Publications

Year Citations Publication Type
In Press Comeau, S., Carpenter, R. C., Edmunds, P. J. Effects of pCO2 on photosynthesis and respiration of tropical scleractinian corals and calcified algae ICES Journal of Marine Science Journal Article
In Press Comeau, S., Tambutte, E., Carpenter, R. C. , Edmunds, P. J., Evensen, N. R., Allemand, D., Ferrier-Pages, C. , Tambutte, S., A., Venn. A. Coral pH regulation of the calcifying fluid is modulated by seawater dissolved inorganic carbon concentration Journal Article
In Press Davis, K., Carlson, P. A., Bradley, D., Warner, R. R., Caselle, J. E. Predation risk influences feeding rates but competition structures space use for a common Pacific parrotfish Oecologia Journal Article
In Press Gil, M. A., Hein, A. M. Social interactions among grazing reef fish drive material flux in a coral reef ecosystem. Proceedings of the National Academy of Sciences Journal Article
In Press Rivest, E. B., Chen, C. -S., Fan, T. -Y., Li, H. -H., Hofmann, G. E. Lipid consumption in coral larvae differs among sites: a consideration of environmental history in a global ocean change scenario. Journal Article
In Press Sogin, E. M., Putnam, H. M., Nelson, C. E., Anderson, P., Gates, R. D. Correspondence of coral holobiont metabolome with symbiotic bacteria, archaea and Symbiodinium communities. Environmental Microbiology Reports Journal Article
2017 Casella, E., Collin, A., Harris, D., Ferse, S. C. A., Bejarano, S., Parravicini, V., Hench, J. L., Rovere, A. Mapping coral reefs using consumer-grade drones and structure from motion photogrammetry techniques Coral Reefs 269-275 Journal Article
2017 Edmunds, P. J. , Burgess, S. C. Size-dependent physiological responses of the branching coral Pocillopora verrucosa to elevated temperature and pCO2 Journal of Experimental Biology 3896-3906 Journal Article
2017 Edmunds, P. J, Yarid, A. The effects of ocean acidification on wound repair in the coral Porites spp Journal of Experimental Marine Biology and Ecology 98-104 Journal Article
2017 Evensen, N. R., Edmunds, P. J. Conspecific aggregations mitigate the effects of ocean acidification on calcification of the coral Pocillopora verrucosa Journal of Experimental Biology 1097-1105 Journal Article
2017 Lenz, E.A. , P.J. Edmunds Branches and plates of the morphologically plastic coral Porites rus are insensitive to ocean acidification and warming Journal of Experimental Marine Biology and Ecology 188-194 Journal Article
2017 Vellend M., Dorneals M., Baeten L., Beauséjour R., Brown C.D., De Frenne P., Elmendorf S.C., Gotelli N.J., Moyes F. , Myers-Smith I.H. , Magurran A.E., McGill B.J., Shimadzu H., Sievers C. Estimates of local biodiversity change over time stand up to scrutiny Ecology 583-590 Journal Article
2016 Ainsworth, T. D., Gates, R. D. Corals' microbial sentinels Science 1518-1519 Journal Article
2016 Beldade, R, S.J. Holbrook, R.J. Schmitt, S. Planes , G. Bernardi Spatial patterns of self-recruitment of a coral reef fish in relation to island-scale retention mechanisms Molecular Ecology  5203-5211 Journal Article
2016 Bramanti, L., Edmunds, P. J. Density-associated recruitment mediates coral population dynamics on a coral reef. Coral Reefs Journal Article
2016 Brown, D. J., Edmunds, P. J. Differences in the responses of three scleractinians and the hydrocoral Millepora platyphylla to ocean acidification Marine Biology Journal Article
2016 Cinner, J. E., Huchery, C., MacNeil, M. A., Graham, N. A. J., McClanahan, T. R., Maina, J., Maire, E, Kittinger, J., Hicks, C. C., Mora, C., Allison, E., D’Agata, S., Hoey, A., Feary, D., Crowder, L., Williams, I., Kulbicki, M., Vigliola, L., Wantiez, L., Edgar, G., Stuart-Smith, R., Sandin, S. A., Green, A., Hardt, M., Beger, M., Friedlander, A., Campbell, S. J., Holmes, K. E., Wilson, S. K., Brokovich, E., Brooks, A. J., Cruz-Motta, J. J., Booth, D. J., Chabanet, P., Gough, C., Tupper, M., Ferse, S. C. A., Rashid Sumaila, U., Mouillot, D. Bright spots among the world’s coral reefs Nature 416-419 Journal Article
2016 Clausing, R. J., Fong, P. Environmental variability drives rapid and dramatic changes in nutrient limitation of tropical macroalgae with different ecological strategies. Coral Reefs Journal Article
2016 Comeau, S., Carpenter, R. C., Lantz, C. A., Edmunds, P. J. Parameterization of the response of calcification to temperature and pCO2 in the coral Acropora pulchra and the alga Lithophyllum kotschyanum. Coral Reefs 929-939 Journal Article
2016 Davies, N., Field, D., Gavaghan, D., Holbrook, S. J., Planes, S., Troyer, M., Bonsall, M., Claudet, J., Roderick, G., Schmitt, R. J., Zettler, L. A., Berteaux, V., Bossin, H., Cabasse, C., Collin, A., Deck, J., Dell, T., Dunne, J., Gates, R. D., Harfoot, M., Hench, J. L., Hopuare, M., Kirch, P., Kotoulas, G., Kosenko, A., Leichter, J. J., Lenihan, H. S., Magoulas, A., Martinez, N., Meyer, C. P., Stoll, B., Swalla, B., Tartakovsky, D. M., Murphy, H. T., Turyshev, S., Valdvinos, F., Williams, R., Wood, S. Simulating social-ecological systems: the Island Digital Ecosytem Avatars (IDEA) consortium. Gigascience 1-4 Journal Article
2016 Davis, S. L. Mechanisms underlying macroalgal phase shifts in coral reef ecosystems Thesis or Dissertation
2016 Didden, C., Edmunds, P. J. Experiential ecological investigations as a vehicle coupling teaching & research in high schools & universities American Biology Teacher 278-284 Journal Article
2016 Edmunds, P. J., Comeau, S., Lantz, C. A., Andersson, A., Briggs, C., Cohen, A., Gattuso, J.P., Grady, J. M., Gross, K., Johnson, M., Muller, E. B., Ries, J. B., Tambutté, S., Tambutté, E., Venn, A., Carpenter, R. C. Integrating the effects of ocean acidification across functional scales on tropical coral reefs. BioScience 350-362 Journal Article
2016 Edmunds, P. J., Leichter, J. J. Spatial scale-dependent vertical zonation of coral reef community structure in French Polynesia. Ecosphere e01342 Journal Article
2016 Edmunds, P. J., Leichter, J. J., Johnston, E. C., Tong, E. J., Toonen, R. J. Ecological and genetic variation in reef-building corals on four Society Islands. Limnology and Oceanography Journal Article
2016 Evensen, N. R., Edmunds, P. J. Interactive effects of ocean acidification and neighboring corals on the growth of Pocillopora verrucosa Marine Biology 148 Journal Article
2016 Guo, T., Capra, A., Troyer, M., Gruen, A, Brooks, A. J., Hench, J. L., Schmitt, R. J., Holbrook, S. J., Dubbini, M. Accuracy assessment of underwater photogrammetric three dimensional modelling for coral reefs Remote Sensing and Spatial Information Sciences XIII International Society for Photogrammetry and Remote Sensing Congress, Prague, Czech Republic Conference Proceeding
2016 Han, X., Adam, T. C., Schmitt, R. J., Brooks, A. J., Holbrook, S. J. Response of herbivore functional groups to sequential perturbations in Moorea, French Polynesia. Coral Reefs 99-1009 Journal Article
2016 Hanson K.M., Schnarr E.L., Leichter J.J Non-random feeding enhances the contribution of oceanic zooplankton to the diet of the planktivorous coral reef fish Dascyllus flavicaudus Marine Biology Journal Article
2016 Ho, M. Effects of ocean acidification and temperature on the physiology and ecology of two fleshy macroalgae that differ in their carbon acquisition strategy. Thesis or Dissertation
2016 Holbrook, S. J., Walker, L. R., Willig , M. R. Oxford, England, U.K. Kelp forests, coral reefs and the LTER Program: Synergies and impacts on a scientific career. Oxford University Press Long-Term Environmental Research: Changing the Nature of Scientists. 27 Book Chapter
2016 Holbrook, S.J., R.J. Schmitt, T.C. Adam, A.J. Brooks Coral reef resilience, tipping points and the strength of herbivory Scientific Reports 35817 Journal Article
2016 Jacobson L.M., Edmunds P.J., Muller E.B., Nisbet R.M. The implications of reduced metabolic rate in resource-limited corals Journal Of Experimental Biology 870-877 Journal Article
2016 Knee, K. L., Crook, E. D., Hench, J. L., Leichter, J. J., Paytan, A. Assessment of submarine groundwater discharge (SGD) as a source of dissolved radium and nutrients to Moorea (French Polynesia) coastal waters Estuaries and Coasts Journal Article
2016 Leenhardt P., Lauer M., Moussa R.M., Holbrook S.J., Rassweiler A., Schmitt R.J., Claudet J. Complexities and uncertainties in transitioning small-scale coral reef fisheries Frontiers in Marine Science Journal Article
2016 Madin, J.S., Anderson K.D., Andreasen M.H., Bridges T.C.L., Cairns S.D., Connolly S.R., Darling E.S. , Diaz M., Falster D.S., Franklin E.C., Gates E.D., Hoogenboom M.O., Huang D., Keith S.A., Kosnik M.A., Kuo C.-Y., Lough J.M., Lovelock C.E., Luiz O., Matinelli J., Mizerek T. , Pandolfi J.M., Pochon X., Pratchett M.S., Putnam H.M., Roberts T.E., Stat M., Wallace C.C., Widman E., Baird A.H. The Coral Traits Database, a curated database of trait information for coral species from the global oceans Scientific Data Journal Article
2016 Mor, C. Light and temperature control physiological responses of Halimeda to ocean acidification Thesis or Dissertation
2016 Mor, C. Light and temperature control physiological responses of Halimeda to ocean acidification Thesis or Dissertation
2016 Nelson, H. R. From trees to octocorals: the role of phenotypic integration, shading, and self-thinning in underwater animal forests Thesis or Dissertation
2016 Putnam H.M., Davidson J., Gates R.D. Ocean acidification influences DNA methylation and phenotypic plasticity in environmentally susceptible corals Integrative and Comparative Biology Journal Article
2016 Putnam H.M. , Davidson J., R.D. Gates Ocean acidification influences DNA methylation and phenotypic plasticity in environmentally susceptible corals Evolutionary Applications 1165-1178 Journal Article
2016 Rivest, E. B., O'Brian, M., Kapsenberg, L., Gotschalk, C. C., Blanchette, C. A., Hoshijima, U., Hofmann, G. E. Beyond the benchtop and the benthos: dataset management planning and design for time series of ocean carbonate chemistry associated with Durafet-based pH sensors Ecological Informatics 209-220 Journal Article
2016 Schmitt, R. J. The LTER construct for understanding dynamics of coral reef ecosystems and its influence on my science. Long-Term Environmental Research: Changing the Nature of Scientists. Book Chapter
2016 Shantz A.A., Lemoine N.P., Burkepile D.E. Nutrient loading alters the performance of key nutrient exchange mutualisms Ecology Letters 20-28 Journal Article
2016 Shaw, E.C, R.C. Carpenter, C.A. Lantz , P.J. Edmunds Intraspecific variability in the response to ocean warming and acidification in the scleractinian coral Acropora pulchra Marine Biology Journal Article
2016 Sogin E.M., Putnam H.M., Anderson P.E., Gates R.D. Metabolomic signatures of increases in temperature and ocean acidification from the reef-building coral, Pocillopora damicornis Metabolomics Journal Article
2016 Sternberg D.R., Nelson H.R., Edmunds P.J. Asexual budding and aggregated spatial distribution of fungiid corals from disturbed reefs in Moorea, French Polynesia Integrative and Comparative Biology Journal Article
2016 Swanson, S. A. Echinoid herbivores and coral reef resilience Thesis or Dissertation
2016 Tootell J.S., Steele M.A. Distribution, behavior, and condition of herbivorous fishes on coral reefs track algal resources Oecologia 13-24 Journal Article
2016 Tsounis, G. , P.J. Edmunds The potential for self-seeding by the coral Pocillopora spp. In Moorea, French Polynesia PeerJ Journal Article
2015 Andersson, A. J., Kline, D. I., Edmunds, P. J., Archer, S. D., Bednarsek, N., Carpenter, R. C., Chadsey, M., Goldstein, P., Grottoli, A. G., Hurst, T. P., King, A. L., Kubler, J. E., Kuffner, I. B., Mackey, K. R. M. , Menge, B. A., Paytan, A., Riebesell, U. , Schnetzer, A., Warner M. E. , Zimmerman, R. C. Understanding ocean acidification on organismal to ecological scales. Oceanography 16-27 Journal Article
2015 Beijbom, O., Edmunds, P. J., Roelfsema, C., Smith, J., Kline, D. I., Neal, B. P., Dunlap, M. J., Moriarty, V., Fan, T. - Y., Tan, C. -J., Chan, S., Treibitz, T., Gamst, A., Mitchell, B. G., Kriegman, D. Towards automated annotation of benthic survey images: Variability of human experts and operational modes of automation. PLoS One e0130312 Journal Article
2015 Bramanti, L., Iannelli, M., Fan, T. - Y., Edmunds, P. J. Using demographic models to project the effects of climate change on scleractinian corals: Pocillopora damicornis as a case study Coral Reefs 505-515 Journal Article
2015 Brewin, R. J. W., Sathyendranath, S., Muller, D., Brockmann, C., Deschamps, P. Y., Devred, E., Doerffer, R., Fomferra, N., Franz, B., Grant, M., Groom, S., Horseman, A., Hu, C., Krasemann, H., Lee, Z., Maritorena, S., Meelin, F., Peters, M., Platt, T., Regner, P., Smyth, T., Steinmetz, F., Swinton, J., Werdell, J., White III, G. N. The ocean colour climate change initiative: III. A round-robin comparison on in-water bio-optical algorithms Remote Sensing of Environment 271-294 Journal Article
2015 Briggs, A. A. Northridge, CA The effects of ocean acidification, temperature, and light on the physiology and ecology of tropical crustose coralline algae. California State University, Northridge Biology Thesis or Dissertation
2015 Brown, A., Carpenter, R. C. Water flow influences the mechanisms and outcomes of interactions between massive Porites and coral reef algae. Marine Biology 459-468 Journal Article
2015 Carlson, C. A., Giovannoni, S.J. Introduction to the Annual Review Annual review of marine science Book Chapter
2015 Carlson, C. A., Giovannoni, S.J. Annual review of marine science 596 Book
2015 Carlson, C. A., Hansell, D. A. DOM sources, sinks, reactivity and budgets. Biochemistry of marine dissolved organic matter, 2nd edition 65-126 Book Chapter
2015 Comeau, S., Carpenter, R. C., Lantz, C. A., Edmunds, P. J. Ocean acidification accelerates dissolution of experimental coral reef communities. Biogeosciences 365-372 Journal Article
2015 Edmunds, P. J., Steneck, R., Albright, R., Carpenter, R. C., Chui, A. P. Y., Fan, T. -Y., Harii, S., Kitano, H., Kurihara, H., Legendre, L., Mitarai, S., Muko, S., Nozawa, Y., Padillo-Gamino, J., Price, N. N., Sakai, K., Suzuki, G., van Oppen, M. J. H., Yarid, A., Gates, R. D. Geographic variation in long-term trajectories of change in coral recruitment: a global-to-local perspective. Journal of Marine and Freshwater Research 609-622 Journal Article
2015 Ellis, A. The impacts of temperature and other environmental factors on the early life stages of a scleractinian coral Thesis or Dissertation
2015 Evensen, N. R., Edmunds, Dr. Peter J. The effects of ocean acidification on species interactions among scleractinian corals. Biology Thesis or Dissertation
2015 Evensen, N. R., Edmunds, P. J., Sakai, K. Effects of pCO2 on spatial competition between the corals Montipora aequituberculata and Porites lutea. Marine Ecology Progress Series 123-134 Journal Article
2015 Forsman, Z., Wellington, G. M., Fox, G. E., Toonen, R. J. Clues to unraveling the coral species problem: distinguishing species from geographic variation in Porites across the Pacific with molecular markers and microskeletal traits. PeerJ e751 Journal Article
2015 Gibbin, E. M., Putnam, H. M., Gates, R. D., Nitschke, M. R., Davy, S. K. Species-specific differences in thermal tolerance may define susceptibility to intracellular acidosis in reef corals. Marine Biology 717-723 Journal Article
2015 Hansell, D. A., Carlson, C. A. London, England, U.K. Biogeochemistry of marine dissolved organic matter. Academic Press LTD-Elsevier Science LTD 693 Book
2015 Herdman, L. M. M., Hench, J. L., Monismith, S. G. Heat balances and thermally-driven lagoon-ocean exchanges on a tropical coral reef system (Moorea, French Polynesia). Journal of Geophysical Research: Oceans 1233-1252 Journal Article
2015 Hillard, H. The role of Sargassum pacificum in ocean acidification effects on corals. Biology . Thesis or Dissertation
2015 Holbrook, S. J., Schmitt, R. J., Messmer, V., Brooks, A. J., Srinivasan, M., Munday, P. L., Jones, G. P. Reef fishes in biodiversity hotspots are at greatest risk from loss of coral species. PLoS One e0124054 Journal Article
2015 Kearney, M. R., Domingos, T., Nisbet, R. M. Dynamic energy budget theory: An efficient and general theory for ecology. Biological Bulletin 341-341 Journal Article
2015 Lenihan, H. S., Hench, J. L., Holbrook, S. J., Schmitt, R. J., Potoski, M. Hydrodynamics influence coral performance through simultaneous direct and indirect effects. Ecology 1540-1549 Journal Article
2015 Pratchett, M. S., Anderson, K. D., Hoogenboom, M. O., Widman, E., Baird, A. H., Pandolfi, J. M., Edmunds, P. J., Lough, J. M. Spatial, temporal and taxonomic variation in coral growth-implications for the structure and function of coral reef ecosystems. Oceanography and marine biology: An Annual Review 215-295 Book Chapter
2015 Putnam, H. M., Gates, R. D. Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions. Journal of Experimental Biology 2365-2372 Journal Article
2015 Rivest, E. B., Gouthier T. C. Complex environmental forcing across the biogeographical range of coral populations. PLoS One e0121742 Journal Article
2015 Rivest, E. B., Hofmann, G. E. Effects of temperature and pCO2 on lipid use and biological parameters of planulae of Pocillopora damicornis. Journal of Experimental Marine Biology and Ecology 43-52 Journal Article
2015 Roth, M. S., Padilla-Gamino, J. L., Pochon, X., Bidigare, R. R., Gates, R. D., Smith, C. M., Spalding, H. L. Fluorescent proteins in dominant mesophotic reef-building corals. Marine Ecology Progress Series 63-79 Journal Article
2015 Sogin, E. M. Development and application of metabolomics for reef-building corals. Zoology 133 Thesis or Dissertation
2015 Treibitz, T., Neal, B. P., Kline, D. I., Beijbom, O., Roberts, P. L. D., Mitchell, B. G., Kriegman, D. Wide Field-of-View Fluorescence Imaging of Coral Reefs Scientific Reports 7694 Journal Article
2015 van Oppen, M. J. H., Oliver, J. K., Putnam, H. M., Gates, R. D. Building coral reef resilience through assisted evolution. Proceedings of the National Academy of Sciences 2307-2313 Journal Article
2014 Adam, T. C., Brooks, A. J., Holbrook, S. J., Schmitt, R. J., Washburn, L., Bernardi, G. How will coral reef fish communities respond to climate-driven disturbances? Insight from landscape-scale perturbations. Oecologia 285-296 Journal Article
2014 Antoine, D., Babin , M., Berthon, J. F., Bricaud, A., Gentili, B., Loisel, H., Maritorena, S., Stramski, D. Shedding light on the sea: André Morel’s legacy to optical oceanography. Annual Review of Marine Science 1-21 Journal Article
2014 Beijbom, O., Saberian, M., Kriegman, D., Vasconcelos, N. Beijing, China Guess Averse Loss functions for cost-sensitive multiclass boosting. Journal of Machine Learning Research 31st International Conference on Machine Learning (ICML) 2014 9 Conference Proceeding
2014 Bowen, B. W., Shanker, K., Yasuda, N., Malay, M. C. D., von der Heyden, S., Paulay, G., Rocha, L. A., Selkoe, K. A., Barber, P H., Williams, S. T., Lessios, H. A., Crandall, E. D., Bernardi, G., Meyer, C. P., Carpenter, K. E., Toonen, R. J. Phylogeography unplugged: Comparative surveys in the genomic era. Bulletin of Marine Science 13-46 Journal Article
2014 Byrne, M., Hofmann, G. E. Calcification in a changing ocean: Perspectives on a virtual symposium in the Biological Bulletin. Biological Bulletin 167-168 Journal Article
2014 Cameron, C. M., Edmunds, P. J. Effects simulated fish predation on small colonies of massive Porites spp. and Pocillopora meandrina. Marine Ecology Progress Series 139-148 Journal Article
2014 Clausing, R. J., Annunziata, C., Baker, G., Lee, C., Bittick, S. J., Fong, P. Effects of sediment depth on algal turf height are mediated by interactions with fish herbivory on a fringing reef. Marine Ecology Progress Series 121-129 Journal Article
2014 Comeau, S., Edmunds, P. J., Spindel, N. B., Carpenter, R. C. Diel pCO2 oscillations modulate the response of the coral Acropora hyacinthus to ocean acidification. Marine Ecology Progress Series 99-111 Journal Article
2014 Comeau, S., Carpenter, R. C., Edmunds, P. J. Effects of irradiance on the response of the coral Acropora pulchra and the calcifying alga Hydrolithon reinboldii to temperature elevation and ocean acidification Journal of Experimental Marine Biology and Ecology 28-35 Journal Article
2014 Comeau, S., Carpenter, R. C., Nojiri, Y., Putnam, H. M., Sakai, K., Edmunds, P. J. Pacific-wide contrast highlights resistance of reef calcifiers to ocean acidification. Proceedings of the Royal Society B – Biological Sciences 20141339 Journal Article
2014 Comeau, S., Edmunds, P. J., Spindel, N. B., Carpenter, R. C. Fast coral reef calcifiers are more sensitive to ocean acidification in short-term laboratory incubations Limnology and Oceanography 1081-1091 Journal Article
2014 Comeau, S., Edmunds, P. J., Lantz, C. A., Carpenter, R. C. Water flow modulates the response of coral reef communities to ocean acidification. Scientific Reports 6681 Journal Article
2014 Dornelas, M., Gotelli, N. J., McGill, B., Shimadzu, H., Moyes, F., Sievers, C., Magurran, A. E. Assemblage time series revel biodiversity change but not systematic loss. Science 296-299 Journal Article
2014 Edmunds, P. J., Wall, C. B. Evidence that high pCO2 affects protein metabolism in tropical reef corals Marine Biology 68-77 Journal Article
2014 Edmunds, P. J. Is acclimation beneficial to scleractinian corals, Porites spp.? Marine Biology 1531-1542 Journal Article
2014 Edmunds, P. J., Pochon, X., Levitan, D. R., Yost, D. M., Belcaid, M., Putnam, H. M., Gates, R. D. Long-term changes in Symbiodinium communities in Orbicella annularis in St. John, US Virgin Islands Marine Ecology Progress Series 129-144 Journal Article
2014 Edmunds, P. J., Gray, S. C. The effects of storms, heavy rain, and sedimentation on the shallow coral reefs of St. John, US Virgin Islands Hydrobiologia 143-158 Journal Article
2014 Edmunds, P. J., Burgess, S. C., Putnam, H. M., Baskett, M. L., Bramanti, L., Fabina, N. S., Han, X., Lesser, M. P., Madin, J. S., Wall, C. B., Yost, D. M., Gates, R. D. Evaluating the causal basis of ecological success within the scleractinia: an integral projection model approach Marine Biology 2719-2734 Journal Article
2014 Edmunds, P. J., Nozawa, Y., Villanueva, R. D. Refuges modulate coral recruitment in the Caribbean and the Pacific. Journal of Experimental Marine Biology and Ecology 78-84 Journal Article
2014 Edmunds, P. J. Large numbers of Acropora palmata grow in shallow water in St. John, US Virgin Islands. Bulletin of Marine Science 999-1000 Journal Article
2014 Edmunds, P. J., Adjeroud, M. , Baskett, M. L., Baums, I. B., Budd, A. F., Carpenter, R. C., Fabina, N. S., Fan, T. - Y., Franklin, E. C., Gross, E. C., Han, X., Jacobson, L. M., Klaus, J. S., McClanahan, T. R., O’Leary, J. K., van Oppen, M. J. H., Pochon, X., Putnam, H. M., Smith, T. B., Stat, M. I., Sweatman, H., van Woesik, R., Gates, R. D. Persistence and change in community composition of reef corals through past, present, and future climates PLoS One e107525 Journal Article
2014 Edmunds, P. J. Landscape-scale variation in coral reef community structure in the United States Virgin Islands. Marine Ecology Progress Series 137-152 Journal Article
2014 Gibbin, E. M., Putnam, H. M., Davy, S. K., Gates, R. D. Intracellular pH and its response to CO2-driven seawater acidification in symbiotic versus non-symbiotic coral cells. Journal of Experimental Biology 1963-1969 Journal Article
2014 Gowan, J. C., Tootell, J. S., Carpenter, R. C. Northridge, CA The effects of water flow and sedimentation on interactions between massive Porites and algal turf. California State University Coral Reefs 651-663 Thesis or Dissertation
2014 Hillard, H., Carpenter, R. C. Acidification and algae: do they have interactive effects on corals? Society of Integrative and Comparative Biology Annual Meeting 2014 E91-E91 Conference Proceeding
2014 Johnson, M., Moriarty, V., Carpenter, R. C. Acclimatization of the crustose coraline alga Porolithon onkodes to variable pCO2. PLoS One e87678 Journal Article
2014 Kelly, L. W., Williams, G. J., Barott, K. L., Carlson, C. A., Dinsdale, E. A., Edwards, R. A., Haas, A. F., Haynes, M., Lim, Y. W., McDole, T., Nelson, C. E., Sala, E., Sandin, S. A., Smith, J. E., Vermeij, M. J. A., Youle, M., Rohwer, F. Local genomic adaption of coral and algal-associated microbiomes to gradients of natural variability and anthropogenic stressors. Proceedings of the National Academy of Sciences 10227-10232 Journal Article
2014 Keyse, J., Crandall, E. D., Toonen, R. J., Meyer, C. P., Treml, E. A., Riginos, C. The scope of published population genetic data for Indo-Pacific marine fauna and future research opportunities in the region. Bulletin of Marine Science 47-78 Journal Article
2014 Leichter, J. J., Stokes, M. D., Vilchis, L. I., Fiechter, J. Regional synchrony of tempertaure variation and internal wave forcing along the Florida Keys reef tract. Journal of Geophysical Research: Oceans 548-558 Journal Article
2014 Lenz, E. A. Northridge, CA An ecological and physiological assessment of tropical coral reefs to past and predicted disturbances. California State University Biology Thesis or Dissertation
2014 Lenz, E. A., Brown, D. B., Didden, C., Arnold, A., Edmunds, P. J. The distribution of hermit crabs and their gastropod shells on shallow reefs off St. John, US Virgin Islands Bulletin of Marine Science 681-692 Journal Article
2014 Levitan, D. R., Edmunds, P. J., Levitan, K. E. What makes a species common? No evidence of density-dependent recruitment or mortality of the sea urchin Diadema antillarum after the 1983-1984 mass mortality. Oecologia 117-128 Journal Article
2014 Marti-Puig, P., Forsman, Z. H., Haverkort-Yeh, R. D., Knapp, I. S. S., Maragos, J. E., Toonen, R. J. Extreme phenotypic polymorphism in the coral genus Pocillopora; micro-morphology corresponds to mitochondrial groups, while colony morphology does not Bulletin of Marine Science 211-231 Journal Article
2014 Muller, E.B., Nisbet, R. M. Dynamic energy budget modeling reveals the potential of future growth and calcification for the coccolithophore Emiliania huxleyi in an acifified ocean. Global Change Biology 2031-2038 Journal Article
2014 Padilla-Gamino, J. L. Kupe and the corals - French/Tahitian edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series 32 Book
2014 Padilla-Gamino, J. L. Kupe and the corals - English/Spanish edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series 32 Book
2014 Padilla-Gamino, J. L., Hedouin, L., Waller, R. G., Smith, D., Truong, W., Gates, R. D. Sedimentation and the reproductive biology of the Hawaiian reef-building coral Montipora capitata Biological Bulletin 8-18 Journal Article
2014 Padilla-Gamino, J. L. Kupe and the corals - English electronic edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series 32 Book
2014 Padilla-Gamino, J. L. Kupe and the corals - English/Hawaiian edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series 32 Book
2014 Padilla-Gamino, J. L. Kupe and the corals - French/Paumoto electronic edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series 32 Book
2014 Padilla-Gamino, J. L. Kupe and the corals - English/Tahitian edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series 32 Book
2014 Padilla-Gamino, J. L. Kupe and the corals - English edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series 32 Book
2014 Pochon, X., Putnam, H. M., Gates, R. D. Multi-gene analysis of Symbiodinium dinoflagellates: a perspective on rarity, symbiosis, and evolution. PeerJ e394 Journal Article
2014 Pochon, X., Gates, R. D., Vik, D., Edmunds, P. J. Molecular characterization of symbiotic algae (Symbiodinium spp.) in soritid foraminifera (Sorites orbiculus) and a scleractinian coral (Orbicella annularis) from St John, US Virgin Islands Marine Biology 2307-2318 Journal Article
2014 Poray, A. K., Carpenter, R. C. Distributions of coral reef macroalgae in a back reef habitat in Moorea, French Polynesia Coral Reefs 67-76 Journal Article
2014 Rivest, E. B. Santa Barbara The effects of elevated ocean acidity and temperature on the physiological integrity of the larvae of the cauliflower coral, Pocillopora damicornis. University of California Ecology, Evolution and Marine Biology 313 Thesis or Dissertation
2014 Rivest, E. B., Hofmann, G. E. Responses of the metabolism of the larvae of Pocillopora damicornis to ocean acidification and warming. PLoS One e96172 Journal Article
2014 Sogin, E. M., Anderson, P., Williams, P., Chen, C. -S., Gates, R. D. Application of 1H-NMR metabolomic profiling for reef-building corals. PLoS One e111274 Journal Article
2014 Stier, A. C., Hanson, K. M., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Predation and landscape characteristics independently affect reef fish community organization. Ecology 1294-1307 Journal Article
2014 Tootell, J. S., Steele, M. A. Vermetid gastropods reduce foraging by herbivorous fishes on algae on coral reefs. Coral Reefs 1145-1151 Journal Article
2014 Valentino, L. M. The effects of ocean acidification on bioerosion in the back reef of Moorea, French Polynesia. Biology
2014 von der Heyden, S., Beger, M., Toonen, R. J., van Herwerden, L., Juinio-Menez, M. A., Ravago-Gotanco, R., Fauvelot, C., Bernardi, G. The application of genetics to marine management and conservation: examples from the Indo-Pacific Bulletin of Marine Science 123-158 Journal Article
2014 Wall, C. B., Fan, T. - Y., Edmunds, P. J. Ocean acidification has no effect on thermal bleaching in the coral Seriatopora caliendrum. Coral Reefs 119-130 Journal Article
2014 Yau, A. J., Lenihan, H. S., Kendall, B. E. Fisheries management priorities vary with self-recruitment in sedentary marine populations. Ecological Applications 1490-1504 Journal Article
2014 Zamudio, S. L., Edmunds, P. J. Northridge, CA Impacts of temperature-induced maternal effects on larval phenotype, settlement, and post-settlement growth of brooding scleractinian corals. California State University Biology Thesis or Dissertation
2013 Alldredge, A.L., Carlson, C. A., Carpenter, R.C. Sources of organic carbon to coral reef flats. Oceanography 108-113 Journal Article
2013 Alldredge, A.L., Holbrook, S. J., Schmitt, R. J., Brooks, A. J., Stewart, H. L. Skeletal growth of four scleractinian corals is not enhanced by in situ mesozooplankton enrichment. Marine Ecology-Progress Series 143-153 Journal Article
2013 Bramanti, L., Edmunds, P. J. San Francisco, CA Demographic models can forcast climate change effects on scleractinian corals: the Pocillopora damicornis case study. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 2013 E22-E22 Conference Proceeding
2013 Brown, D. J. Northridge, CA Effects of ocean acidification on the primary framework builders of coral reefs. California State University Biology 89 Thesis or Dissertation
2013 Brown, A. L., Carpenter, R. C. Water-flow mediated oxygen dynamics within massive Porites-algal turf interactions. Marine Ecology Progress Series 1-10 Journal Article
2013 Brown, D. B., Edmunds, P. J. Long-term changes in the population dynamics of the Caribbean hydrocoral Millepora spp. Journal of Experimental Marine Biology and Ecology 62-70 Journal Article
2013 Carr, M. H., Malone, D. P., Hixon, M. A., Holbrook, S. J., Schmitt, R. J. How SCUBA changed our understanding of nature: underwater breakthroughs in reef fish ecology. Smithsonian Contributions to the Marine Sciences 157-167 Journal Article
2013 Comeau, S., Carpenter, R. C., Edmunds, P. J. Response to: Coral reef calcification: carbonate, bicarbonate and proton flux under conditions of increasing ocean acidification. Proceedings of the Royal Society B – Biological Sciences 20131153 Journal Article
2013 Comeau, S., Edmunds, P. J., Spindel, N. B., Carpenter, R. C. The responses of eight coral reef calcifiers to increasing partial pressure of CO2 do not exhibit a tipping point. Limnology and Oceanography 388-398 Journal Article
2013 Comeau, S., Carpenter, R. C., Edmunds, P. J. Coral reef calcifiers buffer their response to ocean acidification using both bicarbonate and carbonate. Proceedings of the Royal Society B – Biological Sciences 20122374 Journal Article
2013 Comeau, S., Carpenter, R. C., Edmunds, P. J. Effects of feeding and light intensity on the response of the coral Porites rus to ocean acidification. Marine Biology 1127-1134 Journal Article
2013 Cumbo, V. R., Fan, T. -Y., Edmunds, P. J. Effects of exposure duration on the response of Pocillopora damicornis larvae to elevated temperature and high pCO2. Journal of Experimental Marine Biology and Ecology 100-107 Journal Article
2013 Cumbo, V. R., Edmunds, P. J., Wall, C. B., Fan, T. - Y. Brooded coral larvae differ in their response to high temperature and elevated pCO2 depending on the day of release. Marine Biology 2903-2917 Journal Article
2013 Dufault, A. M., Ninokawa, A., Bramanti, L., Cumbo, V. R., Fan, T. -Y., Edmunds, P. J. The role of light in mediating the effects of ocean acidification on coral calcification. Journal of Experimental Biology 1570-1577 Journal Article
2013 Edmunds, P. J., Fan, T. - Y. San Francisco, CA Evidence that high pCO2 affects coral recruits through perturbed protein metabolism. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 2013 E60-E60 Conference Proceeding
2013 Edmunds, P. J., Carpenter, R. C., Comeau, S. Understanding the threats of ocean acidification to coral reefs. Oceanography 149-152 Journal Article
2013 Edmunds, P. J. Decadal-scale changes in the community structure of coral reefs in St. John, U.S. Virgin Islands. Marine Ecology-Progress Series 107-123 Journal Article
2013 Edmunds, P. J. , Cumbo, V. R., Fan, T. - Y. Metabolic costs of larval settlement and metamorphosis in the coral Seriatopora caliendrum under ambient and elevated pCO2. Journal of Experimental Marine Biology and Ecology 33-38 Journal Article
2013 Fabina, N. S., Putnam, H. M., Franklin, E. C., Stat, M., Gates, R. D. Symbiotic specificity, association patterns, and function determine community responses to global changes: Defining critical research areas for coral-Symbiodinium symbioses. Global Change Biology 3306-3316 Journal Article
2013 Farrar, C. E., , Forsman, Z. H., Gates, R. D., Leong, J. A. C., Toonen, R. J. Observing the coral symbiome using laser scanning confocal microscopy. Science Journal Article
2013 Forsman, Z., Johnston, E. C., Brooks, A. J., Adam, T. C., Toonen, R. J. Genetic evidence for regional isolation of Pocillopora corals from Moorea. Oceanography 153-155 Journal Article
2013 Haas, A. F., Nelson, C. E., Rohwer, F., Wegley-Kelly, L., Quistad, S. D., Carlson, C. A., Leichter, J. J., Hatay, M., Smith, J. E. Influence of coral and algal exudates on microbially mediated reef metabolism. PeerJ e108 Journal Article
2013 Han, X. Santa Barbara Herbivore community dynamics and functional compositions in Moorea, French Polynesia. University of California Ecology, Evolution and Marine Biology 130 Thesis or Dissertation
2013 Hédouin, L., Gates, R. D. Assessing fertilization success of the coral Montipora capitata under copper exposure: does the night of spawning matter? Marine Pollution Bulletin 221-224 Journal Article
2013 Hench, J. L., Rosman, J. H. Observations of spatial flow patterns at the coral colony scale on a shallow reef flat. Journal of Geophysical Research: Oceans 1142-1156 Journal Article
2013 Hofmann, G. E., Blanchette, C. A., Rivest, E. B., Kapsenberg, L. Taking the pulse of marine ecosystems: The importance of coupling long-term physical and biological observations in the context of global change biology. Oceanography 140-148 Journal Article
2013 Leichter, J. J., Alldredge, A. L., Bernardi, G., Brooks, A. J., Carlson, C. A., Carpenter, R. C., Edmunds, P. J., Fewings, M. R., Hanson, K. M., Hench, J. L., Holbrook, S. J., Nelson, C. E., Schmitt, R. J., Toonen, R. J., Washburn, L., Wyatt, A. S. J. Biological and physical interactions on a tropical island coral reef: Transport and retention processes on Moorea, French Polynesia. Oceanography 52-63 Journal Article
2013 Lenz, E. A., Edmunds, P. J. San Francisco, CA Evidence that octocorals are increasing in population density in the Caribbean. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 2013 E317-E317 Conference Proceeding
2013 Lesser, M. P., Stat, M., Gates, R. D. The endosymbiotic dinoflagellates (Symbiodinium sp.) of corals are parasites and mutualists. Coral Reefs 603-611 Journal Article
2013 Mayfield, A. B., Fan, T. - Y., Chen, C. -S. Physiological acclimation to elevated temperature in a reef-building coral from an upwelling environment. Coral Reefs 909-921 Journal Article
2013 Monismith, S. G., Herdman, L. M. M., Ahmerkamp, S. H., Hench, J. L. Wave transformation and wave-driven flow across a steep coral reef. Journal of Physical Oceanography 1356-1379 Journal Article
2013 Nelson, C. E., Goldberg, S. J., Wegley Kelly, L., Haas, A. F., Smith, J. E., Rohwer, F., Carlson, C. A. Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages. ISME Journal 962-979 Journal Article
2013 Nielsen, J. A. Santa Barbara Effects of density on behaviorally-mediated tradeoffs between growth and survivorship. University of California Ecology, Evolution and Marine Biology 59 Thesis or Dissertation
2013 Padilla-Gamino, J. L., Bidigare, R. R., Barshis, D. J., Alamaru, A., Hedouin, L., Hernandez-Pech, X., Kandel, F., Soon, S L., Roth, M. S., Rodrigues, L. J., Grottoli, A. G., Portocarrero, C., Wagenhauser, S. A., Buttler, F., Gates, R. D. Are all eggs created equal? A case study from the Hawaiian reef-building coral Montipora capitata. Coral Reefs 137-152 Journal Article
2013 Page, H. M., Brooks, A. J., Kulbicki, M., Galzin, R., Miller, R. J., Reed, D., Schmitt, R. J., Holbrook, S. J., Koenigs, C. Stable isotopes reveal trophic relationships and diet of consumers in temperate kelp forest and coral reef ecosystems. Oceanography 180-189 Journal Article
2013 Putnam, H. M., Mayfield, A. B., Fan, T. - Y., Chen, C.-S., Gates, R. D. The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperatures and pCO2. Marine Biology 2157-2173 Journal Article
2013 Rivest, E. B., Chen, C. -S., Fan, T. -Y. , Li, H. -H., Edmunds, P. J., Hofmann, G. E. San Francisco, CA Energetic consequences of ocean acidification and warming for coral larvae. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 2013 E360-E360 Conference Proceeding
2013 Siegel, D. A., Behrenfeld, M. J., Maritorena, S., McClain, C. R., Antoine, D., Bailey, S. W., Bontempi, P. S., Boss, E. S., Dierssen, H. M., Doney, S. C., Eplee Jr., R. E., Evans, R. H., Feldman, G. C., Fields, E., Franz, B. A., Kuring, N. A., Mengelt, C., Nelson, N. B., Patt, F. S., Robinson, W. D., Sarmiento, J. L., Swan, C. M., Werdell, P. J., Westberry, T. K., Wilding, J. G., Yoder, J. A. Regional to global assessments of phytoplankton dynamics from the SeaWiFS mission. Remote Sensing of Environment 77-91 Journal Article
2013 Smith, J. E., Price, N. N., Nelson, C. E., Haas, A. F. Coupled changes in oxygen concentration and pH caused by metabolism of benthic coral reef organisms. Marine Biology 2437-2447 Journal Article
2013 Stat, M., Pochon, X., Franklin, E. C. , Bruno, J. F., Casey, K. S., Selig, E. R., Gates, R. D. The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress. Ecology and Evolution 1317-1329 Journal Article
2013 Stewart, H. L., Price, N. N., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Determinants of the onset and strength of mutualistic interactions between branching corals and associate crabs. Marine Ecology Progress Series 155-163 Journal Article
2013 Stier, A. C., Geange, S. W., Hanson, K. M., Bolker, B. M. Predator density and timing of arrival affect reef fish community assembly. Ecology 1057-1068 Journal Article
2013 Thompson, A. R., Adam, T. C., Hultgren, K. M., Thacker, C. E. Ecology and evolution affect network structure in an intimate marine mutualism. The American Naturalist E58-E72 Journal Article
2013 Tootell, J. Northridge, CA Processes affecting the grazing, distribution, behavior, and condition of herbivorous fishes on coral reefs. California State University Biology Thesis or Dissertation
2013 Treibitz, T., Neal, B. P., Kline, D. I., Beijbom, O., Roberts, P. L. D., Mitchell, B. G., Kriegman, D. San Diego, CA Wide field-of-view daytime fluorescence imaging of coral reefs. IEEE, 345 E 47TH ST, NEW YORK, NY 10017 USA Oceans '13 2013 1-5 Conference Proceeding
2013 Wall, C. B., Edmunds, P. J. In situ effects of low pH and elevated HCO3- on juvenile massive Porites spp. in Moorea, French Polynesia Biological Bulletin 92-101 Journal Article
2013 Wall, C. B., Edmunds, P. J. San Francisco, CA Elevated pCO2 increases ammonium excretion in juvenile colonies of the scleractinian Seritopora caliendrum. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 2013 E389-E389 Conference Proceeding
2013 Werdell, P.J., , Franz, B. A., Bailey, S. W., Feldman, G. C., Boss, E., Brando, V. E., Dowell, M., Hirata, T., Lavender, S. J., Lee, Z., Loisel, H. , Maritorena, S., Mélin, F., Moore, T. S., Smyth, T. J., Antoine, D., Devred, E., d’Andon, O. H. F., Mangin, A. Generalized ocean color inversion model for retrieving marine inherent optical properties. Applied Optics 2019-2037 Journal Article
2013 Zamudio, S. L., Bramanti, L., Edmunds, P.J. San Francisco, CA Temperature-induced maternal effects on the phenotype of larvae released by the brooding coral Pocillopora damicornis. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 2013 E233-E233 Conference Proceeding
2012 Adam, T. C., Horii, S. S. Patterns of resource-use and competition for mutualistic partners between two species of obligate cleaner fish. Coral Reefs 1149-1154 Journal Article
2012 Adam, T. C. Mutualistic cleaner fish initiate trait-mediated indirect interactions on coral reefs by influencing the behavior of coral predators. Journal of Animal Ecology 692-700 Journal Article
2012 Beijbom, O., Edmunds, P.J., Kline, D. I., Mitchell, B. G., Kriegman, D. Providence, R.I. Automated annotation of coral reef survey images. IEEE Conferences IEEE Conference on Computer Vision and Pattern Recognition (CVPR) 2012 8 Conference Proceeding
2012 Beldade, R., Holbrook, S. J., Schmitt, R. J., Planes, S., Malone, D., Bernardi, G. Larger female fish contribute disproportionately more to self-replenishment. Proceedings of the Royal Society B – Biological Sciences 2116-2121 Journal Article
2012 Bergsma, G. S. Epibiotic mutualists alter coral susceptibility and response to biotic disturbance through cascading trait-mediated indirect interactions. Coral Reefs 461-469 Journal Article
2012 Bergsma, G. S. Coral mutualists enhance fish abundance and diversity through a morphology-mediated facilitation cascade. Marine Ecology-Progress Series 151-161 Journal Article
2012 Bernardi, G., Beldade, R., Holbrook, S. J., Schmitt, R. J. Full-sibs in cohorts of newly settled coral reef fishes. PLoS One e44953 Journal Article
2012 Brown, A. Northridge, CA The influence of water flow on mechanisms underlying coral-algal interactions. California State University Biology Thesis or Dissertation
2012 Buenau, K. E., Price, N. N., Nisbet, R. M. Size dependence, facilitation, and microhabitats mediate space competition between coral and crustose coralline algae in a spatially explicit model. Ecological Modelling 23-33 Journal Article
2012 Collin, A., Hench, J. L., Planes, S. Cairns, Australia A novel spaceborne proxy for mapping coral cover. James Cook University Proceedings of the 12th International Coral Reef Symposium. 2012 5 Conference Proceeding
2012 Collin, A., Hench, J. L. Towards deeper measurements of tropical reefscape structure using the WorldView-2 spaceborne sensor. Remote Sensing 1425-1447 Journal Article
2012 Colvard, N. B., Edmunds, P. J. Macroalgae on shallow tropical reefs reduce the availability of reflected light for use in coral photosynthesis.  Bulletin of Marine Science 1019-1033 Journal Article
2012 Cumbo, V. R., Fan, T. - Y., Edmunds, P. J. Physiological development of brooded larvae from two pocilloporid corals in Taiwan. Marine Biology 2853-2866 Journal Article
2012 Cumbo, V. R., Edmunds, P. J., Fan, T. -Y. Scleractinian corals capture zooplankton within days of settlement and metamorphosis. Coral Reefs 1155 Journal Article
2012 Dufault, A. M. The effects of ocean acidification on the physiology of coral recruits. Biology Thesis or Dissertation
2012 Dufault, A. M., Cumbo, V. R., Fan, T. - Y., Edmunds, P. J. Effects of diurnally oscillating pCO2 on the calcification and survival of coral recruits. Proceedings of the Royal Society B – Biological Sciences 2951-2958 Journal Article
2012 Edmunds, P.J. Effect of pCO2 on the growth, respiration, and photophysiology of massive Porites spp. in Moorea, French Polynesia. Marine Biology 2149-2160 Journal Article
2012 Edmunds, P. J., Putnam, H. M., Gates, R. D. Photophysiological consequences of vertical stratification of Symbiodinium in tissue of the coral Porites lutea Biological Bulletin 226-235 Journal Article
2012 Edmunds, P.J., Brown, D. B., Moriarty, V. Interactive effects of ocean acidification and temperature on two scleractinian corals from Moorea, French Polynesia. Global Change Biology 2173-2183 Journal Article
2012 Fabina, N. S., Putnam, H. M., Franklin, E. C., Stat, M., Gates, R. D. Transmission mode predicts specificity and interaction patterns in coral-Symbiodinium networks. PLoS One e44970 Journal Article
2012 Franklin, E. C., Stat, M., Pochon, X., Putnam, H. M., Gates, R. D. GeoSymbio: A hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses. Molecular Ecology Resources 369-373 Journal Article
2012 Gowan, J. C., Tootell, J. S. The effects of water flow and sedimentation on interactions between massive Porites and algal turf. Biology Journal Article
2012 Jaroensutasinee, K., Jaroensutasinee, M., Bainbridge, S., Fountain, T., Holbrook, S. J., Nekrasov, M. Cairns, Australia CREON-Integrating disparate sources of remote coral reef sensor data. James Cook University Proceedings of the 12th International Coral Reef Symposium. 2012 5 Conference Proceeding
2012 Johnson, M. D., Carpenter, R. C. Ocean acidification and warming decrease calcification in the crustose coralline alga Hydrolithon onkodes and increases susceptibility to grazing. Journal of Experimental Marine Biology and Ecology 94-101 Journal Article
2012 Krueger, T., Gates, R.D. Cultivating endosymbionts-host environmental mimics support the survival of Symbiodinium C15 ex hospite. Journal of Experimental Marine Biology and Ecology 169-176 Journal Article
2012 Leichter, J. J., Stokes, M. D., Hench, J. L., Witting, J. , Washburn, L. The island-scale internal wave climate of Moorea, French Polynesia. Journal of Geophysical Research: Oceans C06008 Journal Article
2012 Mayfield, A. B., Chan, P. -H., Putnam, H. M., Chen, C.-S., Fan, T. -Y. The effects of a variable temperature regime on the physiology of the reef-building coral Seriatopora hystrix: results from a laboratory-based reciprocal transplant. Journal of Experimental Biology 4183-4195 Journal Article
2012 McCliment, E., Nelson, C., Carlson, C., Alldredge, A., Witting, J., Amaral-Zettler, L. An all-taxon microbial inventory of the Moorea coral reef ecosystem. ISME Journal 309-319 Journal Article
2012 Padilla-Gamiño, J. L., Pochon, X., Bird, C., Concepcion, G. T., Gates, R. D. From parent to gamete: vertical transmission of Symbiodinium (Dinophyceae) ITS2 sequence assemblages in the reef building coral Montipora capitata. PLoS One e38440 Journal Article
2012 Padilla-Gamino, J. L., Hanson, K. M., Stat, M., Gates, R. D. Phenotypic plasticity of the coral Porites rus: acclimatization responses to a turbid environment. Journal of Experimental Marine Biology and Ecology 71-80 Journal Article
2012 Pochon, X., Putnam, H. M., Burki, F., Gates, R. D. Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium. PLoS One e29816 Journal Article
2012 Putnam, H. M. Manoa Resilience and acclimatization potential of reef corals under predicted climate change stressors. University of Hawai'i, Manoa Zoology 144 Thesis or Dissertation
2012 Putnam, H. M., Stat, M., Pochon, X., Gates, R. D. Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals. Proceedings of the Royal Society B – Biological Sciences 4352-4361 Journal Article
2012 Siegel, D.A., , Antoine, D. , Behrenfeld, M. J., d’Andon, O. H. F., Fields, E., Franz, B. A., Goryl, P., Maritorena, S., McClain, C. R., Wang, M., Yoder, J. A. Global ocean phytoplankton. Bulletin of the American Meteorological Society State of the climate in 2011. S107-S110 Book Chapter
2012 Stat, M., Baker, A. C., Bourne, D. G., Correa, A. M. S., Forsman, Z., Huggett, M. J., Pochon, X., Skillings, D., Toonen, R. J., van Oppen, M. J. H., Gates, R. D. Amsterdam, Netherlands Molecular delineation of species in the coral holobiont. Academic Press Advances in Marine Biology 1-65 Book Chapter
2012 Wall, C. B. Northridge, CA The effects of ocean acidification and temperature on the physiology of juvenile scleractinian corals. California State University Biology 152 Thesis or Dissertation
2012 Yau, A. J.-Y., Fan, T.- Y. Size-dependent photosynthetic performance in the giant clam Tridacna maxima, a mixotrophic marine bivalve. Marine Biology 65-75 Journal Article
2011 Adam, T.C., Schmitt, R. J., Holbrook, S. J., Brooks, A. J., Edmunds, P.J., Carpenter, R.C., Bernardi, G. Herbivory, connectivity and ecosystem resilience: response of a coral reef to a large-scale perturbation PLoS One e23717 Journal Article
2011 Adam, T. C. High quality habitat and facilitation ameliorate competitive effects of prior residents on new settlers. Oecologia 121-130 Journal Article
2011 Ananthasubramaniam, B., Nisbet, R. M., Morse, D., Doyle, F. J. Integrate-and-fire models of insolation-driven entrainment of broadcast spawning in corals. Theoretical Ecology 69-85 Journal Article
2011 Antoine, D., Siegel, D. A., Kostadinov, T., Maritorena, S., Nelson, N. B., Gentili, B., Vellucci, V., Guillocheau, N Variability in optical particle backscattering in contrasting bio-optical oceanic regimes. Limnology and Oceanography 955-973 Journal Article
2011 Bergsma, G. S., Martinez, C. M. Mutualist-induced morphological changes enhance growth and survival of corals. Marine Biology 2267-2277 Journal Article
2011 Bestelmeyer, B. T., Ellison, A. M., Fraser, W. R., Gorman, K. B., Holbrook, S. J., Laney, C. M., Ohman, M. O., Peters, D. P. C., Pillsbury, F. C., Rassweiler, A., Schmitt, R. J., Sharma, S. Analysis of abrupt transitions in ecological systems. Ecosphere 129 Journal Article
2011 Buenau, K. E., Price, N. N., Nisbet, R. M. Local interactions drive size dependent space competition between coral and crustose coralline algae. Oikos 941-949 Journal Article
2011 Cameron, C. Northridge, CA The effects of partial mortality on corals in St. John, U.S. Virgin Islands and Moorea, French Polynesia. California State University Biology Thesis or Dissertation
2011 Colvard, N., Edmunds, P. J. Decadal-scale changes in abundance of non-scleractinian invertebrates on a Caribbean coral reef. Journal of Experimental Marine Biology and Ecology 153-160 Journal Article
2011 Edmunds, P. J., Ross, C. L. M., Didden, C. High, but localized recruitment of Montastraea annularis complex in St. John, United States Virgin Islands. Coral Reefs 123-130 Journal Article
2011 Edmunds, P. J. Zooplanktivory ameliorates the effects of ocean acidification on the reef coral Porites spp. Limnology and Oceanography 2402-2410 Journal Article
2011 Edmunds, P. J., Putnam, H. M., Nisbet, R. M., Muller, E.B. Benchmarks in organism performance and their use in comparative analyses. Oecologia 379-390 Journal Article
2011 Edmunds, P.J., Cumbo, V, Fan, T.-Y. Effects of temperature on the respiration of brooded larvae from tropical reef corals. Journal of Experimental Biology WOS:000293167300023 2783-2790 Journal Article
2011 Eynaud, Y., Nisbet, R. M., Muller, E.B. Impact of excess and harmful radiation on energy budgets in sceractinian corals. Ecological Modelling 1315-1322 Journal Article
2011 Franklin, E. C., Stat, M., Pochon, X., Putnam, H. M., Gates, R. D. Santa Barbara Rapid development of a hybrid web application for synthesis science of Symbiodinium with Google Apps. University of California Environmental Information Management Conference 2011 44-48 Conference Proceeding
2011 Gates, R. D., Ainsworth, T. D. The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals. Journal of Experimental Marine Biology and Ecology 94-101 Journal Article
2011 Goldenheim, W. M., Edmunds, P. Effects of flow and temperature on growth and photophysiology of scleractinian corals in Moorea, French Polynesia Biological Bulletin 270-279 Journal Article
2011 Green, D. H., Edmunds, P. J. Spatio-temporal variability of coral recruitment on shallow reefs in St John, US Virgin Islands. Journal of Experimental Marine Biology and Ecology 220-229 Journal Article
2011 Haas, A. F., Nelson, C. E., Wegley-Kelly, L., Carlson, C. A., Rohwer, F., Leichter, J. J., Wyatt, A., Smith, J. E. Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity. PLoS One e27973 Journal Article
2011 Hanson, K. San Diego, CA Planktivorous fish link coral reef and oceanic food webs: causes and consequences of landscape-level patterns in fish behavior, diet and growth. University of California Scripps Institution of Oceanography Thesis or Dissertation
2011 Hofmann, G. E., Smith, J. E., Johnson, K. S., Send, U, Levin, L.A., Micheli, F., Paytan, A., Price, N. N., Peterson, B., Takeshita, Y., Matson, P. G., Crook, E. D., Kroeker, K. J., Gambi, M. C., Rivest, E. B., Frieder, C. A., Yu, P. C., Martz, T.R. High-frequency dynamics of ocean pH: a multi-ecosystem comparison. PLoS One e28983 Journal Article
2011 Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Indirect effects of species interactions on habitat provisioning. Oecologia WOS:000291606100017 739-749 Journal Article
2011 Jacobson, L. M. Northridge, CA Coral energetics: the metaboloic response to resource scarcity and subsequent cost of recovery. California State University Biology 81 Thesis or Dissertation
2011 Jaroensutasinee, M., Jaroensutasinee, K., Fountain, T., Nekrasov, M., Chumkiew, S., Noonsang, P. , Kuhapong, U., Bainbridge, S. Santa Barbara Coral sensor network at Racha Island, Thailand. University of California Environmental Information Management Conference 2011 82-86 Conference Proceeding
2011 Johnson, M. E. K., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Fish communities on staghorn coral: effects of habitat characteristics and resident farmerfishes. Environmental Biology of Fishes WOS:000293297300006 429-448 Journal Article
2011 Johnson, M. Northridge, CA The effects of ocean acidification, elevated temperature and herbivory on tropical crustose coralline algae. California State University Biology Thesis or Dissertation
2011 Kayal, M., Lenihan, H. S., Pau, C., Penin, L., Adjeroud, M. Associational refuges among corals mediate impacts of a crown-of-thorns starfish Acanthaster planci outbreak. Coral Reefs WOS:000293536600035 827-837 Journal Article
2011 Lenihan, H. S., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Influence of corallivory, competition, and habitat structure on coral community shifts. Ecology 1959-1971 Journal Article
2011 Mayfield, A. B., Wang, L.H.., Tang, P.-C., Fan, T.- Y., Hsiao, Y.-Y., Tsai, C.-L., Chen, C.-S. Assessing the impacts of experimentally elevated temperature on the biological composition and molecular chaperone gene expression of a reef coral. PLoS One e26529 Journal Article
2011 Melack, J. M., Finzi, A. C., Siegal, D., MacIntyre, S., Nelson, C. E., Aufdenkampe, A. K., Pace, M. L. Improving biogeochemical knowledge through technical innovation. Frontiers in Ecology and the Environment 37-43 Journal Article
2011 Messmer, V., Jones, G. P., Munday, P. L., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Habitat biodiversity as a determinant of fish community structure on coral reefs. Ecology 2285-2298 Journal Article
2011 Mora, C., Aburto-Oropeza, O., Bocas, A. A., Ayotte, P. M., Banks, S., Bauman, A. G., Berger, M., Bessudo, S., Booth, D. J., Brokovich, E., Brooks, A. J., Chabanet, P., Cinner, J., Cortes, J., Cruz-Motta, J. J., Magana, A. C., DeMartini, E., Edgar, G. J., Feary, D. A., Ferse, S. C. A., Friedlander, A., Gaston, K. J., Gough, C., Graham, N. A. J., Green, A., Guzman, H., Kulbicki, M., Letourneur, Y., Perez, A. L., Loreau, M., Loya, Y., Martinez, C., Mascarenas-Osorio, I., Morove, T., Nadon, M.-O., Nakamura, Y., Paredes, G., Polunin, N., Pratchett, M. S., Bonilla, H. R., Rivera, F., Sala, E., Sandin, S., Soler, G., Stuart-Smith, R., Tessier, E., Tittensor, D. P., Tupper, M., Usseglio, P., Vigliola, L., Wantiez, L., Williams, I., Wilson, S.K., Zapata, F. A. Global human footprint on the linkage between biodiversity and ecosystem functioning in reef fishes. PLoS Biology e1000606 Journal Article
2011 Muller, E.B. Synthesizing units as modeling tool for photosynthesizing organisms with photoinhibition and nutrient limitation. Ecological Modelling 637-644 Journal Article
2011 Nelson, C. E., Alldredge, A.L., McCliment, E. A., Amaral-Zettler, L. A., Carlson, C. A. Depleted dissolved organic carbon and distinct bacterial communities in the water column of a rapid-flushing coral reef ecosystem. ISME Journal 1374-1387 Journal Article
2011 Padilla-Gamiño, J. L., Weatherby, T. M., Waller, R. G., Gates, R. D. Formation and structural organization of the egg-sperm bundle of the scleractinian coral Montipora capitata. Coral Reefs 371-380 Journal Article
2011 Padilla-Gamiño, J. L. Manoa Spawning dynamics and parental effects in the Hawaiian scleractinian coral Montipora capitata. University of Hawai'i, Manoa Zoology Thesis or Dissertation
2011 Putnam, H. M., Edmunds, P. J. The physiological response of reef corals to diel fluctuations in seawater temperature. Journal of Experimental Marine Biology and Ecology 216-223 Journal Article
2011 Rosman, J.H., Hench, J.L. A framework for understanding drag parameterizations for coral reefs Journal of Geophysical Research Journal Article
2011 Salerno, J. L., Reineman, D. R., Gates, R. D., Rappé, M. S. The effect of a sublethal temperature elevation on the structure of bacterial communities associated with the coral Porites compressa. Journal of Marine Biology 969173 Journal Article
2011 Siegel, D. A., Behrenfeld, M. J., Maritorena, S., O’Malley, R. T. , Fields, E., Blunden, J., Arndt, D. S., Baringer, M. O. Global ocean phytoplankton. Bulletin of the American Meteorological Society State of the climate in 2010 2011 S105-S108 Book Chapter
2011 Stat, M., Bird, C. E., Pochon, X., Chasqui, L., Chauka, L. J., Concepcion, G. T., Logan, D., Takabayashi, M., Gates, R. D. Variation in Symbiodinium ITS2 sequence assemblages among coral colonies.  PLoS One e15854 Journal Article
2011 Stat, M., Gates, R. D. Clade D Symbiodinium in scleractinian corals: a “nugget” of hope, a selfish opportunist, an ominous sign, or all of the above?  Journal of Marine Biology 730715 Journal Article
2011 Swanson, S., Carpenter, R. C. Northridge, CA Species-specific effects of echinoids on coral reef benthic community structure in Moorea, French Polynesia. California State University Biology 87 Thesis or Dissertation
2011 Yau, A. J.-Y. Santa Barbara Size-Based Approaches to Modeling and Managing Local Populations: A Case Study Using an Artisanal Fishery for Giant Clams, Tridacna maxima. University of California Donald Bren School of Environmental Science and Management 138 Thesis or Dissertation
2010 Adam, T. C. Competition encourages cooperation: client fish receive higher quality service when cleaner fish compete Animal Behaviour 1183-1189 Journal Article
2010 Adam, T. C. Santa Barbara Cooperation in a cleaner fish mutualism and its ecological implications University of California Ecology, Evolution and Marine Biology Thesis or Dissertation
2010 Ainsworth, T. D., Thurber, R. V., Gates, R. D. The future of coral reefs - A microbial perspective Trends in Ecology and Evolution 233-240 Journal Article
2010 Barshis, D. J., Stillman, J. H., Gates, R. D., Toonen, R. J., Smith, L. W., Birkeland, C. Protein expression and genetic structure of the coral Porites lobata in an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity Molecular Ecology 1705-1720 Journal Article
2010 Baskett, M. L., Nisbet, R. M., Kappel, C. V., Mumby, P. J., Gaines, S. D. Conservation management approaches to protecting the capacity for corals to respond to climate change: a theoretical comparison Global Change Biology 1229-1246 Journal Article
2010 Brainard, R. E., Bainbridge, S., Brinkman, R., Eakin, C. M., Field, M., Gattuso, J. -P., Gledhill, D., Gramer, L., Green, A., Hendee, J., Hoeke, R. K., Holbrook, S. J., Hoegh-Guldberg, O., Lammers, M., Manzello, D., McManus, M., Moffitt, R., Monaco, M., Morgan, J., Obura, D., Planes, S., Schmitt, R. J., Steinberg, C., Sweatman, H., Vetter, O. J., Wilkinson, C., Wong, K. B. Venice, Italy An international network of coral reef ecosystem observing systems (I-CREOS) European Space Agency Special Publication Proceedings of OceanObs’09: Sustained Ocean Observations and Information for Society Book Chapter
2010 Colvard, N. Northridge, CA Description of the light microenvironment on tropical reefs and its influence on coral physiology. California State University Biology Thesis or Dissertation
2010 Colvard, N. B., Edmunds, P. J. Seattle, WA The physiological response of tropical reef corals to light reflected from the benthos. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 2010 e33 Conference Proceeding
2010 Edmunds, P. J., Leichter, J. J., Adjeroud, M. Landscape-scale variation in coral recruitment in Moorea, French Polynesia. Marine Ecology-Progress Series 75-89 Journal Article
2010 Edmunds, P. J. Population biology of Porites astreoides and Diploria strigosa on a shallow Caribbean reef. Marine Ecology-Progress Series 87-104 Journal Article
2010 Edmunds, P. J., Lenihan, H. S. Effect of sub-lethal damage to juvenile colonies of massive Porites spp. under contrasting regimes of temperature and water flow Marine Biology 887-897 Journal Article
2010 Green, D. H., Edmunds, P. J., Pochon, X., Gates, R. D. The effects of substratum type on the growth, mortality, and phytophysiology of juvenile corals in St. John, US Virgin Islands Journal of Experimental Marine Biology and Ecology 18-29 Journal Article
2010 Hench, J. L., Rosman, J. H. Analysis of bottom-track and compass error in a self-contained acoustic Doppler diver navigation console. Journal of Atmospheric and Oceanic Technology 1229-1238 Journal Article
2010 Hofmann, G. E., Barry, J. P., Edmunds, P. J., Gates, R. D., Hutchins, D. A., Klinger, T., Sewell, M. A. The effect of ocean acidification on calcifying organisms in marine ecosystems: an organism to ecosystem perspective. Annual Review of Ecology, Evolution and Systematics 127-147 Journal Article
2010 Hofmann, G. E., Todgham, A. E. Living in the now: Physiological mechanisms to tolerate a rapidly changing environment. Annual Review of Physiology 127-145 Journal Article
2010 Jacobson, L.M., Edmunds, P. J. Long-term changes in the concentration of zooplankton and particulate material over a fringing reef in St. John, US Virgin Islands. Bulletin of Marine Science 763-772 Journal Article
2010 Johnson, M. E. K. Santa Barbara Influence of staghorn coral on associated fish communities University of California Ecology, Evolution and Marine Biology 44 Thesis or Dissertation
2010 Kostadinov, T. S. , Siegel, D. A., Maritorena, S. Global variability of phytoplankton functional types from space assessment via the particle size distribution. Biogeosciences 3239-3257 Journal Article
2010 Lenihan, H. S., Edmunds, P. J. Response of Pocillopora verrucosa to corallivory varies with environmental conditions Marine Ecology-Progress Series 51-63 Journal Article
2010 Leray, M., Beldade, R., Holbrook, S. J., Schmitt, R. J., Planes, S., Bernardi, G. Allopatric divergence and speciation in coral reef fish: the three-spot dascyllus, Dascyllus trimaculatus, species complex. Evolution 1218-1230 Journal Article
2010 Lesser, M. P., Slattery, M., Stat, M., Ojimi, M., Gates, R. D., Grottoli, A. Photoacclimatization by the coral Montastraea cavernosa in the mesophotic zone: light, food, and genetics Ecology 990-1003 Journal Article
2010 Maritorena, S., d’Andon, O. H. F., Mangin, A., Siegel, D. A. Merged satellite ocean color data products using a bio-optical model: characteristics, benefits and issues. Remote Sensing of Environment 1791-1804 Journal Article
2010 Mayfield, A. B., Hsiao, Y.-Y., Fan, T.-Y., Chen, C.-S., Gates, R. D. Evaluating the temporal stability of stress-activated protein kinase and cytoskeleton gene expression in the Pacific reef corals Pocillopora damicornis and Seritopora hystrix. Journal of Experimental Marine Biology and Ecology 215-222 Journal Article
2010 Palmer, C. V., Gates, R. D. Skeletal Eroding Band in Hawaiian corals Coral Reefs 469-469 Journal Article
2010 Pochon, X. P., Gates, R.D. A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i Molecular Phylogenetics and Evolution 492-497 Journal Article
2010 Pochon, X., Stat, M., Takabayashi, M., Chasqui, L., Chauka, L. J., Logan, D. D. K., Gates, R. D. Comparison of endosymbiotic and free-living Symbiodinium (Dinophyceae) diversity in a Hawaiian reef environment Journal of Phycology 53-65 Journal Article
2010 Price, N. N. Habitat selection, facilitation, and biotic settlement cues affect distribution and performance of coral recruits in French Polynesia Oecologia 747-758 Journal Article
2010 Putnam, H. M., Edmunds, P. J., Fan, T.-Y. Effect of a fluctuating thermal regime on adult and larval reef corals Invertebrate Biology 199-209 Journal Article
2010 Thacker, C. E., Thompson, A. R., Adam, T. C., Chen, J. Phylogeny and character evolution in the Indo-Pacific genus Ctenogobiops (Gobiiformes:Gobiidae) Icthyological Research 231-239 Journal Article
2010 Weersing, K., Padilla-Gamino, J. L., Bruno, B. What microbe are you? The Science Teacher 40-44 Journal Article
2010 Wilson, S. K., Adjeroud, M., Bellwood, D. R., Berumen, M. L., Booth, D., Bozec, Y.-M., Chabanet, P., Cheal, A., Cinner, J., Depczynski, M., Feary, D. A., Gagliano, M., Graham, N. A. J., Halford, A. R., Halpern, B. S., Harborne, A. R., Hoey, A. S., Holbrook, S. J., Jones, G. P., Kulbicki, M., Letourneur, Y., De Loma, T. L., McClanahan, T., McCormick, M. I., Meekan, M. G., Mumby, P. J., Munday, P. L., Ohman, M. C., Pratchett, M. S., Riegl, B., Sano, M., Schmitt, R. J., Syms, C. Crucial knowledge gaps in current understanding of climate change impacts on coral reef fishes Journal of Experimental Biology 894-900 Journal Article
2010 Yancey, P. H., Heppenstall, M., Ly, S., Andrell, R. M., Gates, R. D., Carter, V.L., Hagedorn, M. Betaines and dimethylsulfoniopropionate as major osmolytes in Cnidaria with endosymbiotic dinoflagellates Physiological and Biochemical Zoology 167-173 Journal Article
2009 Adjeroud, M., Michonneau, F., Edmunds, P. J., Chancerelle, Y., de Loma, T. L., Penin, L., Thibaut, L., Vidal-Dupiol, J., Salvat, B., Galzin, R. Recurrent disturbances, recovery trajectories, and resilience of coral assemblages on a South Central Pacific reef Coral Reefs  ISI:000268323800026 775-780 Journal Article
2009 Alldredge, A.L., King, J. M. Near-surface enrichment of zooplankton over a shallow back reef: Implications for coral reef food webs Coral Reefs 895-908 Journal Article
2009 Baskett, M. L., Gaines, S. D., Nisbet, R. M. Symbiont diversity may help coral reefs survive moderate climate change Ecological Applications  ISI:000263516200002 3-17 Journal Article
2009 Beldade, R., Holbrook, S. J., Schmitt, R. J., Planes, S., Bernardi, G. Isolation and characterization of eight polymorphic microsatellite markers from the orange-fin anemonefish, Amphiprion chrysopterus Conservation Genetics Resources 333-335 Journal Article
2009 Bergsma, G. S. Santa Barbara Ecological effects of finger-forming coral symbionts University of California Ecology, Evolution and Marine Biology Thesis or Dissertation
2009 Bergsma, G. S. Tube-dwelling coral symbionts induce significant morphological change in Montipora. Symbiosis 143-150 Journal Article
2009 Buenau, K. E. Santa Barbara The shifting landscapes of competition: Modeling the roles of space, size, and facilitation in marine benthic communities University of California Ecology, Evolution and Marine Biology 111 Thesis or Dissertation
2009 Chan, Y. L., Pochon, X., Fisher, M. A., Wagner, D., Concepcion, G. T., Kahng, S., Toonen, R. J., Gates, R. D. Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris BMC Ecology   21 Journal Article
2009 Edmunds, P. J. Effect of acclimatization to low temperature and reduced light on the response of reef corals to elevated temperature Marine Biology  ISI:000268018700005 1797-1808 Journal Article
2009 Ferrier, G. A., Carpenter, R. C. Subtidal benthic heterogeneity: flow environment modification and impacts on marine algal community structure and morphology Biological Bulletin 115-129 Journal Article
2009 Fitt, W. K., Gates, R. D., Hoegh-Guldberg, O., Bythell, J. C., Jatkar, A., Grottoli, A. G., Gomez, M., Fisher, P., Lajuenesse, T. C., Pantos, O., Iglesias-Prieto, R., Franklin, D. J., Rodrigues, L. J., Torregiani, J. M., van Woesik, R., Lesser, M. P. Response of two species of Indo-Pacific corals, Porites cylindrica and Stylophora pistillata, to short-term thermal stress: The host does matter in determining the tolerance of corals to bleaching Journal of Experimental Marine Biology and Ecology  ISI:000266897400004 102-110 Journal Article
2009 Fountain, T., Tilak, S., Shin, P., Holbrook, S. J., Schmitt, R. J., Brooks, A. J., Washburn, L., Salazar, D. Melbourne, Australia Digital Moorea cyberinfrastructure for coral reef monitoring IEEE Conferences Proceedings of the Fifth International Conference on Intelligent Sensors, Sensor Networks and Information Processing 2009 243-248 Conference Proceeding
2009 Goldenheim, W. M. Northridge, CA The effects of flow and temperature over multiple time scales on scleractinian growth and photo-physiology in Moorea, French Polynesia California State University Biology  Thesis or Dissertation
2009 Hedouin, L., Reichelt-Brushett, A. J., Gates, R. D. Assessment of metals and a metalloid in sediments from Hawaiian coral reef ecosystems. Marine Pollution Bulletin   1759-1765 Journal Article
2009 Kane, C. N., Brooks, A. J., Holbrook, S. J., Schmitt, R. J. The role of microhabitat preference and social organization in determining the spatial distribution of a coral reef fish Environmental Biology of Fishes  ISI:000261967800001 1-10 Journal Article
2009 Leray, M., Beldade, R., Holbrook, S. J., Schmitt, R. J., Planes, S., Bernardi, G. Isolation and characterization of 13 polymorphic nuclear microsatellite primers for the widespread Indo-Pacific three-spot damselfish, Dascyllus trimaculatus, and closely related D. auripinnis Molecular Ecology Resources  ISI:000262678900047 213-215 Journal Article
2009 Mayfield, A. B., Hirst, M. B., Gates, R. D. Gene expression normalization in a dual-compartment system: a real-time quantitative polymerase chain reaction protocol for symbiotic anthozoans Molecular Ecology Resources  ISI:000263333100003 462-470 Journal Article
2009 Muehllehner, N., Edmunds, P. J. Ft Lauderdale, FL Effects of ocean acidification and increased temperature on skeletal growth of two scleractinian corals, Pocillopora meandrina and Porites rus Nova Southeastern University Proceedings of the 11th International Coral Reef Symposium 2009 57-61 Conference Proceeding
2009 Muller, E. B., Doyle, F. J., Nisbet, R. M., Edmunds, P., Kooijman, S. Glascow, Scotland, U.K. Dynamic energy budgets of syntrophic symbiotic relationships between heterotrophic hosts and photoautotrophic symbionts Annual Meeting of the Society of Experimental Biology ISI:000267520700315 S145-S145 Conference Proceeding
2009 Muller, E. B., Kooijman, Salm, Edmunds, P. J., Doyle, F. J., Nisbet, R. M. Dynamic energy budgets in syntrophic symbiotic relationships between heterotrophic hosts and photoautotrophic symbionts Journal of Theoretical Biology  ISI:000267084400006 44-57 Journal Article
2009 Olson, N. D., Ainsworth, T. D., Gates, R. D., Takabayashi, M. Diazotrophic bacteria associated with Hawaiian Montipora corals: Diversity and abundance in correlation with symbiotic dinoflagellates Journal of Experimental Marine Biology and Ecology  ISI:000265466200005 140-146 Journal Article
2009 Palmer, C. V., Roth, M. S., Gates, R. D. Red Fluorescent Protein Responsible for Pigmentation in Trematode-Infected Porites compressa Tissues Biological Bulletin  ISI:000263442100007 68-74 Journal Article
2009 Poray, A. K. Northridge, CA Spatial escape at a physiological cost: consequences for coral reef macroalgae inhabiting refugia from herbivores. California State University Biology Thesis or Dissertation
2009 Putnam, H. M., Edmunds, P. J. Ft Lauderdale, FL Responses of coral hosts and their algal symbionts to thermal heterogeneity Nova Southeastern University Proceedings of the 11th International Coral Reef Symposium 2008 393-397 Conference Proceeding
2009 Schmitt, R. J., Holbrook, S. J., Brooks, A. J., Lape, J. C. P. Intraguild predation in a structured habitat: distinguishing multiple-predator effects from competitor effects Ecology  ISI:000269025700012 2434-2443 Journal Article
2009 Spitler, M. I. Northridge, CA Factors influencing the distribution and abundance of the dominant macroalgal species on coral reefs in Moorea, French Polynesia. California State University Biology Thesis or Dissertation
2009 Stat, M., Pochon, X., Cowie, R. O. M., Gates, R. D. Specificity in communities of Symbiodinium in corals from Johnston Atoll Marine Ecology-Progress Series  ISI:000268552500007 83-96 Journal Article
2009 Stier, A. C., Steele, M. A., Brooks, A. J. Coral reef fishes use crown-of-thorns seastar as habitat Coral Reefs  ISI:000263071800029 227-227 Journal Article
2009 Van Oppen, M. J. H., Leong, J. A., Gates, R. D. Coral-virus interactions: A double-edged sword? Symbiosis  ISI:000264431200001 1-8 Journal Article
2008 Edmunds, P. J. The effects of temperature on the growth of juvenile scleractinian corals Marine Biology  ISI:000254260800013 153-162 Journal Article
2008 Edmunds, P. J., Gates, R. D. Acclimatization in tropical reef corals Marine Ecology-Progress Series  ISI:000257413800028 307-310 Journal Article
2008 Edmunds, P. J. Differential effects of high temperature on the respiration of juvenile caribbean corals Bulletin of Marine Science  ISI:000260894200002 453-464 Journal Article
2008 Green, D. H., Edmunds, P. J., Carpenter, R. C. Increasing relative abundance of Porites astreoides on Caribbean reefs mediated by an overall decline in coral cover Marine Ecology-Progress Series  ISI:000256338000001 1-10 Journal Article
2008 Hench, J. L., Leichter, J. J., Monismith, S. G. Episodic circulation and exchange in a wave-driven coral reef and lagoon system Limnology and Oceanography  ISI:000261355500029 2681-2694 Journal Article
2008 Holbrook, S. J., Brooks, A. J., Schmitt, R. J., Stewart, H. L. Effects of sheltering fish on growth of their host corals Marine Biology  ISI:000259276300006 521-530 Journal Article
2008 Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Resistance and resilience of a coral reef fish community to changes in coral cover Marine Ecology-Progress Series  ISI:000261797800025 263-271 Journal Article
2008 Lenihan, H. S., Adjeroud, M., Kotchen, M. J., Hench, J. L., Nakamura, T. Reef structure regulates small-scale spatial variation in coral bleaching Marine Ecology-Progress Series  ISI:000261229600011 127-141 Journal Article
2008 Lison de Loma, T., Osenberg, C. W., Shima, J. S., Chancerelle, Y., Davies, N., Brooks, A. J., Galzin, R. A framework for assessing impacts of marine protected areas in Moorea (French Polynesia) Pacific Science ISI:000256127600015 431-441 Journal Article
2008 Manning, M. M., Gates, R. D. Diversity in populations of free-living Symbiodinium from a Caribbean and Pacific reef Limnology and Oceanography  ISI:000259356000013 1853-1861 Journal Article
2008 Morrow, K. M., Carpenter, R. C. Macroalgal morphology mediates particle capture by the corallimorpharian Corynactis californica Marine Biology  ISI:000258576500003 273-280 Journal Article
2008 Morrow, K., Carpenter, R. Shallow kelp canopies mediate macroalgal composition: effects on the distribution and abundance of Corynactis californica (Corallimorpharia) Marine Ecology-Progress Series 119-127 Journal Article
2008 Muehllehner, N. Northridge, CA Growth and morphology in Acropora under increasing carbon dioxide and the effect of increased temperature and carbon dioxide on the photosynthesis and growth of Porites rus and Pocillopora meandrina California State University Biology  Thesis or Dissertation
2008 Price, N. N. Santa Barbara Structuring processes for benthic communities: Habitat selection, facilitation, and competition on a coral reef University of California Ecology, Evolution and Marine Biology   117 Thesis or Dissertation
2008 Putnam, H. M., Edmunds, P. J., Fan, T.- Y. Effect of temperature on the settlement choice and photophysiology of larvae from the reef coral Stylophora pistillata Biological Bulletin  ISI:000260049800003 135-142 Journal Article
2008 Putnam, H. M., Edmunds, P. J. Northridge, CA The effects of temperature fluctuations on coral physiology. California State University Biology  Thesis or Dissertation
2008 Rosman, J. H., Hench, J. L., Koseff, J. R., Monismith, S. G. Extracting Reynolds stresses from acoustic Doppler current profiler measurements in wave-dominated environments Journal of Atmospheric and Oceanic Technology  ISI:000253582700010 286-306 Journal Article
2008 Skoog, A., Alldredge, A., Passow, U., Dunne, J., Murray, J. Neutral aldoses as source indicators for marine snow Marine Chemistry  ISI:000253332400006 195-206 Journal Article
2008 Stat, M., Gates, R. D. Vectored introductions of marine endosymbiotic dinoflagellates into Hawaii Biological Invasions  ISI:000254086900018 579-583 Journal Article
2008 Stat, M., Morris, E., Gates, R. D. Functional diversity in coral-dinoflagellate symbiosis Proceedings of the National Academy of Sciences of the United States of America  ISI:000257645400024 9256-9261 Journal Article
2007 Apprill, A. M., Bidigare, R. R., Gates, R. D. Visibly healthy corals exhibit variable pigment concentrations and symbiont phenotypes Coral Reefs  ISI:000247307100022 387-397 Journal Article
2007 Apprill, A. M., Gates, R. D. Recognizing diversity in coral symbiotic dinoflagellate communities Molecular Ecology  ISI:000244602500002 1127-1134 Journal Article
2007 Brooks, A. J., Holbrook, S. J., Schmitt, R. J. Patterns of microhabitat use by fishes in the patch-forming coral Porites rus Raffles Bulletin of Zoology (Supplement) 245-254 Journal Article
2007 Buenau, K. E., Rassweiler, A., Nisbet, R. M. The effects of landscape structure on space competition and alternative stable states Ecology  ISI:000251965200008 3022-3031 Journal Article
2007 Carpenter, R. C., Williams, S. L. Mass transfer limitation of photosynthesis of coral reef algal turfs Marine Biology  ISI:000245125400004 435-450 Journal Article
2007 Edmunds, P. J. Evidence for a decadal-scale decline in the growth rates of juvenile scleractinian corals Marine Ecology-Progress Series  ISI:000248392300001 1-13 Journal Article
2007 Elahi, R., Edmunds, P. J. Determinate growth and the scaling of photosynthetic energy intake in the solitary coral Fungia concinna (Verrill) Journal of Experimental Marine Biology and Ecology  ISI:000249264600016 183-193 Journal Article
2007 Haring, R. N., Carpenter, R. C. Habitat-induced morphological variation influences photosynthesis and drag on the marine macroalga Pachydictyon coriaceum Marine Biology  ISI:000244485800022 243-255 Journal Article
2007 Hoegh-Guldberg, O., Muller-Parker, G., Cook, C. B., Gates, R. D., Gladfelter, E., Trench, R. K., Weis, V. M. Len Muscatine (1932-2007) and his contributions to the understanding of algal-invertebrate endosymbiosis Coral Reefs  ISI:000251579300001 731-739 Journal Article
2007 Holbrook, S. J., Schmitt, R. J., Brooks, A. J., Margalith, T., Burnsed, J., Seydel, K., Masui, H. Tokyo The use of LED light lures to enhance larval settlement of coral reef fish Technical Information Institute Co. Ltd. State of the Art: High Power LED Application Practices 326-338 Book Chapter
2007 Leggat, W., Ainsworth, T., Bythell, J., Dove, S., Gates, R., Hoegh-Guldberg, O., Iglesias-Prieto, R., Yellowlees, D. The hologenome theory disregards the coral holobiont Nature Reviews Microbiology  ISI:000249525500028 Journal Article
2007 Leichter, J. J., Denny, M. W., Gaines, S. D. Berkeley, CA Internal waves University of California Encyclopedia of Tidepools and Rocky Shores 637-639 Book Chapter
2007 Lesser, M. P., Bythell, J. C., Gates, R. D., Johnstone, R. W., Hoegh-Guldberg, O. Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data Journal of Experimental Marine Biology and Ecology  ISI:000247155600005 36-44 Journal Article
2007 Maheigan, M. E. Northridge, CA Spatial scale of morphological variation of the corals Pocillopora verrucosa and Porites porites. California State University Biology  Thesis or Dissertation
2007 Mayfield, A. B., Gates, R. D. Osmoregulation in anthozoan-dinoflagellate symbiosis Comparative Biochemistry and Physiology a-Molecular & Integrative Physiology  ISI:000245995700001 1-10 Journal Article
2007 Ohlmann, C., White, P., Washburn, L., Terrill, E., Emery, B., Otero, M. Interpretation of coastal HF radar-derived surface currents with high-resolution drifter data Journal of Atmospheric and Oceanic Technology  ISI:000245742900010 666-680 Journal Article
2007 Padilla-Gamiño, J. L.., Carpenter, R. C. Seasonal acclimatization of Asparagopsis taxiformis (Rhodophyta) from different biogeographic regions Limnology and Oceanography  ISI:000245145200031 833-842 Journal Article
2007 Padilla-Gamiño, J. L., Carpenter, R. C. Thermal ecophysiology of Laurencia pacifica and Laurencia nidifica (Ceramiales, Rhodophyta) from tropical and warm-temperate regions Journal of Phycology  ISI:000248544800007 686-692 Journal Article
2007 Penin, L., Adjeroud, M., Schrimm, M., Lenihan, H. S. High spatial variability in coral bleaching around Moorea (French Polynesia): patterns across locations and water depths Comptes Rendus Biologies  ISI:000244924400009 171-181 Journal Article
2007 Schmitt, R. J., Holbrook, S. J. The scale and cause of spatial heterogeneity in strength of temporal density dependence Ecology  ISI:000246369900019 1241-1249 Journal Article
2007 Schmitt, R. J., Holbrook, S. J. Predicting the magnitude of temporal variation in young-of-year class strength of surfperch (Teleostei : Embiotocidae) Raffles Bulletin of Zoology (Supplement) ISI:000244303400020 161-166 Journal Article
2007 Stewart, H. L., Payri, C. E., Koehl, M. A. R. The role of buoyancy in mitigating reduced light in macroalgal aggregations Journal of Experimental Marine Biology and Ecology  ISI:000245262200002 11-20 Journal Article
2007 Talmage, S. C. Northridge, CA Variation in abundance and carbon allocation for Sargassum mangarevense across gradients in herbivory and hydrodynamic exposure in Moorea, French Polynesia. California State University Biology  Thesis or Dissertation
2007 Washburn, L. Berkeley, CA Coastal Currents University of California Encyclopedia of Tidepools and Rocky Shores 168-172 Book Chapter
2006 Brooks, A. J. Australian Institute for Marine Sciences, Townsville, Australia Digital Moorea: The implementation of a wireless sensor network for the monitoring of coral reefs.  Workshop on the Adoption of Sensor Networks by Coastal Managers   11-16 Conference Proceeding
2006 Bruno, J. F., Lee, S. C., Kertesz, J. S., Carpenter, R. C., Long, Z. T., Duffy, J. E. Partitioning the effects of algal species identity and richness on benthic marine primary production Oikos  ISI:000240998300017 170-178 Journal Article
2006 Carpenter, R., Edmunds, P. Local and regional scale recovery of Diadema promotes recruitment of scleractinian corals Ecology Letters 271-280 Journal Article
2006 Holbrook, S. J., Brooks, A. J., Schmitt, R. J. Okinawa, Japan Relationships between live coral cover and reef fishes: implications for predicting effects of environmental disturbances Proceedings of the 10th International Coral Reef Symposium   241-249 Conference Proceeding
2006 Kane, C. Santa Barbara Habitat preference, social behavior and patterns of abundance in the coral reef fish Paracirrhites arcatus. University of California Ecology, Evolution and Marine Biology   52 Thesis or Dissertation
2006 Ridgway, T., Gates, R. D. Why are there so few genetic markers available for coral population analyses? Symbiosis  ISI:000237345200001 1-7 Journal Article
2006 Schmitt, R. J., Holbrook, S. J. Okinawa, Japan Developmental delays, recruitment storage and adult attrition rates in local populations of a tropical damselfish Proceedings of the 10th International Coral Reef Symposium   232-240 Conference Proceeding
2006 Stewart, H. L. Ontogenetic changes in buoyancy, breaking strength, extensibility, and reproductive investment in a drifting macroalga Turbinaria ornata (Phaeophyta) Journal of Phycology  ISI:000235220500005 43-50 Journal Article
2006 Stewart, H. L., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Symbiotic crabs maintain coral health by clearing sediments Coral Reefs  ISI:000242058400017 609-615 Journal Article
2006 Stewart, H. L. Morphological variation and phenotypic plasticity of buoyancy in the macroalga Turbinaria ornata across a barrier reef Marine Biology  ISI:000238683900003 721-730 Journal Article
2006 Stewart, H. L. Hydrodynamic consequences of flexural stiffness and buoyancy for seaweeds: a study using physical models Journal of Experimental Biology  ISI:000237643700025 2170-2181 Journal Article
2006 Thompson, A. R., Nisbet, R. M., Schmitt, R. J. Dynamics of mutualist populations that are demographically open Journal of Animal Ecology  ISI:000241158600002 1239-1251 Journal Article
2006 Van Oppen, M. J. H., Gates, R. D. Conservation genetics and the resilience of reef-building corals Molecular Ecology  ISI:000241388800001 3863-3883 Journal Article
2005 Elahi, R., Edmunds, P. J. Northridge, CA Effects of age and size on the growth and physiology of scleractinian corals California State University Biology   96 Thesis or Dissertation
2005 Holbrook, S. J., Schmitt, R. J. Growth, reproduction and survival of a tropical sea anemone (Actiniaria): benefits of hosting anemonefish Coral Reefs ISI:000227742400010 67-73 Journal Article
2005 Lape, J. C. P. Factors influencing the quality of a refuge for coral reef fish: effects of microhabitat setting, size and inhabitants. Ecology Evolution and Marine Biology  Thesis or Dissertation
2005 Maritorena, S., Siegel, D. A. Consistent merging of satellite ocean color data sets using a bio-optical model Remote Sensing of Environment  ISI:000227046700001 429-440 Journal Article
2005 Siegel, D. A., Maritorena, S., Nelson, N. B., Behrenfeld, M. J., McClain, C. R. Colored dissolved organic matter and its influence on the satellite-based characterization of the ocean biosphere Geophysical Research Letters  ISI:000233105000007 Journal Article
2005 Siegel, D. A., Maritorena, S., Nelson, N. B., Behrenfeld, M. J. Independence and interdependencies among global ocean color properties: Reassessing the bio-optical assumption Journal of Geophysical Research-Oceans  ISI:000230918600001 Journal Article
2005 Thompson, A. R. Dynamics of demographically open mutualists: immigration, intraspecific competition, and predation impact goby populations Oecologia  ISI:000227369700006 61-69 Journal Article