Populations

Sustainable reference points for multispecies coral reef fisheries.

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2023
Hidden heatwaves and severe coral bleaching linked to mesoscale eddies and thermocline dynamics.

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2023
Microbiome ecological memory and responses to repeated marine heatwaves clarify variation in coral bleaching and mortality.

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2023
Coral restoration for coastal resilience: Integrating ecology, hydrodynamics, and engineering at multiple scales.

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2023
Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes.

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2023
Fish feces reveal diverse nutrient sources for coral reefs.

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2023
Asynchrony in coral community structure contributes to reef-scale community stability.

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2023
Corallivory on small Porites colonies increases with coral colony size but is reduced by macroalgal associational refuge.

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2023
Habitat attributes mediate herbivory and influence community development in algal metacommunities.

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2023
Best practices for generating and analyzing 16S rRNA amplicon data to track coral microbiome dynamics.

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2023
Positive interactions between corals and damselfish increase coral resistance to temperature stress.

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2023
Microbial interactions with dissolved organic matter are central to coral reef ecosystem function and resilience.

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2023
Cascading benefits of mutualists’ predators on foundation species: a model inspired by coral reef ecosystems.

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2023
Using machine learning to achieve simultaneous, georeferenced surveys of fish and benthic communities on shallow reefs.

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2023
Reef habitats’ structure symbiotic microalgal assemblages in corals and contribute to differential heat stress responses.

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2023

MCR LTER: Coral Reef Resilience: Live and Dead Pocillopora and Acropora Coral Colony Time Series from 2006 to 2011

These data describe the abundance, size structure, and morphologies of living and dead corals belonging to the genera Pocillopora and Acropora on the forereef (depth = 10 meters) in 2006, 2009, 2010, and 2011. Data were derived from a randomly chosen subset of photo quadrats associated with knb-lter-mcr.4. For each quadrat, individual coral colonies were identified to genus, scored as living or dead, and the total area of their footprint calculated.

MCR LTER: Coral Reef Resilience: Benthic Dynamics on 5m by 5m Plots on the Forereef, 2009 - 2011

These data describe the dynamics of corals, invertebrates, and fishes on 5 m X 5 m plots on the forereef following an outbreak of corallivorous crown-of-thorns seastars (Acanthaster planci) that caused mass coral mortality (see Adam et al. 2011). Twenty plots were first established at Resilience 2 during July 2009. Half of these plots were randomly assigned to a structure removal treatment and all dead coral structure was removed by divers, while the other half remained unmanipulated.

MCR LTER: Coral Reef Resilience: Algae, Coral, and Sediment data from Grazing Intensity Experiment, 2010 - 2012

These data describe the percent cover of benthic space holders (primarily algae), the biomass of algae and sediment, and the number of corals recruiting on 15 cm X 15 cm terra cota tiles experimentally manipulated on the forereef on the north shore of Moorea. The experiment was established to test whether and how different levels of grazing influence benthic community development. Five treatments were initially established to create a gradient in grazing pressure with a sixth treatment established shortly thereafter. Each treatment was replicated ten times using a randomized block design.

MCR LTER: Coral Reef Resilience: Juvenile Parrotfish Habitat Associations at North Shore Fringe and Backreef in March 2011

These data describe habitat associations of juvenile parrotfish (Scaridae) encountered during systematic searches at LTER 1 and LTER 2 fringing reef and back reef sites during March 2011. At each site SCUBA divers or snorkelers identified, counted, and estimated the sizes of juvenile parrotfish and recorded the microhabitat that each individual or group of individuals was associated with on two 100 m x 10 m wide transects (n = 8 transects total). Upon encountering a juvenile or group of juveniles, the surveyor recorded the microhabitat type that fishes were first seen to be closest to.

MCR LTER: Coral Reef Resilience: Herbivore Bite Rates on the North Shore Forereef July-August 2010

These data describe bite rates of two abundant species of roving herbivorous fishes found on the forereef, Chlorurus sordidus (Scaridae), and Ctenochaetus striatus (Acanthuridae). During several days in July and August 2010, a SCUBA diver followed individual focal fish for a period of up to 5 minutes and recorded the number of bites taken as well the types of substrates bitten. Upon randomly locating a focal individual, divers estimated the total length of that individual as well as their depth at the initiation (and termination) of the observation. Data are organized in two data tables.

MCR LTER: Coral Reef Resilience: North Shore Herbivorous Fish Counts, Habitat Associations, and Substrate, 2010

These data describe the species abundance, size distributions, and habitat associations of roving herbivorous fishes (fishes belonging to the families, Acanthuridae, Scaridae, and Siganidae) found in different habitats in the lagoon and forereef on the north shore of Moorea. Adult fishes and large juveniles were counted (and their size estimated) by a SCUBA diver or snorkeler on thirty-four 50 m by 5 m wide transects. After counting large fishes, the entire transect was swam a second time, with the diver looking exclusively for small juvenile fishes on a 1 m swath.

MCR LTER: Reference: Fish Taxonomy, Trophic Groups and Morphometry

These reference data document the maximum length, length to weight conversion parameters, trophic status, and items consumed for fish species observed in the Annual Fish Survey Time-series core data set (knb-lter-mcr.6). With knb-lter-mcr.6, these data enable the investigation of temporal trends in the biomass of taxa as well as the abundance and biomass of different trophic groups. This material is based upon work supported by the U.S. National Science Foundation under Grant No. OCE 16-37396 (and earlier awards) as well as a generous gift from the Gordon and Betty Moore Foundation.

MCR LTER: Coral Reef: Early life stage bottleneck determines rates of coral recovery following severe disturbance; Data for Speare et al., 2024, Ecology

The data included in this data package were collected on the north shore of Moorea, French Polynesia, from 2011-2018 to evaluate drivers of different recovery rates of corals at two depths (10m and 17m). Data on juvenile coral densities, growth, and mortality, were collected from annual time series photoquadrats. Data from two experiments on coral settlement tiles were used to evaluate how exclusion of fishes influences the density of coral recruits, and the survival of coral recruits at 10 and 17m.

MCR LTER: Coral Reef: Quantifying 2019 coral bleaching; data for Kopecky et al., 2023 Remote Sensing

This data package contains a dataset generated using image AI-assisted image segmentation of live and dead corals within ortho-photomosaics of benthic reef habitat on the North shore fore reef of Moorea, French Polynesia. The orthophotomosaics were produced through a rigorous method of underwater photogrammetry that allowed for spatial and temporal co-registration of ortho-photomosaics of the same location over time (for full photogrammetric methods, see Nocerino et al. 2020: https://doi.org/10.3390/rs12183036). Using the image segmentation software, TagLab (see Pavoni et al.

MCR LTER: Coral Reef: 3D photogrammetry improves measurement of growth and biodiversity patterns in branching corals; data for Curtis 2023, Coral Reefs

These data and code were generated in support of the manuscript: Curtis JS, Galvan JW, Primo A, Osenberg CW, and AC Stier, Coral Reefs. We collected manual and photogrammetry-based measurements of coral size and volume to examine which method best described short-term coral growth and links between coral habitat and biodiversity of CAFI (coral-associated fishes and invertebrates).

MCR LTER: Coral Reef: Asynchrony in coral community structure contributes to reef‑scale community stability, data for Srednick et al., Nature 2023

These data were generated in support of the manuscript: Srednick G, Davis K, and Edmunds P, Nature To evaluate whether spatial insurance effects are important on coral reefs, we explored variation over 2006–2019 in coral community structure and environmental conditions in Moorea, French Polynesia. We studied coral community structure at a single site with fringing, back reef, and fore reef habitats, and used this system to explore associations among community asynchrony, asynchrony of environmental conditions, and community stability.

MCR LTER: Coral Reef: Farmerfish gardens help buffer stony corals against marine heat waves, data for Honeycutt et al., PLOS One 2023

These data were generated in support of the manuscript: Honeycutt RC, Holbrook SJ, Brooks, AJ, and RJ Schmitt, PLOS One In Moorea, French Polynesia, we evaluated the response and fate of stony coral following a major thermal stress event in 2019 that caused a substantial amount of branching coral (dominantly Pocillopora) to bleach and die. We investigated whether Pocillopora colonies that occurred within territorial gardens protected by the farmerfish Stegastes nigricans were less susceptible to or survived bleaching better than Pocillopora on adjacent, undefended substrate.

MCR LTER: Coral Reef: Priority effects in coral-macroalgae interactions can drive alternate community paths in the absence of top-down control, data for Adam 2022 Ecology

These data were generated in support of the manuscript: Adam TC, Holbrook SJ, Burkepile DE, Speare KE, Brooks AJ, Ladd MC, Shantz AA, Thurber RLV, and Schmitt RJ, Ecology The outcomes of species interactions can vary greatly in time and space with the outcomes of some interactions determined by priority effects. On coral reefs, benthic algae rapidly colonize the disturbed substrate. In the absence of top-down control from herbivorous fishes, these algae can inhibit the recruitment of reef-building corals, leading to a persistent phase shift to a macroalgae-dominated state.

MCR LTER: Coral Reef: Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals; data for Kelly et al., 2022 PNAS

Metabolites exuded by primary producers comprise a significant fraction of marine dissolved organic matter, a poorly characterized, heterogenous mixture that dictates microbial metabolism and biogeochemical cycling. We present a foundational untargeted molecular analysis of exudates released by coral reef primary producers using liquid chromatography–tandem mass spectrometry to examine compounds produced by two coral species and three types of algae (macroalgae, turfing microalgae, and crustose coralline algae [CCA]) from Mo’orea, French Polynesia.

MCR LTER: Coral Reef: Biodiversity has a positive but saturating effect on imperiled coral reefs; data for Clements and Hay 2021, Science Advances

Species loss threatens ecosystems worldwide, but the ecological processes and thresholds that underpin positive biodiversity effects among critically important foundation species, such as corals on tropical reefs, remain inadequately understood. In field experiments, we manipulated coral species richness and intraspecific density to test whether, and how, biodiversity affects coral productivity and survival. Corals performed better in mixed species assemblages.

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