthetic performance in the giant clam Tridacna maxima, a mixotrophic marine bivalve. 65-75 Marine Biology Journal Article
2011 Adam, T.C., Schmitt, R. J., Holbrook, S. J., Brooks, A. J., Edmunds, P.J., Carpenter, R.C., Bernardi, G. Herbivory, connectivity and ecosystem resilience: response of a coral reef to a large-scale perturbation e23717 PLoS One Journal Article
2011 Adam, T. C. High quality habitat and facilitation ameliorate competitive effects of prior residents on new settlers. 121-130 Oecologia Journal Article
2011 Ananthasubramaniam, B., Nisbet, R. M., Morse, D., Doyle, F. J. Integrate-and-fire models of insolation-driven entrainment of broadcast spawning in corals. 69-85 Theoretical Ecology Journal Article
2011 Antoine, D., Siegel, D. A., Kostadinov, T., Maritorena, S., Nelson, N. B., Gentili, B., Vellucci, V., Guillocheau, N Variability in optical particle backscattering in contrasting bio-optical oceanic regimes. 955-973 Limnology and Oceanography Journal Article
2011 Bergsma, G. S., Martinez, C. M. Mutualist-induced morphological changes enhance growth and survival of corals. 2267-2277 Marine Biology Journal Article
2011 Bestelmeyer, B. T., Ellison, A. M., Fraser, W. R., Gorman, K. B., Holbrook, S. J., Laney, C. M., Ohman, M. O., Peters, D. P. C., Pillsbury, F. C., Rassweiler, A., Schmitt, R. J., Sharma, S. Analysis of abrupt transitions in ecological systems. 129 Ecosphere Journal Article
2011 Buenau, K. E., Price, N. N., Nisbet, R. M. Local interactions drive size dependent space competition between coral and crustose coralline algae. 941-949 Oikos Journal Article
2011 Cameron, C. Northridge, CA The effects of partial mortality on corals in St. John, U.S. Virgin Islands and Moorea, French Polynesia. California State University Biology Thesis or Dissertation
2011 Colvard, N., Edmunds, P. J. Decadal-scale changes in abundance of non-scleractinian invertebrates on a Caribbean coral reef. 153-160 Journal of Experimental Marine Biology and Ecology Journal Article
2011 Edmunds, P. J., Putnam, H. M., Nisbet, R. M., Muller, E.B. Benchmarks in organism performance and their use in comparative analyses. 379-390 Oecologia Journal Article
2011 Edmunds, P.J., Cumbo, V, Fan, T.-Y. Effects of temperature on the respiration of brooded larvae from tropical reef corals. 2783-2790 Journal of Experimental Biology WOS:000293167300023 Journal Article
2011 Edmunds, P. J., Ross, C. L. M., Didden, C. High, but localized recruitment of Montastraea annularis complex in St. John, United States Virgin Islands. 123-130 Coral Reefs Journal Article
2011 Edmunds, P. J. Zooplanktivory ameliorates the effects of ocean acidification on the reef coral Porites spp. 2402-2410 Limnology and Oceanography Journal Article
2011 Eynaud, Y., Nisbet, R. M., Muller, E.B. Impact of excess and harmful radiation on energy budgets in sceractinian corals. 1315-1322 Ecological Modelling Journal Article
2011 Franklin, E. C., Stat, M., Pochon, X., Putnam, H. M., Gates, R. D. Santa Barbara Rapid development of a hybrid web application for synthesis science of Symbiodinium with Google Apps. University of California 44-48 Environmental Information Management Conference 2011 Conference Proceeding
2011 Gates, R. D., Ainsworth, T. D. The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals. 94-101 Journal of Experimental Marine Biology and Ecology Journal Article
2011 Goldenheim, W. M., Edmunds, P. Effects of flow and temperature on growth and photophysiology of scleractinian corals in Moorea, French Polynesia 270-279 Biological Bulletin Journal Article
2011 Green, D. H., Edmunds, P. J. Spatio-temporal variability of coral recruitment on shallow reefs in St John, US Virgin Islands. 220-229 Journal of Experimental Marine Biology and Ecology Journal Article
2011 Haas, A. F., Nelson, C. E., Wegley-Kelly, L., Carlson, C. A., Rohwer, F., Leichter, J. J., Wyatt, A., Smith, J. E. Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity. e27973 PLoS One Journal Article
2011 Hanson, K. San Diego, CA Planktivorous fish link coral reef and oceanic food webs: causes and consequences of landscape-level patterns in fish behavior, diet and growth. University of California Scripps Institution of Oceanography Thesis or Dissertation
2011 Hofmann, G. E., Smith, J. E., Johnson, K. S., Send, U, Levin, L.A., Micheli, F., Paytan, A., Price, N. N., Peterson, B., Takeshita, Y., Matson, P. G., Crook, E. D., Kroeker, K. J., Gambi, M. C., Rivest, E. B., Frieder, C. A., Yu, P. C., Martz, T.R. High-frequency dynamics of ocean pH: a multi-ecosystem comparison. e28983 PLoS One Journal Article
2011 Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Indirect effects of species interactions on habitat provisioning. 739-749 Oecologia WOS:000291606100017 Journal Article
2011 Jacobson, L. M. Northridge, CA Coral energetics: the metaboloic response to resource scarcity and subsequent cost of recovery. California State University 81 Biology Thesis or Dissertation
2011 Jaroensutasinee, M., Jaroensutasinee, K., Fountain, T., Nekrasov, M., Chumkiew, S., Noonsang, P. , Kuhapong, U., Bainbridge, S. Santa Barbara Coral sensor network at Racha Island, Thailand. University of California 82-86 Environmental Information Management Conference 2011 Conference Proceeding
2011 Johnson, M. Northridge, CA The effects of ocean acidification, elevated temperature and herbivory on tropical crustose coralline algae. California State University Biology Thesis or Dissertation
2011 Johnson, M. E. K., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Fish communities on staghorn coral: effects of habitat characteristics and resident farmerfishes. 429-448 Environmental Biology of Fishes WOS:000293297300006 Journal Article
2011 Kayal, M., Lenihan, H. S., Pau, C., Penin, L., Adjeroud, M. Associational refuges among corals mediate impacts of a crown-of-thorns starfish Acanthaster planci outbreak. 827-837 Coral Reefs WOS:000293536600035 Journal Article
2011 Lenihan, H. S., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Influence of corallivory, competition, and habitat structure on coral community shifts. 1959-1971 Ecology Journal Article
2011 Mayfield, A. B., Wang, L.H.., Tang, P.-C., Fan, T.- Y., Hsiao, Y.-Y., Tsai, C.-L., Chen, C.-S. Assessing the impacts of experimentally elevated temperature on the biological composition and molecular chaperone gene expression of a reef coral. e26529 PLoS One Journal Article
2011 Melack, J. M., Finzi, A. C., Siegal, D., MacIntyre, S., Nelson, C. E., Aufdenkampe, A. K., Pace, M. L. Improving biogeochemical knowledge through technical innovation. 37-43 Frontiers in Ecology and the Environment Journal Article
2011 Messmer, V., Jones, G. P., Munday, P. L., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Habitat biodiversity as a determinant of fish community structure on coral reefs. 2285-2298 Ecology Journal Article
2011 Mora, C., Aburto-Oropeza, O., Bocas, A. A., Ayotte, P. M., Banks, S., Bauman, A. G., Berger, M., Bessudo, S., Booth, D. J., Brokovich, E., Brooks, A. J., Chabanet, P., Cinner, J., Cortes, J., Cruz-Motta, J. J., Magana, A. C., DeMartini, E., Edgar, G. J., Feary, D. A., Ferse, S. C. A., Friedlander, A., Gaston, K. J., Gough, C., Graham, N. A. J., Green, A., Guzman, H., Kulbicki, M., Letourneur, Y., Perez, A. L., Loreau, M., Loya, Y., Martinez, C., Mascarenas-Osorio, I., Morove, T., Nadon, M.-O., Nakamura, Y., Paredes, G., Polunin, N., Pratchett, M. S., Bonilla, H. R., Rivera, F., Sala, E., Sandin, S., Soler, G., Stuart-Smith, R., Tessier, E., Tittensor, D. P., Tupper, M., Usseglio, P., Vigliola, L., Wantiez, L., Williams, I., Wilson, S.K., Zapata, F. A. Global human footprint on the linkage between biodiversity and ecosystem functioning in reef fishes. e1000606 PLoS Biology Journal Article
2011 Muller, E.B. Synthesizing units as modeling tool for photosynthesizing organisms with photoinhibition and nutrient limitation. 637-644 Ecological Modelling Journal Article
2011 Nelson, C. E., Alldredge, A.L., McCliment, E. A., Amaral-Zettler, L. A., Carlson, C. A. Depleted dissolved organic carbon and distinct bacterial communities in the water column of a rapid-flushing coral reef ecosystem. 1374-1387 ISME Journal Journal Article
2011 Padilla-Gamiño, J. L. Manoa Spawning dynamics and parental effects in the Hawaiian scleractinian coral Montipora capitata. University of Hawai'i, Manoa Zoology Thesis or Dissertation
2011 Padilla-Gamiño, J. L., Weatherby, T. M., Waller, R. G., Gates, R. D. Formation and structural organization of the egg-sperm bundle of the scleractinian coral Montipora capitata. 371-380 Coral Reefs Journal Article
2011 Putnam, H. M., Edmunds, P. J. The physiological response of reef corals to diel fluctuations in seawater temperature. 216-223 Journal of Experimental Marine Biology and Ecology Journal Article
2011 Rosman, J.H., Hench, J.L. A framework for understanding drag parameterizations for coral reefs Journal of Geophysical Research Journal Article
2011 Salerno, J. L., Reineman, D. R., Gates, R. D., Rappé, M. S. The effect of a sublethal temperature elevation on the structure of bacterial communities associated with the coral Porites compressa. 969173 Journal of Marine Biology Journal Article
2011 Siegel, D. A., Behrenfeld, M. J., Maritorena, S., O’Malley, R. T. , Fields, E., Blunden, J., Arndt, D. S., Baringer, M. O. Global ocean phytoplankton. Bulletin of the American Meteorological Society S105-S108 State of the climate in 2010 2011 Book Chapter
2011 Stat, M., Gates, R. D. Clade D Symbiodinium in scleractinian corals: a “nugget” of hope, a selfish opportunist, an ominous sign, or all of the above?  730715 Journal of Marine Biology Journal Article
2011 Stat, M., Bird, C. E., Pochon, X., Chasqui, L., Chauka, L. J., Concepcion, G. T., Logan, D., Takabayashi, M., Gates, R. D. Variation in Symbiodinium ITS2 sequence assemblages among coral colonies.  e15854 PLoS One Journal Article
2011 Swanson, S., Carpenter, R. C. Northridge, CA Species-specific effects of echinoids on coral reef benthic community structure in Moorea, French Polynesia. California State University 87 Biology Thesis or Dissertation
2011 Yau, A. J.-Y. Santa Barbara Size-Based Approaches to Modeling and Managing Local Populations: A Case Study Using an Artisanal Fishery for Giant Clams, Tridacna maxima. University of California 138 Donald Bren School of Environmental Science and Management Thesis or Dissertation
2010 Adam, T. C. Santa Barbara Cooperation in a cleaner fish mutualism and its ecological implications University of California Ecology, Evolution and Marine Biology Thesis or Dissertation
2010 Adam, T. C. Competition encourages cooperation: client fish receive higher quality service when cleaner fish compete 1183-1189 Animal Behaviour Journal Article
2010 Ainsworth, T. D., Thurber, R. V., Gates, R. D. The future of coral reefs - A microbial perspective 233-240 Trends in Ecology and Evolution Journal Article
2010 Barshis, D. J., Stillman, J. H., Gates, R. D., Toonen, R. J., Smith, L. W., Birkeland, C. Protein expression and genetic structure of the coral Porites lobata in an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity 1705-1720 Molecular Ecology Journal Article
2010 Baskett, M. L., Nisbet, R. M., Kappel, C. V., Mumby, P. J., Gaines, S. D. Conservation management approaches to protecting the capacity for corals to respond to climate change: a theoretical comparison 1229-1246 Global Change Biology Journal Article
2010 Brainard, R. E., Bainbridge, S., Brinkman, R., Eakin, C. M., Field, M., Gattuso, J. -P., Gledhill, D., Gramer, L., Green, A., Hendee, J., Hoeke, R. K., Holbrook, S. J., Hoegh-Guldberg, O., Lammers, M., Manzello, D., McManus, M., Moffitt, R., Monaco, M., Morgan, J., Obura, D., Planes, S., Schmitt, R. J., Steinberg, C., Sweatman, H., Vetter, O. J., Wilkinson, C., Wong, K. B. Venice, Italy An international network of coral reef ecosystem observing systems (I-CREOS) European Space Agency Special Publication Proceedings of OceanObs’09: Sustained Ocean Observations and Information for Society Book Chapter
2010 Colvard, N. Northridge, CA Description of the light microenvironment on tropical reefs and its influence on coral physiology. California State University Biology Thesis or Dissertation
2010 Colvard, N. B., Edmunds, P. J. Seattle, WA The physiological response of tropical reef corals to light reflected from the benthos. Oxford University Press e33 Society of Integrative and Comparative Biology Annual Meeting 2010 Conference Proceeding
2010 Edmunds, P. J., Leichter, J. J., Adjeroud, M. Landscape-scale variation in coral recruitment in Moorea, French Polynesia. 75-89 Marine Ecology-Progress Series Journal Article
2010 Edmunds, P. J. Population biology of Porites astreoides and Diploria strigosa on a shallow Caribbean reef. 87-104 Marine Ecology-Progress Series Journal Article
2010 Edmunds, P. J., Lenihan, H. S. Effect of sub-lethal damage to juvenile colonies of massive Porites spp. under contrasting regimes of temperature and water flow 887-897 Marine Biology Journal Article
2010 Green, D. H., Edmunds, P. J., Pochon, X., Gates, R. D. The effects of substratum type on the growth, mortality, and phytophysiology of juvenile corals in St. John, US Virgin Islands 18-29 Journal of Experimental Marine Biology and Ecology Journal Article
2010 Hench, J. L., Rosman, J. H. Analysis of bottom-track and compass error in a self-contained acoustic Doppler diver navigation console. 1229-1238 Journal of Atmospheric and Oceanic Technology Journal Article
2010 Hofmann, G. E., Barry, J. P., Edmunds, P. J., Gates, R. D., Hutchins, D. A., Klinger, T., Sewell, M. A. The effect of ocean acidification on calcifying organisms in marine ecosystems: an organism to ecosystem perspective. 127-147 Annual Review of Ecology, Evolution and Systematics Journal Article
2010 Hofmann, G. E., Todgham, A. E. Living in the now: Physiological mechanisms to tolerate a rapidly changing environment. 127-145 Annual Review of Physiology Journal Article
2010 Jacobson, L.M., Edmunds, P. J. Long-term changes in the concentration of zooplankton and particulate material over a fringing reef in St. John, US Virgin Islands. 763-772 Bulletin of Marine Science Journal Article
2010 Johnson, M. E. K. Santa Barbara Influence of staghorn coral on associated fish communities University of California 44 Ecology, Evolution and Marine Biology Thesis or Dissertation
2010 Kostadinov, T. S. , Siegel, D. A., Maritorena, S. Global variability of phytoplankton functional types from space assessment via the particle size distribution. 3239-3257 Biogeosciences Journal Article
2010 Lenihan, H. S., Edmunds, P. J. Response of Pocillopora verrucosa to corallivory varies with environmental conditions 51-63 Marine Ecology-Progress Series Journal Article
2010 Leray, M., Beldade, R., Holbrook, S. J., Schmitt, R. J., Planes, S., Bernardi, G. Allopatric divergence and speciation in coral reef fish: the three-spot dascyllus, Dascyllus trimaculatus, species complex. 1218-1230 Evolution Journal Article
2010 Lesser, M. P., Slattery, M., Stat, M., Ojimi, M., Gates, R. D., Grottoli, A. Photoacclimatization by the coral Montastraea cavernosa in the mesophotic zone: light, food, and genetics 990-1003 Ecology Journal Article
2010 Maritorena, S., d’Andon, O. H. F., Mangin, A., Siegel, D. A. Merged satellite ocean color data products using a bio-optical model: characteristics, benefits and issues. 1791-1804 Remote Sensing of Environment Journal Article
2010 Mayfield, A. B., Hsiao, Y.-Y., Fan, T.-Y., Chen, C.-S., Gates, R. D. Evaluating the temporal stability of stress-activated protein kinase and cytoskeleton gene expression in the Pacific reef corals Pocillopora damicornis and Seritopora hystrix. 215-222 Journal of Experimental Marine Biology and Ecology Journal Article
2010 Palmer, C. V., Gates, R. D. Skeletal Eroding Band in Hawaiian corals 469-469 Coral Reefs Journal Article
2010 Pochon, X., Stat, M., Takabayashi, M., Chasqui, L., Chauka, L. J., Logan, D. D. K., Gates, R. D. Comparison of endosymbiotic and free-living Symbiodinium (Dinophyceae) diversity in a Hawaiian reef environment 53-65 Journal of Phycology Journal Article
2010 Pochon, X. P., Gates, R.D. A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i 492-497 Molecular Phylogenetics and Evolution Journal Article
2010 Price, N. N. Habitat selection, facilitation, and biotic settlement cues affect distribution and performance of coral recruits in French Polynesia 747-758 Oecologia Journal Article
2010 Putnam, H. M., Edmunds, P. J., Fan, T.-Y. Effect of a fluctuating thermal regime on adult and larval reef corals 199-209 Invertebrate Biology Journal Article
2010 Thacker, C. E., Thompson, A. R., Adam, T. C., Chen, J. Phylogeny and character evolution in the Indo-Pacific genus Ctenogobiops (Gobiiformes:Gobiidae) 231-239 Icthyological Research Journal Article
2010 Weersing, K., Padilla-Gamino, J. L., Bruno, B. What microbe are you? 40-44 The Science Teacher Journal Article
2010 Wilson, S. K., Adjeroud, M., Bellwood, D. R., Berumen, M. L., Booth, D., Bozec, Y.-M., Chabanet, P., Cheal, A., Cinner, J., Depczynski, M., Feary, D. A., Gagliano, M., Graham, N. A. J., Halford, A. R., Halpern, B. S., Harborne, A. R., Hoey, A. S., Holbrook, S. J., Jones, G. P., Kulbicki, M., Letourneur, Y., De Loma, T. L., McClanahan, T., McCormick, M. I., Meekan, M. G., Mumby, P. J., Munday, P. L., Ohman, M. C., Pratchett, M. S., Riegl, B., Sano, M., Schmitt, R. J., Syms, C. Crucial knowledge gaps in current understanding of climate change impacts on coral reef fishes 894-900 Journal of Experimental Biology Journal Article
2010 Yancey, P. H., Heppenstall, M., Ly, S., Andrell, R. M., Gates, R. D., Carter, V.L., Hagedorn, M. Betaines and dimethylsulfoniopropionate as major osmolytes in Cnidaria with endosymbiotic dinoflagellates 167-173 Physiological and Biochemical Zoology Journal Article
2009 Adjeroud, M., Michonneau, F., Edmunds, P. J., Chancerelle, Y., de Loma, T. L., Penin, L., Thibaut, L., Vidal-Dupiol, J., Salvat, B., Galzin, R. Recurrent disturbances, recovery trajectories, and resilience of coral assemblages on a South Central Pacific reef 775-780 Coral Reefs  ISI:000268323800026 Journal Article
2009 Alldredge, A.L., King, J. M. Near-surface enrichment of zooplankton over a shallow back reef: Implications for coral reef food webs 895-908 Coral Reefs Journal Article
2009 Baskett, M. L., Gaines, S. D., Nisbet, R. M. Symbiont diversity may help coral reefs survive moderate climate change 3-17 Ecological Applications  ISI:000263516200002 Journal Article
2009 Beldade, R., Holbrook, S. J., Schmitt, R. J., Planes, S., Bernardi, G. Isolation and characterization of eight polymorphic microsatellite markers from the orange-fin anemonefish, Amphiprion chrysopterus 333-335 Conservation Genetics Resources Journal Article
2009 Bergsma, G. S. Tube-dwelling coral symbionts induce significant morphological change in Montipora. 143-150 Symbiosis Journal Article
2009 Bergsma, G. S. Santa Barbara Ecological effects of finger-forming coral symbionts University of California Ecology, Evolution and Marine Biology Thesis or Dissertation
2009 Buenau, K. E. Santa Barbara The shifting landscapes of competition: Modeling the roles of space, size, and facilitation in marine benthic communities University of California 111 Ecology, Evolution and Marine Biology Thesis or Dissertation
2009 Chan, Y. L., Pochon, X., Fisher, M. A., Wagner, D., Concepcion, G. T., Kahng, S., Toonen, R. J., Gates, R. D. Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris 21 BMC Ecology  Journal Article
2009 Edmunds, P. J. Effect of acclimatization to low temperature and reduced light on the response of reef corals to elevated temperature 1797-1808 Marine Biology  ISI:000268018700005 Journal Article
2009 Ferrier, G. A., Carpenter, R. C. Subtidal benthic heterogeneity: flow environment modification and impacts on marine algal community structure and morphology 115-129 Biological Bulletin Journal Article
2009 Fitt, W. K., Gates, R. D., Hoegh-Guldberg, O., Bythell, J. C., Jatkar, A., Grottoli, A. G., Gomez, M., Fisher, P., Lajuenesse, T. C., Pantos, O., Iglesias-Prieto, R., Franklin, D. J., Rodrigues, L. J., Torregiani, J. M., van Woesik, R., Lesser, M. P. Response of two species of Indo-Pacific corals, Porites cylindrica and Stylophora pistillata, to short-term thermal stress: The host does matter in determining the tolerance of corals to bleaching 102-110 Journal of Experimental Marine Biology and Ecology  ISI:000266897400004 Journal Article
2009 Fountain, T., Tilak, S., Shin, P., Holbrook, S. J., Schmitt, R. J., Brooks, A. J., Washburn, L., Salazar, D. Melbourne, Australia Digital Moorea cyberinfrastructure for coral reef monitoring IEEE Conferences 243-248 Proceedings of the Fifth International Conference on Intelligent Sensors, Sensor Networks and Information Processing 2009 Conference Proceeding
2009 Goldenheim, W. M. Northridge, CA The effects of flow and temperature over multiple time scales on scleractinian growth and photo-physiology in Moorea, French Polynesia California State University Biology  Thesis or Dissertation
2009 Hedouin, L., Reichelt-Brushett, A. J., Gates, R. D. Assessment of metals and a metalloid in sediments from Hawaiian coral reef ecosystems. 1759-1765 Marine Pollution Bulletin  Journal Article
2009 Kane, C. N., Brooks, A. J., Holbrook, S. J., Schmitt, R. J. The role of microhabitat preference and social organization in determining the spatial distribution of a coral reef fish 1-10 Environmental Biology of Fishes  ISI:000261967800001 Journal Article
2009 Leray, M., Beldade, R., Holbrook, S. J., Schmitt, R. J., Planes, S., Bernardi, G. Isolation and characterization of 13 polymorphic nuclear microsatellite primers for the widespread Indo-Pacific three-spot damselfish, Dascyllus trimaculatus, and closely related D. auripinnis 213-215 Molecular Ecology Resources  ISI:000262678900047 Journal Article
2009 Mayfield, A. B., Hirst, M. B., Gates, R. D. Gene expression normalization in a dual-compartment system: a real-time quantitative polymerase chain reaction protocol for symbiotic anthozoans 462-470 Molecular Ecology Resources  ISI:000263333100003 Journal Article
2009 Muehllehner, N., Edmunds, P. J. Ft Lauderdale, FL Effects of ocean acidification and increased temperature on skeletal growth of two scleractinian corals, Pocillopora meandrina and Porites rus Nova Southeastern University 57-61 Proceedings of the 11th International Coral Reef Symposium 2009 Conference Proceeding
2009 Muller, E. B., Doyle, F. J., Nisbet, R. M., Edmunds, P., Kooijman, S. Glascow, Scotland, U.K. Dynamic energy budgets of syntrophic symbiotic relationships between heterotrophic hosts and photoautotrophic symbionts S145-S145 Annual Meeting of the Society of Experimental Biology ISI:000267520700315 Conference Proceeding
2009 Muller, E. B., Kooijman, Salm, Edmunds, P. J., Doyle, F. J., Nisbet, R. M. Dynamic energy budgets in syntrophic symbiotic relationships between heterotrophic hosts and photoautotrophic symbionts 44-57 Journal of Theoretical Biology  ISI:000267084400006 Journal Article
2009 Olson, N. D., Ainsworth, T. D., Gates, R. D., Takabayashi, M. Diazotrophic bacteria associated with Hawaiian Montipora corals: Diversity and abundance in correlation with symbiotic dinoflagellates 140-146 Journal of Experimental Marine Biology and Ecology  ISI:000265466200005 Journal Article
2009 Palmer, C. V., Roth, M. S., Gates, R. D. Red Fluorescent Protein Responsible for Pigmentation in Trematode-Infected Porites compressa Tissues 68-74 Biological Bulletin  ISI:000263442100007 Journal Article
2009 Poray, A. K. Northridge, CA Spatial escape at a physiological cost: consequences for coral reef macroalgae inhabiting refugia from herbivores. California State University Biology Thesis or Dissertation
2009 Putnam, H. M., Edmunds, P. J. Ft Lauderdale, FL Responses of coral hosts and their algal symbionts to thermal heterogeneity Nova Southeastern University 393-397 Proceedings of the 11th International Coral Reef Symposium 2008 Conference Proceeding
2009 Schmitt, R. J., Holbrook, S. J., Brooks, A. J., Lape, J. C. P. Intraguild predation in a structured habitat: distinguishing multiple-predator effects from competitor effects 2434-2443 Ecology  ISI:000269025700012 Journal Article
2009 Spitler, M. I. Northridge, CA Factors influencing the distribution and abundance of the dominant macroalgal species on coral reefs in Moorea, French Polynesia. California State University Biology Thesis or Dissertation
2009 Stat, M., Pochon, X., Cowie, R. O. M., Gates, R. D. Specificity in communities of Symbiodinium in corals from Johnston Atoll 83-96 Marine Ecology-Progress Series  ISI:000268552500007 Journal Article
2009 Stier, A. C., Steele, M. A., Brooks, A. J. Coral reef fishes use crown-of-thorns seastar as habitat 227-227 Coral Reefs  ISI:000263071800029 Journal Article
2009 Van Oppen, M. J. H., Leong, J. A., Gates, R. D. Coral-virus interactions: A double-edged sword? 1-8 Symbiosis  ISI:000264431200001 Journal Article
2008 Edmunds, P. J., Gates, R. D. Acclimatization in tropical reef corals 307-310 Marine Ecology-Progress Series  ISI:000257413800028 Journal Article
2008 Edmunds, P. J. Differential effects of high temperature on the respiration of juvenile caribbean corals 453-464 Bulletin of Marine Science  ISI:000260894200002 Journal Article
2008 Edmunds, P. J. The effects of temperature on the growth of juvenile scleractinian corals 153-162 Marine Biology  ISI:000254260800013 Journal Article
2008 Green, D. H., Edmunds, P. J., Carpenter, R. C. Increasing relative abundance of Porites astreoides on Caribbean reefs mediated by an overall decline in coral cover 1-10 Marine Ecology-Progress Series  ISI:000256338000001 Journal Article
2008 Hench, J. L., Leichter, J. J., Monismith, S. G. Episodic circulation and exchange in a wave-driven coral reef and lagoon system 2681-2694 Limnology and Oceanography  ISI:000261355500029 Journal Article
2008 Holbrook, S. J., Brooks, A. J., Schmitt, R. J., Stewart, H. L. Effects of sheltering fish on growth of their host corals 521-530 Marine Biology  ISI:000259276300006 Journal Article
2008 Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Resistance and resilience of a coral reef fish community to changes in coral cover 263-271 Marine Ecology-Progress Series  ISI:000261797800025 Journal Article
2008 Lenihan, H. S., Adjeroud, M., Kotchen, M. J., Hench, J. L., Nakamura, T. Reef structure regulates small-scale spatial variation in coral bleaching 127-141 Marine Ecology-Progress Series  ISI:000261229600011 Journal Article
2008 Lison de Loma, T., Osenberg, C. W., Shima, J. S., Chancerelle, Y., Davies, N., Brooks, A. J., Galzin, R. A framework for assessing impacts of marine protected areas in Moorea (French Polynesia) 431-441 Pacific Science ISI:000256127600015 Journal Article
2008 Manning, M. M., Gates, R. D. Diversity in populations of free-living Symbiodinium from a Caribbean and Pacific reef 1853-1861 Limnology and Oceanography  ISI:000259356000013 Journal Article
2008 Morrow, K., Carpenter, R. Shallow kelp canopies mediate macroalgal composition: effects on the distribution and abundance of Corynactis californica (Corallimorpharia) 119-127 Marine Ecology-Progress Series Journal Article
2008 Morrow, K. M., Carpenter, R. C. Macroalgal morphology mediates particle capture by the corallimorpharian Corynactis californica 273-280 Marine Biology  ISI:000258576500003 Journal Article
2008 Muehllehner, N. Northridge, CA Growth and morphology in Acropora under increasing carbon dioxide and the effect of increased temperature and carbon dioxide on the photosynthesis and growth of Porites rus and Pocillopora meandrina California State University Biology  Thesis or Dissertation
2008 Price, N. N. Santa Barbara Structuring processes for benthic communities: Habitat selection, facilitation, and competition on a coral reef University of California 117 Ecology, Evolution and Marine Biology  Thesis or Dissertation
2008 Putnam, H. M., Edmunds, P. J. Northridge, CA The effects of temperature fluctuations on coral physiology. California State University Biology  Thesis or Dissertation
2008 Putnam, H. M., Edmunds, P. J., Fan, T.- Y. Effect of temperature on the settlement choice and photophysiology of larvae from the reef coral Stylophora pistillata 135-142 Biological Bulletin  ISI:000260049800003 Journal Article
2008 Rosman, J. H., Hench, J. L., Koseff, J. R., Monismith, S. G. Extracting Reynolds stresses from acoustic Doppler current profiler measurements in wave-dominated environments 286-306 Journal of Atmospheric and Oceanic Technology  ISI:000253582700010 Journal Article
2008 Skoog, A., Alldredge, A., Passow, U., Dunne, J., Murray, J. Neutral aldoses as source indicators for marine snow 195-206 Marine Chemistry  ISI:000253332400006 Journal Article
2008 Stat, M., Gates, R. D. Vectored introductions of marine endosymbiotic dinoflagellates into Hawaii 579-583 Biological Invasions  ISI:000254086900018 Journal Article
2008 Stat, M., Morris, E., Gates, R. D. Functional diversity in coral-dinoflagellate symbiosis 9256-9261 Proceedings of the National Academy of Sciences of the United States of America  ISI:000257645400024 Journal Article
2007 Apprill, A. M., Gates, R. D. Recognizing diversity in coral symbiotic dinoflagellate communities 1127-1134 Molecular Ecology  ISI:000244602500002 Journal Article
2007 Apprill, A. M., Bidigare, R. R., Gates, R. D. Visibly healthy corals exhibit variable pigment concentrations and symbiont phenotypes 387-397 Coral Reefs  ISI:000247307100022 Journal Article
2007 Brooks, A. J., Holbrook, S. J., Schmitt, R. J. Patterns of microhabitat use by fishes in the patch-forming coral Porites rus 245-254 Raffles Bulletin of Zoology (Supplement) Journal Article
2007 Buenau, K. E., Rassweiler, A., Nisbet, R. M. The effects of landscape structure on space competition and alternative stable states 3022-3031 Ecology  ISI:000251965200008 Journal Article
2007 Carpenter, R. C., Williams, S. L. Mass transfer limitation of photosynthesis of coral reef algal turfs 435-450 Marine Biology  ISI:000245125400004 Journal Article
2007 Edmunds, P. J. Evidence for a decadal-scale decline in the growth rates of juvenile scleractinian corals 1-13 Marine Ecology-Progress Series  ISI:000248392300001 Journal Article
2007 Elahi, R., Edmunds, P. J. Determinate growth and the scaling of photosynthetic energy intake in the solitary coral Fungia concinna (Verrill) 183-193 Journal of Experimental Marine Biology and Ecology  ISI:000249264600016 Journal Article
2007 Haring, R. N., Carpenter, R. C. Habitat-induced morphological variation influences photosynthesis and drag on the marine macroalga Pachydictyon coriaceum 243-255 Marine Biology  ISI:000244485800022 Journal Article
2007 Hoegh-Guldberg, O., Muller-Parker, G., Cook, C. B., Gates, R. D., Gladfelter, E., Trench, R. K., Weis, V. M. Len Muscatine (1932-2007) and his contributions to the understanding of algal-invertebrate endosymbiosis 731-739 Coral Reefs  ISI:000251579300001 Journal Article
2007 Holbrook, S. J., Schmitt, R. J., Brooks, A. J., Margalith, T., Burnsed, J., Seydel, K., Masui, H. Tokyo The use of LED light lures to enhance larval settlement of coral reef fish Technical Information Institute Co. Ltd. 326-338 State of the Art: High Power LED Application Practices Book Chapter
2007 Leggat, W., Ainsworth, T., Bythell, J., Dove, S., Gates, R., Hoegh-Guldberg, O., Iglesias-Prieto, R., Yellowlees, D. The hologenome theory disregards the coral holobiont Nature Reviews Microbiology  ISI:000249525500028 Journal Article
2007 Leichter, J. J., Denny, M. W., Gaines, S. D. Berkeley, CA Internal waves University of California 637-639 Encyclopedia of Tidepools and Rocky Shores Book Chapter
2007 Lesser, M. P., Bythell, J. C., Gates, R. D., Johnstone, R. W., Hoegh-Guldberg, O. Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data 36-44 Journal of Experimental Marine Biology and Ecology  ISI:000247155600005 Journal Article
2007 Maheigan, M. E. Northridge, CA Spatial scale of morphological variation of the corals Pocillopora verrucosa and Porites porites. California State University Biology  Thesis or Dissertation
2007 Mayfield, A. B., Gates, R. D. Osmoregulation in anthozoan-dinoflagellate symbiosis 1-10 Comparative Biochemistry and Physiology a-Molecular & Integrative Physiology  ISI:000245995700001 Journal Article
2007 Ohlmann, C., White, P., Washburn, L., Terrill, E., Emery, B., Otero, M. Interpretation of coastal HF radar-derived surface currents with high-resolution drifter data 666-680 Journal of Atmospheric and Oceanic Technology  ISI:000245742900010 Journal Article
2007 Padilla-Gamiño, J. L., Carpenter, R. C. Thermal ecophysiology of Laurencia pacifica and Laurencia nidifica (Ceramiales, Rhodophyta) from tropical and warm-temperate regions 686-692 Journal of Phycology  ISI:000248544800007 Journal Article
2007 Padilla-Gamiño, J. L.., Carpenter, R. C. Seasonal acclimatization of Asparagopsis taxiformis (Rhodophyta) from different biogeographic regions 833-842 Limnology and Oceanography  ISI:000245145200031 Journal Article
2007 Penin, L., Adjeroud, M., Schrimm, M., Lenihan, H. S. High spatial variability in coral bleaching around Moorea (French Polynesia): patterns across locations and water depths 171-181 Comptes Rendus Biologies  ISI:000244924400009 Journal Article
2007 Schmitt, R. J., Holbrook, S. J. The scale and cause of spatial heterogeneity in strength of temporal density dependence 1241-1249 Ecology  ISI:000246369900019 Journal Article
2007 Schmitt, R. J., Holbrook, S. J. Predicting the magnitude of temporal variation in young-of-year class strength of surfperch (Teleostei : Embiotocidae) 161-166 Raffles Bulletin of Zoology (Supplement) ISI:000244303400020 Journal Article
2007 Stewart, H. L., Payri, C. E., Koehl, M. A. R. The role of buoyancy in mitigating reduced light in macroalgal aggregations 11-20 Journal of Experimental Marine Biology and Ecology  ISI:000245262200002 Journal Article
2007 Talmage, S. C. Northridge, CA Variation in abundance and carbon allocation for Sargassum mangarevense across gradients in herbivory and hydrodynamic exposure in Moorea, French Polynesia. California State University Biology  Thesis or Dissertation
2007 Washburn, L. Berkeley, CA Coastal Currents University of California 168-172 Encyclopedia of Tidepools and Rocky Shores Book Chapter
2006 Brooks, A. J. Australian Institute for Marine Sciences, Townsville, Australia Digital Moorea: The implementation of a wireless sensor network for the monitoring of coral reefs.  11-16 Workshop on the Adoption of Sensor Networks by Coastal Managers  Conference Proceeding
2006 Bruno, J. F., Lee, S. C., Kertesz, J. S., Carpenter, R. C., Long, Z. T., Duffy, J. E. Partitioning the effects of algal species identity and richness on benthic marine primary production 170-178 Oikos  ISI:000240998300017 Journal Article
2006 Carpenter, R., Edmunds, P. Local and regional scale recovery of Diadema promotes recruitment of scleractinian corals 271-280 Ecology Letters Journal Article
2006 Holbrook, S. J., Brooks, A. J., Schmitt, R. J. Okinawa, Japan Relationships between live coral cover and reef fishes: implications for predicting effects of environmental disturbances 241-249 Proceedings of the 10th International Coral Reef Symposium  Conference Proceeding
2006 Kane, C. Santa Barbara Habitat preference, social behavior and patterns of abundance in the coral reef fish Paracirrhites arcatus. University of California 52 Ecology, Evolution and Marine Biology  Thesis or Dissertation
2006 Ridgway, T., Gates, R. D. Why are there so few genetic markers available for coral population analyses? 1-7 Symbiosis  ISI:000237345200001 Journal Article
2006 Schmitt, R. J., Holbrook, S. J. Okinawa, Japan Developmental delays, recruitment storage and adult attrition rates in local populations of a tropical damselfish 232-240 Proceedings of the 10th International Coral Reef Symposium  Conference Proceeding
2006 Stewart, H. L., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Symbiotic crabs maintain coral health by clearing sediments 609-615 Coral Reefs  ISI:000242058400017 Journal Article
2006 Stewart, H. L. Morphological variation and phenotypic plasticity of buoyancy in the macroalga Turbinaria ornata across a barrier reef 721-730 Marine Biology  ISI:000238683900003 Journal Article
2006 Stewart, H. L. Hydrodynamic consequences of flexural stiffness and buoyancy for seaweeds: a study using physical models 2170-2181 Journal of Experimental Biology  ISI:000237643700025 Journal Article
2006 Stewart, H. L. Ontogenetic changes in buoyancy, breaking strength, extensibility, and reproductive investment in a drifting macroalga Turbinaria ornata (Phaeophyta) 43-50 Journal of Phycology  ISI:000235220500005 Journal Article
2006 Thompson, A. R., Nisbet, R. M., Schmitt, R. J. Dynamics of mutualist populations that are demographically open 1239-1251 Journal of Animal Ecology  ISI:000241158600002 Journal Article
2006 Van Oppen, M. J. H., Gates, R. D. Conservation genetics and the resilience of reef-building corals 3863-3883 Molecular Ecology  ISI:000241388800001 Journal Article
2005 Elahi, R., Edmunds, P. J. Northridge, CA Effects of age and size on the growth and physiology of scleractinian corals California State University 96 Biology  Thesis or Dissertation
2005 Holbrook, S. J., Schmitt, R. J. Growth, reproduction and survival of a tropical sea anemone (Actiniaria): benefits of hosting anemonefish 67-73 Coral Reefs ISI:000227742400010 Journal Article
2005 Lape, J. C. P. Factors influencing the quality of a refuge for coral reef fish: effects of microhabitat setting, size and inhabitants. Ecology Evolution and Marine Biology  Thesis or Dissertation
2005 Maritorena, S., Siegel, D. A. Consistent merging of satellite ocean color data sets using a bio-optical model 429-440 Remote Sensing of Environment  ISI:000227046700001 Journal Article
2005 Siegel, D. A., Maritorena, S., Nelson, N. B., Behrenfeld, M. J. Independence and interdependencies among global ocean color properties: Reassessing the bio-optical assumption Journal of Geophysical Research-Oceans  ISI:000230918600001 Journal Article
2005 Siegel, D. A., Maritorena, S., Nelson, N. B., Behrenfeld, M. J., McClain, C. R. Colored dissolved organic matter and its influence on the satellite-based characterization of the ocean biosphere Geophysical Research Letters  ISI:000233105000007 Journal Article
2005 Thompson, A. R. Dynamics of demographically open mutualists: immigration, intraspecific competition, and predation impact goby populations 61-69 Oecologia  ISI:000227369700006 Journal Article