Publications

Year	Citations	Publication Type
In Press	Elahi, R.,, Edmunds, P. J.,, Gates, R. D.,, Kuffner, I. B.,, Barnes, B. B.,, Chollett, I.,, Courtney, T. A.,, Guest, J. R.,, Lenz, E. A.,, Toth, L. T.,, Viehman, S., and, Williams, I. D. Scale dependence of coral reef oases and their environmental correlates. Ecological Applications	Journal Article
In Press	Johnston, E. C.,, Wyatt, A. S. J.,, Leichter, J. J., and, Burgess, S. C. Niche difference in co-occurring cryptic coral species (Pocillopora spp.). Coral Reefs	Journal Article
In Press	Reed, D. C.,, Schmitt, R. J.,, Burd, A. B.,, Burkepile, D. E.,, Kominoski, J, S.,, McGlathery, K. J.,, Miller, R. J.,, Morris, J. T., and, Zinnert, J. C. Responses of coastal ecosystems to climate change: insights from long-term ecological research. Biosphere	Journal Article
2022	Adam, T. C.,, Holbrook, S. J.,, Burkepile, D. E.,, Speare, K. E.,, Brooks, A. J.,, Ladd, M. C.,, Vega-Thurber, R., and, Schmitt, R. J. Priority effects in coral-macroalgae interactions can drive alternate community paths in the absence of top-down control. Ecology e3831	Journal Article
2022	Detmer, A. R.,, Cunning, R.,, Pfab, F.,, Brown, A. L.,, Stier, A. C.,, Nisbet, R. M., and, Moeller, H. V. Fertilization by coral-dwelling fish promotes coral growth but can exacerbate bleaching response. Journal of Theoretical Biology 541 111087	Journal Article
2022	Edmunds, P. J. Finding signals in the noise of coral recruitment. Coral Reefs 41 81-93	Journal Article
2022	Geiser, E.,, Kominoski, J.,, McKnight, D.,, Bahlai, C.,, Cheng, C.,, Record, S.,, Wollheim, W.,, Christianson, K.,, Downs, M.,, Hawman, P.,, Holbrook, S.,, Kumar, A.,, Mishra, D.,, Molotch, N.,, Primack, R.,, Rassweiller, A.,, Schmitt, R., and, Sutter, L. Long-term ecological research and the COVID-19 anthropause: A window to understanding social-ecological disturbance. Ecosphere 13 e4019	Journal Article
2022	Grayson, N.,, Clements, C. S.,, Towner, A. A.,, Beatty, D. S., and, Hay, M. E. Did the overharvesting of sea cucumbers make coral less resistant to pathogens. Coral Reefs 41 447-453	Journal Article
2022	Grupstra, C. G. B.,, Howe-Kerr, L. I.,, Veglia, A. J.,, Bryant, R. L.,, Coy, S. R.,, Blackwelder, P. L., and, Correa, A. M. S. Thermal stress triggers productive viral infection of a key coral reef symbiont. ISME Journal 16 1430-1441	Journal Article
2022	Holbrook, S. J.,, Wencelius, J.,, Dubel, A. K.,, Adam, T. C.,, Cook, D. C.,, Hunter, C. E.,, Lauer, M.,, Lester, S. E.,, Miller, S. D.,, Rassweiler, A., and, Schmitt, R. J. Spatial co-variation in nutrient enrichment and fishing of herbivores in an oceanic coral reef ecosystem. Ecological Applications 32 e2515	Journal Article
2022	Lauer, M.,, Atgar, T.,, Holbrook, S. J.,, Rassweiler, A.,, Schmitt, R. J., and, Wencelius, J. Who is perturbed by ecological perturbations? Marine scientists and Polynesian fishers understandings of a Crown-Of-Thorns Starfish outbreak. Cooling Down Chapter 3 65-89	Book Chapter
2022	Rassweiler, A.,, Miller, S. D.,, Holbrook, S. J.,, Lauer, M.,, Strother, M. A.,, Lester, S. E.,, Adam, T. C.,, Wencelius, J., and, Schmitt, R. J. How do fishers responses to macroalgal overgrowth influence the resilience of coral reefs? Limnology and Oceanography 67 S365-S377	Journal Article
2022	Schmitt, R. J.,, Holbrook, S. J.,, Brooks, A. J., and, Adam, T. C. Evaluating the precariousness of coral recovery when coral and macroalgae are alternative basins of attraction. Limnology and Oceanography 67 S285-S297	Journal Article
2022	Speare, K. E.,, Adam, T. C.,, Winslow, E. M.,, Lenihan, H. S., and, Burkepile, D. E. Size-dependent mortality of corals during marine heatwave erodes recovery capacity of coral reef. Global Change Biology 28 1342-1358	Journal Article
2022	Strader, M. E.,, Howe-Kerr, L. I.,, Sims, J. A.,, Speare, K. E.,, Shore, A. N.,, Burkepile, D. E., and, Correa, A. M. S. Nitrate enrichment has lineage specific effects on Pocillopora acuta adults, but no transgenerational effects in planulae. Coral Reefs 41 303-317	Journal Article
2022	Wegley Kelly, L.,, Nelson, C. E.,, Petra, D.,, Koester, I.,, Quinlan, Z. A.,, Arts, M. G. I.,, Nothias, L.-F.,, Comstock, J.,, White, B. M.,, Hopmans, E. C.,, van Duyl, F. C.,, Carlson, C. A.,, Aluwihare, L. I., Dorrestein, P. C., and, Haas, A. F. Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals. Proceedings of the National Academy of Sciences of the United States of America 119 (5):e2110283119	Journal Article
2021	Adam, T. C., Burkepile, D. E. , Holbrook, S. J., Carpenter, R. C., Claudet, J., Loiseau, C., Thiault, L., Brooks, A. J., Washburn, L., Schmitt, R. J. Landscape-scale patterns of nutrient enrichment in a coral reef ecosystem: Implications for coral to algae phase shifts. Ecological Applications 31 e2227	Journal Article
2021	Allgeier, J. E.,, Weeks, B. C.,, Munsterman, K. S.,, Wale, N.,, Wenger, S. J.,, Parravicini, V.,, Schiettekatte, N. M. D.,, Villeger, S., and, Burkepile, D. E. Phylogenetic conservatism drives nutrient dynamics of coral reef fishes. Nature Communications 12 5432	Journal Article
2021	Becker, D. M.,, Putnam, H. M.,, Burkepile, D. E.,, Adam, T. C.,, Vega-Thurber, R., and, Silbiger, N. Chronic low-level nutrient enrichment benefits coral thermal performance in a fore reef habitat. Coral Reefs 40 1637-1655	Journal Article
2021	Burgess, S. C.,, Johnston, E. C.,, Wyatt, A. S.,, Leichter, J. J., and, Edmunds, P. J. Response diversity in corals: hidden differences in bleaching mortality among cryptic Pocillopora species.  Ecology 102 (6):e03324	Journal Article
2021	Carlot, J.,, Kayal, M.,, Lenihan, H. S.,, Brandl, S. J.,, Casey, J. M.,, Adjeroud, M.,, Cardini, U., Merciere, A.,, Espiau, B.,, Barneche, D. R.,, Rovere, A.,, Hedouin, L., and, Parravicini, V. Juvenile corals underpin coral reef carbonate production after disturbance.  Global Change Biology 27 2623-2632	Journal Article
2021	Clements, C. S., and, Hay, M. E. Biodiversity has a positive but saturating effect on imperiled reefs. Science Advances 7 eabi8592	Journal Article
2021	Correa, A. M. S.,, Howard-Varona, C.,, Coy, S. R.,, Buchan, A.,, Sullivan, M. B., and, Weitz, J. S. Revisiting the rules of life for viruses of microorganisms. Nature Reviews Microbiology 19 501-513	Journal Article
2021	Cowles, J.,, Templeton, L.,, Battles, J. J.,, Edmunds, P. J.,, Carpenter, R. C.,, Carpenter, S. R.,, Nelson, M. P.,, Cleavitt, N. L.,, Fahey, T. J.,, Groffman, P. M.,, Sullivan, J. H.,, Neel, M. C.,, Hansen, G. J. A.,, Hobbie, S.,, Holbrook, S. J.,, Kazanski, C. E.,, Seabloom, E. W.,, Schmitt, R. J.,, Stanley, E. H.,, Tepley, A. J.,, van Doorn, N. S., and, Vander Zandem, J. M. Resilience: insights from the U.S. Long Term Ecological Research Network. Ecosphere 12 e03434	Journal Article
2021	Dennison, W. C.,, Bracken, M. E. S.,, Brown, M.,, Bruno, J. F.,, Carlton, J. T.,, Carpenter, R. C.,, Carruthers, T. J. B.,, Dethier, M. N.,, Duarte, C. M.,, Fisher, T. R.,, Fourquean, J. W.,, Grosberg, R. K.,, Hamdan, L. J.,, Heck, K. L.,, Howard, D. J.,, Hughes, A. R.,, Hughes, B. B.,, Kendrick, G. A.,, Kenworthy, W. J.,, Mars, F.,, McRoy, C. P.,, Naylor, R. L.,, Nyden, B.,, Ogden, J. C.,, Olyarnik, S.,, Orth, R. J.,, Short, F. T.,, Sorte, C. J. B.,, Stachowicz, J. J.,, Strong, D. R.,, Sur, C., and, Waycot, M. Susan Lynn Williams: the life of an exceptional scholar, leader, and friend (1951-2018). Estuaries and Coasts 44 304-311	Journal Article
2021	Donovan, M. K.,, Burkepile, D. E.,, Krathochwill, C.,, Shlesinger, T.,, Sully, S.,, Oliver, T. A.,, Hodgson, G.,, Friewald, J., and, van Woesik, R. Local conditions magnify coral loss following marine heatwaves. Science 372 977-980	Journal Article
2021	Edmunds, P. J. Spatiotemporal variation in coral recruitment and its association with seawater temperature. Limnology and Oceanography 66 1394-1408	Journal Article
2021	Evensen, N. R.,, Bozec, Y.-M.,, Edmunds, P. J., and, Mumby, P. J. Scaling the effects of ocean acidification on coral growth and coral-coral competition on coral community recovery. PeerJ 9 e11608	Journal Article
2021	Ezzat, L.,, Merolla, S.,, Clements, C. S.,, Munsterman, K. S.,, Landfield, K.,, Stensrud, C.,, Schmeltzer, E. R.,, Burkepile, D. E., and, Vega-Thurber, R. Thermal stress interacts with surgeonfish feces to increase coral susceptibility to dysbiosis and reduce tissue regeneration. Frontiers in Microbiology 12 620458	Journal Article
2021	Figueroa, R. I.,, Howe-Kerr, L. I., and, Correa, A. M. S. Direct evidence of sex in Symbiodiniaceae and a hypothesis about meiosis in Symbiodiniacae. Scientific Reports 11 18838	Journal Article
2021	Grottoli, A. G.,, Toonen, R. J.,, VanWoesik, R.,, Vega-Thurber, R.,, Warner, M. E.,, McLachlan, R. H.,, Price, J. T.,, Bahr, K. D.,, Baums, I. B.,, Castillo, K. D.,, Coffroth, M. A.,, Cunning, R.,, Dobson, K. L.,, Donahue, M. J.,, Hench, J. L.,, Iglesias-Prieto, R.,, Kemp, D. W.,, Kenkel, C. D.,, Kline, D. I.,, Kuffner, I. B.,, Matthews, J. L.,, Mayfield, A. B.,, Padilla-Gamino, J. L.,, Palumbi, S.,, Voolstra, C. R.,, Weis, V. M., and , Wu, H. C. Increasing comparability among coral bleaching experiments.  Ecological Applications 31 (4):e02262	Journal Article
2021	Grupstra, C. G.,, Rabbitt, K. M.,, Howe-Kerr, L. I., and, Correa, A. M. S. Fish predation on corals promotes the dispersal of coral symbionts. Animal Microbiome 3 25	Journal Article
2021	Hall, T. E.,, Freedman, A. S.,, DeRoos, A. M.,, Edmunds, P. J.,, Carpenter, R. C., and, Gross, K. Stony coral populations are more sensitive to changes in vital rates in disturbed environments. Ecological Applications 31 (2):e02234	Journal Article
2021	Hunter, C. E. and, Lauer, M. Ecosystems services research in action: reflexively valuing environments in the South Pacific. Ecology and Society 26 24	Journal Article
2021	Kopecky, K. L.,, Cook, D. T.,, Schmitt, R. J., and, Stier, A. C. Effects of corallivory and coral colony density on coral growth and survival. Coral Reefs 40 283-288	Journal Article
2021	Ladd, M. R.,, Winslow, E.,, Burkepile, D. E., and, Lenihan, H. S. Corallivory varies with water depth to influence the growth of Acropora hyacinthus, a reef-forming coral. Ecosphere 12 e03623	Journal Article
2021	Leinbach, S. E.,, Speare, K. E.,, Rosen, A. M.,, Holstein, D. M., and, Strader, M. E. Energetic and reproductive costs of coral recovery in divergent bleaching responses. Scientific Reports 11 23546	Journal Article
2021	Messyasz, A.,, Maher, R. L.,, Meiling, S. S., and, Vega-Thurber, R. Nutrient enrichment predominantly affects low diversity microbiomes in a marine trophic symbiosis between algal farming fish and corals. Microrganisms 9 1873	Journal Article
2021	Munsterman, K. S.,, Allgeier, J. E.,, Peters, J. R., and, Burkepile, D. E. A view from both ends: shifts in herbivore assemblages impact top-down and bottom-up processes on coral reefs. Ecosystems 24 1702-1715	Journal Article
2021	Nassiri, A.,, Thebaud, O.,, Holbrook, S. J.,, Lauer, M.,, Rassweiler, A.,, Schmitt, R. J., and, Claudet, J. Hedonic evaluation of coral reef fish prices on a direct sale market. Marine Policy 129 104525	Journal Article
2021	Nozawa, Y.,, Villanueva, R. D.,, Munasik, M.,, Roeroe, K. A.,, Mezaki, T.,, Kawai, T.,, Guest, J.,, Arakaki, S.,, Suzuki, G.,, Tanangonan, J. J. B.,, Ang, P. O., and, Edmunds, P. J. Latitudinal variation in growth and survival of juvenile corals in the West and South Pacific. Coral Reefs 40 1463-1471	Journal Article
2021	Rice, M. M.,, Baldwin, D. G.,, Fischer, J. N.,, Fuchs, C., and, Burkepile, D. E. Complex interactions with nutrients and sediment alter the effects of predation on a reef-building coral.  Marine Ecology 42 e12670	Journal Article
2021	Walter, J. A.,, Shoemaker, L. G.,, Lany, N. K.,, Castorani, M. C. N.,, Fey, S. B.,, Dudney, J. C.,, Gherardi, L.,, Portales-Reyes, C.,, Rypel, A. L.,, Cottingham, K. L.,, Suding, K. N.,, Reuman, D. C., and, Hallett, L. M. The spatial synchrony of species richness and its relationship to ecosystem stability. Ecology 102 e03486	Journal Article
2020	Becker, D. M. The influence of nutrient and sediment loading on multiple facets of coral functionality in branching coral species. Department of Biology, CSU Northridge M.S. Thesis 99 Pp.	Thesis or Dissertation
2020	Burkepile, D. E., Shantz, A. A., Adam, T. C., Munsterman, K. S., Speare, K. E., Ladd, M. C., Rice, M. M., Ezzat, L., McIlroy, S. E., Wong, J. C. Y., Baker, D. M., Brooks, A. J., Schmitt, R. J., Holbrook, S. J. Nitrogen identity drives differential impacts of nutrients on coral bleaching and mortality. Ecosystems 23 798-811	Journal Article
2020	Cinner, J. E., Zamborain-Mason, J., Gurney, G. G., Graham, N. A. J., MacNeil, M. A., Hoey, A. S., Mora, C., Villeger, S., Maire, E., McClanahan, T. R., Maina, J. M., Kittinger, J. N., Hicks, C. C., D'agata, S., Huchery, C., Barnes, M. L., Feary, D. A., Williams, I. D., Kulbicki, M., Vigliola, L., Wantiez, L., Edgar, G. J., Stuart-Smith, R. D., Sandin, S. A., Green, A. L., Berger, M., Friedlander, A. M., Wilson, S. K., Brokovich, E., Brooks, A. J., Cruz-Motta, J. J., Booth, D. J., Chabanet, P., Tupper, M., Ferse, S. C. A., Sumaila, U. R., Hardt, M. J., Mouillot, D. Meeting fisheries, ecosystem function, and biodiversity goals in a human-dominated world. Science 368 (6488):307-311	Journal Article
2020	Donovan, M. K., Adam, T. C., Shantz, A. A., Speare, K. E., Munsterman, K. S., Rice, M. M., Schmitt, R. J., Holbrook, S. J., Burkepile, D. E. Nitrogen pollution interacts with heat stress to increase coral bleaching across the seascape. Proceedings of the National Academy of Sciences 117 (10):5351-5357	Journal Article
2020	Duvall, M. S., Rosman, J. H., Hench, J. L. Estimating geometric properties of coral reef topography using obstacle- and surface-based approaches. Journal of Geophysical Research: Oceans 125 (6):e2019JC015870	Journal Article
2020	Duvall, M. S. The interaction between multi-scale topography and flow in shallow-water coral reefs. NIcholas School of the Environment, Duke University Ph. D. Dissertation	Thesis or Dissertation
2020	Edmunds, P. J., Doo, S. S., Carpenter, R. C. Year-long effects of high pCO2 on the community structure of a tropical fore reef assembled in outdoor flumes. ICES Journal of Marine Science 77 (3):1055-1065	Journal Article
2020	Edmunds, P. J., Riegl, B. Urgent need for coral demography in a world where corals are disappearing. Marine Ecology Progress Series 635 233-242	Journal Article
2020	Edmunds, P. J., Putnam, H. M. Science-based approach to using growth rate to assess coral performance and restoration outcomes Biology Letters 16 20200227	Journal Article
2020	Edmunds, P. J., Burgess, S. C. Emergent properties of branching morphologies modulate the sensitivity of coral calcification to high PCO2. Journal of Experimental Biology 223 (8):jeb2170000	Journal Article
2020	Ezzat, L., Lamy, T., Maher, R. L., Munsterman, K. S., Landfield, K. M., Schmeltzer, E. R., Clements, C. S., Vega Thurber, R. L., Burkepile, D. E. Parrotfish predation drives distinct microbial communities in reef-building corals. Animal Microbiome 2 5	Journal Article
2020	Fong, C. R., Gaynus, C. J., Carpenter, R. C. Extreme rainfall events pulse nutrients and sediments from terrestrial nearshore coastal communities: a case study from French Polynesia. Scientific Reports 10 2955	Journal Article
2020	Fong, C. R., Gaynus, C. J., Carpenter, R. C. Complex interactions among stressors evolve over time to drive shifts from short turfs to macroalgae on tropical reefs. Ecosphere 11 (5):e03130	Journal Article
2020	Ginther, S. C.,, Edmunds, P. J.,, Doo, S. S.,, Carpenter, R.C. Prior exposure to elevated pCO2 does not affect calcification of a tropical scleractinian when returned to ambient pCO2. Journal of Experimental Marine Biology and Ecology 530-531 151401	Journal Article
2020	Gries, C.,, Beaulieu, S.,, Brown, R. F.,, Gastil-Buhl, G.,, Elmendorf, S.,, Hsieh, H.-Y.,, Kui, L.,, Maurer, G., and , Porter, J. H. Change in Pictures: Creating best practices in archiving ecological imagery for reuse.  Biodiversity Information Science and Standards 4 e59082	Conference Proceeding
2020	Hagedorn, K. B., Becker, D. M., Silbiger, N. J. Evidence of freshened groundwater below a tropical fringing reef. Hydrogeology Journal 28 2501-2517	Journal Article
2020	James, A. K., Washburn, L., Gotschalk, C. C., Maritorena, S., Alldredge, A. L., Nelson, C. E., Hench, J. L., Leichter, J. J., Wyatt, A. S. J., Carlson, C. A. An island mass effect resolved near Moorea, French Polynesia.  Frontiers in Marine Science 7 16	Journal Article
2020	Maher, R. L.,, Schmeltzer, E. R.,, Melling, S.,, McMinds, R.,, Ezzat, L.,, Shantz, A. A.,, Adam, T. C.,, Schmitt, R. J.,, Holbrook, S. J.,, Burkepile, D. E., and, Vega-Thurber, R. Coral microbiomes demonstrate flexibility and resilience through a reduction in community diversity following a thermal stress event. Frontiers in Ecology and Evolution 8 555698	Journal Article
2020	Messyasz, A.,, Rosales, S. M.,, Mueller, R. S.,, Sawyer, T.,, Correa, A. M, S.,, Thurber, A. R., and, Vega-Thurber, R. Coral bleaching phenotypes associated with differential abundances of nucleocytoplasmic large DNA viruses. Frontiers in Marine Science 7 555474	Journal Article
2020	Nocerino, E.,, Menna, F.,, Gruen, A.,, Troyer, M.,, Capra, A.,, Castagnetti, C.,, Rossi, P.,, Brooks, A. J.,, Schmitt, R. J., and, Holbrook, S. J. Coral reef monitoring by scuba divers using underwater photogrammetry and geodetic surveying. Remote Sensing 12 3036	Journal Article
2020	Pisapia, C.,, Stella, J.,, Silbiger, N. J., and, Carpenter, R. C. Epifaunal invertebrate assemblages associated with branching Pocilloporids in Moorea, French Polynesia. PeerJ 8 e9364	Journal Article
2020	Pisapia, C.,, Edmunds, P. J.,, Moeller, H. V.,, Riegl, B. M.,, McWilliam, M.,, Wells, C. D., and , Pratchett, M. S. Projected shifts in coral size structure in the Anthropocene. Advances in Marine Biology 87 32-60	Book Chapter
2020	Rassweiler, A., Lauer, M., Lester, S., Holbrook, S. J., Schmitt, R. J., Moussa, R. M., Munsterman, K., Lenihan, H. S., Brooks, A. J., Wencelius, J., Claudet, J. Perceptions and responses of Pacific Island fishers to changing coral reefs.  Ambio 49 130-143	Journal Article
2020	Rice, M. M., Maher, R. L., Correa, A. M. S., Burkepile, D. E., Moeller, H. V., Lemoine, N. P., Shantz, A. A., Silbiger, N. J. Macroborer presence on corals increases nutrient input and promotes parrotfish bioerosion. Coral Reefs 39 409-418	Journal Article
2020	Rossi, P., Castagnetti, C., Capra, A., Brooks, A. J., Mancini, F. Detecting change in coral reef 3D structure using underwater photogrammetry: critical issues and performance metrics. Applied Geomatics 12 3-17	Journal Article
2020	Srednik, G., Bergman, J. L., Doo, S. S., Hawthorn, M., Ferree, J., Rojas, R., Arias, R., Edmunds, P. J., Carpenter, R. C. Shallow coral reef free ocean carbon enrichment: Novel in situ flumes to manipulate pCO2 on shallow tropical coral reef communities. Limnology and Oceanography 18 (3):116-128	Journal Article
2020	Wyatt, A. S. J., Leichter, J. L., Toth, L. T., Miyajima, T., Aronson, R. B., Nagata, T. Heat accumulation on coral reefs mitigated by internal waves. Nature Geoscience 13 (1):28-34	Journal Article
2020	Zimmerman, S. A. The role of microhabitats and competition in coral reef community structure. Department of Biology, CSU Northridge M.S. Thesis 58 Pp	Thesis or Dissertation
2019	Briggs, A. A., Carpenter, R. C. Contrasting responses of photosynthesis and photochemical efficiency to ocean acidification under different light environments in a calcifying alga. Scientific Reports 9 3986	Journal Article
2019	Comeau, S., Cornwall, C. E., DeCarlo, T. M., Doo, S. S., Carpenter, R. C., McCulloch, M. T. Resistance to ocean acidification in coral reef taxa is not gained by acclimatization. Nature Climate Change 9 (6):477-483	Journal Article
2019	Doo, S. S., Edmunds, P. J., Carpenter, R. C. Ocean acidification effects on in situ coral reef metabolism. Scientific Reports 9 12067	Journal Article
2019	Duvall, M. S., Hench, J. L., Rosman, J. H. Collapsing complexity: metrics to quantify multi-scale properties of reef topography. Journal of Geophysical Research (Oceans)	Journal Article
2019	Edmunds, P. J., Nelson, H. R., Bramanti, L. Density-dependence mediates coral assemblage structure. Bulletin of the Ecological Society of America 100 (1):e01472	Journal Article
2019	Edmunds, P. J., Doo, S. S., Carpenter, R. C. Changes in coral reef community structure in response to year‑long incubations under contrasting pCO2 regimes. Marine Biology 166 (7):94	Journal Article
2019	Edmunds, P. J., Adam, T. C., Baker, A. C., Doo, S. S., Glynn, P. W., Manzello, D. P., Silbiger, N. J., Smith, T. B., Fong, P. Why more comparative approaches are required for time-series analyses of coral reef ecosystems. Marine Ecology Progress Series 608 297-306	Journal Article
2019	Edmunds, P. J. and, Weis, V. M. Ruth D. Gates (1962-2018). Nature Ecology and Evolution 3 10-11	Journal Article
2019	Ezzat, L.,, Lamy, T.,, Maher, R. L.,, Munsterman, K. S.,, Landfield, K.,, Schmeltzer, E. R.,, Gaulke, C. A.,, Burkepile, D. E.,, Vega-Thurber, R. Surgeonfish feces increase microbial opportunism in reef-building corals. Marine Ecology Progress Series 631 81-97	Journal Article
2019	Ingeman, K. E., Samhouri, J. F., Stier, A. C. Ocean recoveries for tomorrow’s Earth: Hitting a moving target. Science 363 (6425):eaav1004	Journal Article
2019	James, A. K., Wegley, K. L., Nelon, C. E., Wilbanks, E. G., Carlson, C. A. Elevated pCO2 alters marine heterotrophic bacterial community composition and metabolic potential in response to a pulse of phytoplankton organic matter.  Environmental Microbiology 21 (2):541-556	Journal Article
2019	Kamath, A, Pruitt, J. N., Brooks, A. J., Ladd, M. C., Cook, D. T., Gallagher, J. P., Vickers, M. E., Holbrook, S. J., Schmitt, R. J. Potential feedback between coral presence and farmerfish collective behavior promotes coral recovery. Oikos 128 (4):482-492	Journal Article
2019	Leray, M., Alldredge, A. L., Yang, J. Y., Meyer, C. P., Holbrook, S. J., Schmitt, R. J., Knowlton, N., Brooks, A. J. Dietary partitioning promotes the coexistence of planktivorous species on coral reefs. Molecular Ecology 28 (10):2694-2710	Journal Article
2019	Maher, R. L., Rice, M. M., McMinds, R., Burkepile, D. E., Vega-Thurber, R. Multiple stressors interact primarily through antagonism to drive changes in the coral microbiome. Scientific Reports 9 6834	Journal Article
2019	Manning, J. C., Carpenter, R. C., Miranda, E. A. Ocean acidification reduces net calcification and wound healing in the tropical crustose coralline alga, Porolithon onkodes (Corallinales, Rhodophyta). Journal of Experimental Marine Biology and Ecology 520 151225	Journal Article
2019	McConnell, K. M. Reef microbiomes of Moorea, French Polynesia, a socio-ecological island system. Department of Microbiology, Oregon State University M.Sc. Thesis 136 Pp	Thesis or Dissertation
2019	Munsterman, K. S. Size-mediated role of herbivorous fishes in ecosystem processes on coral reefs. Department of Ecology, Evolution and Marine Biology, University of California, Santa Barbara M.A. Thesis	Thesis or Dissertation
2019	Nocerino, E., Neyer, F., Gruen, A., Troyer, M., Menna, F., Brooks, A., Capra, A., Castagneti, C., Rossi, P. Comparison of diver-operated underwater photogrammetric systems for coral reef monitoring International Society for Photogrammetry and Remote Sensing The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences XLII-2/W10 143-150	Conference Proceeding
2019	Potter, A. Anthropogenic stressors and the impacts on scleractininan and non-scleractininan taxa. Department of Biology, CSU Northridge M. S. Thesis 82 Pp.	Thesis or Dissertation
2019	Price, N. N., Muko, S., Legendre, L., Steneck, R., van Oppen, M. J. H., Albright, R., Ang Jr, P., Carpenter, R. C., Chui, A. P. Y., Fan, T. -Y., Gates, R. D., Harii, S., Kitano, H., Kurihara, H., Mitarai, S., Padilla-Gamino, J. L., Sakai, K., Suzuki, G., Edmunds, P. J. Global biogeography of coral recruitment: tropical decline and subtropical increase Marine Ecology Progress Series 621 1-17	Journal Article
2019	Rice, M. M., Maher, R. L., Thurber, R. V., Burkepile, D. E. Different nitrogen sources speed recovery from corallivory and uniquely alter the microbiome of a reef-building coral. PeerJ 7 e8056	Journal Article
2019	Rice, M. M., Ezzat, L., Burkepile, D. E. Corallivory in the Anthropocene: Interactive anthropogenic stressors and corallivory on coral reefs. Frontiers in Marine Science 5 525	Journal Article
2019	Schmitt, R. J., Holbrook, S. J., Davis, S. L., Brooks, A. J., Adam, T. C. Experimental support for alternative attractors on coral reefs Proceedings of the National Academy of Sciences 116 (10):4372-4381	Journal Article
2019	Widrick, A. An ecophysiological investigation of the effects of macroalgae on juvenile corals and larvae on coral reefs in the Pacific and Caribbean. Department of Biology, CSU Northridge M.S. Thesis 75 Pp.	Thesis or Dissertation
2018	Allgeier, J. E., Speare, K. E., Burkepile, D. E. Estimates of fish and coral larvae as nutrient subsidies to coral reef ecosystems. Ecosphere 9 (6):e02216	Journal Article
2018	Bergman, J., Harii, S., Kurihara, H., Edmunds, P. J. Behavior of brooded coral larvae in response to ocean acidification. Frontiers in Marine Science 5 51	Journal Article
2018	Briggs, C. J., Adam, T. C., Holbrook, S. J., Schmitt, R. J. Macroalgae size refuge promotes alternative stable states on coral reefs. PLoS One 13 (9):e0202273	Journal Article
2018	Carpenter, R.C., Lantz, C. A., Shaw, E. C., Edmunds, P. J. Responses of coral reef community metabolism in flumes to ocean acidification. Marine Biology 165 (4):66	Journal Article
2018	Cinner, J.E., Maire, E., Huchery, C., MacNeil, M. A., Graham, N. A. J., Mora, C., McClanahan, T. R., Barnes, M. L., Kittinger, J. N., Hicks, C. C., D’Agata, S., Hoey, A., Gurney, G. G., Feary, D. A., Williams, I., Kulbicki, M., Vigliola, L., Wantiez, L., Edgar, G. J., Stuart-Smith, R. D., Sandin, S. A., Green, A., Hardt, M. J., Beger, M., Friedlander, A., Wilson, S. K., Brokovich, E., Brooks, A. J., Cruz-Motta, J. J., Booth, D. J., Chabanet, P., Gough, C., Tupper, M., Ferse, S. C. A., Sumaila, U. R., Pardede, S., Mouillot, D. The gravity of human impacts mediates coral reef conservation gains. Proceedings of the National Academy of Sciences 115 (27):E6116-E6125	Journal Article
2018	Colin, A., Ramambason, C., Pastol, Y., Casella, E., Rovere, A., Thiault, L., Espiau, B., Nakamura, N., Siu, G., Hench, J. L., Schmitt, R. J., Holbrook, S. J., Troyer, M., Davies, N. Very high resolution mapping of coral reef state using airborne bathymetric LiDAR surface-intensity and drone imagery. International Journal of Remote Sensing 39 (17):5676-5688	Journal Article
2018	Collin, A., Hench, J. L., Pastol, Y., Planes, S., Thiault, L., Schmitt, R. J., Holbrook, S. J., Davies, N., Troyer, M. High resolution topobathymetry using a Pleiades-1 triplet: Moorea Island in 3D. Remote Sensing of Environment 208 109-119	Journal Article
2018	Davis, S. L. Associational refuge facilitates phase shifts to macroalgae in a coral reef ecosystem. Ecosphere 9 (5):e02272	Journal Article
2018	Doo, S. S., Carpenter, R. C., Edmunds, P. J. Obligate ectosymbionts increase the physiological resilience of a scleractinian coral to high temperature an elevated pCO2. Coral Reefs 37 (4):997-1001	Journal Article
2018	Dornelas, M., Antao, L., Moyes, F., plus 195 others BioTIME: A database of biodiversity time series for the Anthropocene. Global Ecology and Biogeography 27 (7):760-786	Journal Article
2018	Edmunds, P. J., Burgess, S. C. Colony size and turbulent flow speed modulate the calcification response of the coral Pocillopora verrucosa to temperature. Marine Biology 165 (1):13	Journal Article
2018	Edmunds, P. J. Implications of high rates of sexual recruitment in driving rapid reef recovery in Moorea, French Polynesia. Scientific Reports 8 16615	Journal Article
2018	Edmunds, P. J., Nelson, H. R., Bramanti, L. Density-dependence mediates coral assemblage structure. Ecology 99 (11):2605-2613	Journal Article
2018	Edmunds, P. J., McIlroy, S. E., Adjeroud, M., Ang, P., Bergman, J. L., Carpenter, R. C., Coffroth, M. A., Fujimura, A., Hench, J., Holbrook, S. J., Leichter, J. J., Muko, S., Nakajima, Y., Nakamura, M., Paris, C. B., Schmitt, R. J., Sutthacheep, M., Toonen, R., Sakai, K., Suzuki, G., Washburn, L. Critical information gaps impeding understanding of the role of larval connectivity among coral reef islands in an era of global change. Frontiers in Marine Science 5 290	Journal Article
2018	Evensen, N. R., Edmunds, P. J. Effect of elevated pCO2 on competition between the scleractinian corals Galaxea fascicularis and Acropora hyacinthus. Journal of Experimental Marine Biology and Ecology 500 12-17	Journal Article
2018	Fujii, J. A., McLeish, D., Brooks, A. J., Gaskell, J., Van Houtan, K. S. Limb-use by foraging marine turtles, an evolutionary perspective. PeerJ 6 e4565	Journal Article
2018	Guest, J. R., Edmunds, P. J., Gates, R. D., Kuffner, I. B., Andersson, A. J., Barnes, B. B., Chollett, I., Elahi, R., Courtney, T. A., Gross, K., Lenz, E. A., Mitarai, S., Mumby, P. J., Nelson, H. R., Parker, B. A., Putnam, H. M., Rogers, C. S., Toth, L. T. A framework for identifying and characterizing coral-reef "oases" against a backdrop of degradation. Journal of Applied Ecology 55 (6):2865-2875	Journal Article
2018	Holbrook, S. J., Adam, T. C., Edmunds, P. J., Schmitt, R. J., Carpenter, R. C., Brooks, A. J., Lenihan, H. S., Briggs, C. J. Recruitment Drives Spatial Variation in Recovery Rates of Resilient Coral Reefs. Scientific Reports 8 7338	Journal Article
2018	Johnson, M. D., Carpenter, R. C. Nitrogen enrichment offsets direct negative effects of ocean acidification on a reef-building crustose coralline alga. Biology Letters 14 (7):20180371	Journal Article
2018	Kayal, M., Lenihan, H. S., Brooks, A. J., Holbrook, S. J., Schmitt, R. J., Kendall, B. E. Predicting coral community dynamics using multi-species population dynamics models. Ecology Letters 21 (12):1790-1799	Journal Article
2018	Neyer, F., Nocerino, E., Gruen, A. Monitoring coral growth - the dichotomy between underwater photogrammetry and geodetic control network The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences XLII-2 759-766	Conference Proceeding
2018	Pruitt, J. N., Keiser, C. N., Banka, B. T., Leidle, J. S., Brooks, A. J., Schmitt, R. J., Holbrook, S. J. Collective aggressiveness of an ecosystem engineer is associated with coral recovery. Behavioral Ecology 29 (6):1216-1224	Journal Article
2018	Rivest, E. B., Kelly, M. W., DeBiasse, M. B., Hofmann, G. E. Host and symbionts in Pocillopora damicornis larvae display different transcriptomic responses to ocean acidification and warming. Frontiers in Marine Science 5 186	Journal Article
2018	Safaie, A., Silbiger, N. J., McClanahan, T. R., Pawlak, G, Barshis, D. J., Hench, J. L., Rogers, J. S., Williams, G. J., Davis, K. A. High frequency temperature variability reduces the risk of coral bleaching. Nature Communications 9 1671	Journal Article
2018	Shayka, B. F. Effects of nutrient addition and ocean acidification on tropical crustose coralline algae. Department of Biology, CSU Northridge M.S. Thesis 97 Pp.	Thesis or Dissertation
2017	Allgeier, J. E., Burkepile, D. E., Layman, C. A. Animal pee in the sea: consumer-mediated nutrient dynamics in the world's changing oceans. Global Change Biology 23 (6):2166-2178	Journal Article
2017	Baghdasarian, G., Osberg, A., Mihora, D., Putnam, H. M., Gates, R. D., Edmunds, P. J. Effects of temperature and pCO2 on population regualtion of Symbiodinium spp. in a tropical reef coral. Biological Bulletin 232 123-139	Journal Article
2017	Bergman, J. L. Components of a flexible phenotype in two species of scleractinian coral under ocean acidification. Department of Biology, CSU Northridge M.S. Thesis 98 Pp.	Thesis or Dissertation
2017	Burgess, S. C., Ryan, W. H., Blackstone, N. W., Edmunds, P. J., Hoogenboom, M. O., Levitan, D. R., Wulff, J. L. Metabolic scaling in modular animals. Invertebrate Biology 136 (4):456-472	Journal Article
2017	Capra, A., Castagnetti, C., Dubbini, M., Gruen, A., Guo, T., Mancini, F. T., Neyer, F., Rossi, P., Troyer, M. Creating 3-dimensional (3D) models of underwater scenes has become a common approach for monitoring coral reef changes and its structural complexity (e.g., Burns et. al, 2015). Also in underwater archeology, 3D models are often created using underwater op IMEKO 3rd IMEKO International Conference on Metrology for Archeology and Cultural Heritage	Conference Proceeding
2017	Casella, E., Collin, A., Harris, D., Ferse, S. C. A., Bejarano, S., Parravicini, V., Hench, J. L., Rovere, A. Mapping coral reefs using consumer-grade drones and structure from motion photogrammetry techniques Coral Reefs 36 269-275	Journal Article
2017	Comeau, S., Edmunds, P. J., Lantz, C. A., Carpenter, R. C. Daily variation in net primary production and net calcification in coral reef communities exposed to elevated pCO2. BioGeosciences 14 (14):3549-3560	Journal Article
2017	Comeau, S., Carpenter, R. C., Edmunds, P. J. Effects of pCO2 on photosynthesis and respiration of tropical scleractinian corals and calcified algae ICES Journal of Marine Science 74 (4):1092-1102	Journal Article
2017	Comeau, S., Tambutte, E., Carpenter, R. C. , Edmunds, P. J., Evensen, N. R., Allemand, D., Ferrier-Pages, C. , Tambutte, S., A., Venn. A. Coral calcifying fluid pH is modulated by seawater carbon chemistry not solely seawater pH Proceedings of the Royal Society B - Biological Sciences 284 (1847):20161669	Journal Article
2017	Cunning, R., Muller, E. B., Gates, R. D., Nisbet, R. M. A dynamic bioenergetic model for coral-Symbiodinium symbioses and coral bleaching as an alternate stable state. Journal of Theoretical Biology 431 49-62	Journal Article
2017	Davis, K., Carlson, P. A., Bradley, D., Warner, R. R., Caselle, J. E. Predation risk influences feeding rates but competition structures space use for a common Pacific parrotfish Oecologia 184 (1):139-149	Journal Article
2017	Edmunds, P. J. Unusually high coral recruitment during the 2016 El Nino in Mo'orea, French Polynesia. PLoS One 12 (10):e0185167	Journal Article
2017	Edmunds, P. J.,, Yarid, A. The effects of ocean acidification on wound repair in the coral Porites spp Journal of Experimental Marine Biology and Ecology 486 98-104	Journal Article
2017	Evensen, N. R., Edmunds, P. J. Conspecific aggregations mitigate the effects of ocean acidification on calcification of the coral Pocillopora verrucosa Journal of Experimental Biology 220 1097-1105	Journal Article
2017	Fan, T. -Y., Hsieh, Y. -C., Lin, K. -H., Kuo, F. -W., Soong, K., McRae, C. J., Edmunds, P. J., Fang, L. -S. Plasticity in lunar timing of larval release of two brooding pocilloporid corals in an internal tide-induced upwelling reef.  Marine Ecology Progress Series 569 117-127	Journal Article
2017	Gil, M. A., Hein, A. M. Social interactions among grazing reef fish drive material flux in a coral reef ecosystem. Proceedings of the National Academy of Sciences 114 (18):4703-4708	Journal Article
2017	Gil, M. A., Zill, J., Ponciano, J. M. Context-dependent landscape of fear: algal density elicits risky herbivory in a coral reef. Ecology 98 (2):534-544	Journal Article
2017	Herdman, L. M. M., Hench, J. L., Fringer, O., Monismith, S. G. Behavior of a wave-driven buoyant surface jet on a coral reef. Journal of Geophysical Research-Oceans 122 (5):4088-4109	Journal Article
2017	Ho, M., Carpenter, R. C. Differential growth responses to water flow and reduced pH in tropical marine macroalgae. Journal of Experimental Marine Biology and Ecology 491 58-65	Journal Article
2017	James, A. K., Passow, U., Brzezinski, M. A., Parson, R. J., Trapani, J. N., Carlson, C. A. Elevated pCO2 enhances bacterioplankton removal of organic carbon. PLoS One 12 (3):e0173145	Journal Article
2017	Johnson, M. D., Comeau, S., Lantz, C. A., Smith, J. E. Complex and interactive effects of ocean acidification and temperature on epilithic and endolithic coral-reef turf algal assemblages. Coral Reefs 36 (4):1059-1070	Journal Article
2017	Johnston, E. C., Forsman, Z., Flot, J. F., Schmidt-Roach, S., Pinzon, J. H., Knapp, I. S. S., Toonen, R. J. A genomic glance through the fog of plasticity and diversification in Pocillopora. Scientific Reports 7 5991	Journal Article
2017	Lantz, C. A., Carpenter, R. C., Edmunds, P. J. Calcium carbonate (CaCO3) sediment dissolution under elevated concentrations of carbon dioxide (CO2) and nitrate (NO3-) Journal of Experimental Marine Biology and Ecology 495 48-56	Journal Article
2017	Lantz, C. A., Carpenter, R.C., Comeau, S., Edmunds, P. J. Organisms composing an experimenta coral reef community from Mo'orea, French Polynesia, exhibit taxon-specific net production: net calcification ratios. Frontiers in Marine Science 4 298	Journal Article
2017	Lenz, E.A. , P.J. Edmunds Branches and plates of the morphologically plastic coral Porites rus are insensitive to ocean acidification and warming Journal of Experimental Marine Biology and Ecology 486 188-194	Journal Article
2017	Longo, G. O., Hay, M. E. Seaweed allelopathy to corals: are active compounds on, or in, seaweeds? Coral Reefs 36 (1):247-253	Journal Article
2017	Madin, J. S., Anderson, K. D., Andreasen, M. H., Bridges, T. C. L., Cairns, S. D., Connolly, S. R., Darling, E. S., Diaz, M., Falster, D. S., Franklin, E. C., Gates, R. D., Harmer, A. M. T., Hoogenboom, M. O., Huang, D. W., Keith, S. A., Kosnik, M. A., Kuo, C. -Y., Lough, J. M., Lovelock, C. E., Luiz, O., Martinelli, J., Mizerek, T., Pandolfi, J. M., Pochon, X., Pratchett, M. S., Putnam, H. M., Roberts, T. E., Stat, M., Wallace, C., Widman, E., Baird, A. H. The Coral Trait Database, a curated database of trait information for coral species from the global oceans. Scientific Data 4 170174	Journal Article
2017	Manning, J. Effect of ocean acidification on the ecology of two tropical crustose coralline algae (phylum Rhodophyta). Department of Biology, CSU Northridge M.S. Thesis 92 Pp.	Thesis or Dissertation
2017	Merolla, S. Combined effects of ocean acidification with morphology, water flow, and algal acclimation on metabolic rates of tropical coralline algae. Department of Biology, CSU Northridge M.S. Thesis 118 Pp.	Thesis or Dissertation
2017	Putnam, H. M., Barott, K. L., Ainsworth, T. D., Gates, R. D. The vulnerability and resilience of reef building corals. Current Biology 27 (11):R528-R540	Journal Article
2017	Rivest, E. B., Chen, C. -S., Fan, T. -Y., Li, H. -H., Hofmann, G. E. Lipid consumption in coral larvae differs among sites: a consideration of environmental history in a global ocean change scenario. Proceedings of the Royal Society B - Biological Sciences 284 (1853):20162825	Journal Article
2017	Siu, G., Bacchet, P., Bernardi, G., Brooks, A. J., Carlot, J., Causse, R., Claudet, J., Clua, E., Delrieu-Trottin, E., Espiau, B., Hermelin-Vivien, M., Keith, P., Madi-Moussa, R., Parravicini, V., Planes, S., Ponsonnet, C., Randall, J. E., Sasal, P., Taquet, M., Williams, J. T., Galzin, R. Shore fishes of French Polynesia Cybium 41 (3):245-278	Journal Article
2017	Sogin, E. M., Putnam, H. M., Nelson, C. E., Anderson, P., Gates, R. D. Correspondence of coral holobiont metabolome with symbiotic bacteria, archaea and Symbiodinium communities. Environmental Microbiology Reports 9 (3):310-315	Journal Article
2017	Torda, G., Donelson, J. M., Aranda, M., Barshis, D. J., Bay, L., Berumen, M. L., Bourne, D. G., Cantin, N., Foret, S., Matz, M., Miller, D. J., Moya, A., Putnam, H. M., Vega-Thurber, R., Vidal-Dupiol, J., Voolstra, C. R., Watson, S., Whitelaw, E., Willis, B. L., Munday, P. L. Rapid adaptive responses to climate change in corals. Nature Climate Change 7 (9):627-636	Journal Article
2017	Van Oppen, M. J. H., Gates, R. D., Blackall, L. L., Cantin, N., Chakravarti, L. J., Chan, W. Y., Cormick, C., Crean, A., Damjanovic, K., Epstein, H., Harrison, P. L., Jones, T. A., Miller, M., Pears, R. J., Peplow, L. M., Raftos, D. A., Schaffelke, B., Stewart, K., Torda, G., Wachemfeld, D., Weeks, A. R., Putnam, H. M. Shifting paradigms in restoration of the world’s coral reefs. Global Channge Biology 23 3437-3448	Journal Article
2017	Vellend M., Dornelas M., Baeten L., Beauséjour R., Brown C.D., De Frenne P., Elmendorf S.C., Gotelli N.J., Moyes F. , Myers-Smith I.H. , Magurran A.E., McGill B.J., Shimadzu H., Sievers C. Estimates of local biodiversity change over time stand up to scrutiny Ecology 98 583-590	Journal Article
2016	Ainsworth, T. D., Gates, R. D. Corals' microbial sentinels Science 352 1518-1519	Journal Article
2016	Beijbom, O., Treibitz, T., Kline, D. I., Eyal, G., Khen, A., Neal, B. P., Loya, Y., Mitchell, B. G., Kriegman, D. Improving automated annotation of benthic survey images using wide-band fluorescence. Scientific Reports 6 23166	Journal Article
2016	Beldade, R., Holbrook, S.J., Schmitt, R.J., Planes, S., Bernardi, G. Spatial patterns of self-recruitment of a coral reef fish in relation to island-scale retention mechanisms Molecular Ecology  (25):5203-5211	Journal Article
2016	Bergman, J., Dang, B. N., Tabatabaee, M. M., McGowab, M. M., Fong, C. R., Bittick, S. J., Fong, P. Nutrients induce and herbivores maintain thallus toughness, a structural anti-herbivory defense in Turbinaria inornata. Marine Ecology Progress Series 559 35-43	Journal Article
2016	Bramanti, L., Edmunds, P. J. Density-associated recruitment mediates coral population dynamics on a coral reef. Coral Reefs	Journal Article
2016	Briggs, A. A. The effects of ocean acidification, temperature, and light on the physiology and ecology of tropical crustose coralline algae. Department of Biology, CSU Northridge M.S. Thesis 127 Pp.	Thesis or Dissertation
2016	Brown, D. J., Edmunds, P. J. Differences in the responses of three scleractinians and the hydrocoral Millepora platyphylla to ocean acidification Marine Biology	Journal Article
2016	Cinner, J. E., Huchery, C., MacNeil, M. A., Graham, N. A. J., McClanahan, T. R., Maina, J., Maire, E, Kittinger, J., Hicks, C. C., Mora, C., Allison, E., D’Agata, S., Hoey, A., Feary, D., Crowder, L., Williams, I., Kulbicki, M., Vigliola, L., Wantiez, L., Edgar, G., Stuart-Smith, R., Sandin, S. A., Green, A., Hardt, M., Beger, M., Friedlander, A., Campbell, S. J., Holmes, K. E., Wilson, S. K., Brokovich, E., Brooks, A. J., Cruz-Motta, J. J., Booth, D. J., Chabanet, P., Gough, C., Tupper, M., Ferse, S. C. A., Rashid Sumaila, U., Mouillot, D. Bright spots among the world’s coral reefs Nature 535 416-419	Journal Article
2016	Clausing, R. J., Fong, P. Environmental variability drives rapid and dramatic changes in nutrient limitation of tropical macroalgae with different ecological strategies. Coral Reefs	Journal Article
2016	Comeau, S., Carpenter, R. C., Lantz, C. A., Edmunds, P. J. Parameterization of the response of calcification to temperature and pCO2 in the coral Acropora pulchra and the alga Lithophyllum kotschyanum. Coral Reefs 35 929-939	Journal Article
2016	Davies, N., Field, D., Gavaghan, D., Holbrook, S. J., Planes, S., Troyer, M., Bonsall, M., Claudet, J., Roderick, G., Schmitt, R. J., Zettler, L. A., Berteaux, V., Bossin, H., Cabasse, C., Collin, A., Deck, J., Dell, T., Dunne, J., Gates, R. D., Harfoot, M., Hench, J. L., Hopuare, M., Kirch, P., Kotoulas, G., Kosenko, A., Leichter, J. J., Lenihan, H. S., Magoulas, A., Martinez, N., Meyer, C. P., Stoll, B., Swalla, B., Tartakovsky, D. M., Murphy, H. T., Turyshev, S., Valdvinos, F., Williams, R., Wood, S. Simulating social-ecological systems: the Island Digital Ecosytem Avatars (IDEA) consortium. Gigascience 5 (1):1-4	Journal Article
2016	Davis, S. L. Mechanisms underlying macroalgal phase shifts in coral reef ecosystems Department of Ecology, Evolution and Marine Biology, UC Santa Barbara PhD Dissertation 113 Pp	Thesis or Dissertation
2016	Didden, C., Edmunds, P. J. Experiential ecological investigations as a vehicle coupling teaching & research in high schools & universities American Biology Teacher 78 278-284	Journal Article
2016	Edmunds, P. J., Leichter, J. J., Johnston, E. C., Tong, E. J., Toonen, R. J. Ecological and genetic variation in reef-building corals on four Society Islands. Limnology and Oceanography	Journal Article
2016	Edmunds, P. J., Comeau, S., Lantz, C. A., Andersson, A., Briggs, C., Cohen, A., Gattuso, J.P., Grady, J. M., Gross, K., Johnson, M., Muller, E. B., Ries, J. B., Tambutté, S., Tambutté, E., Venn, A., Carpenter, R. C. Integrating the effects of ocean acidification across functional scales on tropical coral reefs. BioScience 66 350-362	Journal Article
2016	Edmunds, P. J. , Burgess, S. C. Size-dependent physiological responses of the branching coral Pocillopora verrucosa to elevated temperature and pCO2 Journal of Experimental Biology 219 3896-3906	Journal Article
2016	Edmunds, P. J., Leichter, J. J. Spatial scale-dependent vertical zonation of coral reef community structure in French Polynesia. Ecosphere 7 e01342	Journal Article
2016	Evensen, N. R., Edmunds, P. J. Interactive effects of ocean acidification and neighboring corals on the growth of Pocillopora verrucosa Marine Biology 163 148	Journal Article
2016	Guo, T., Capra, A., Troyer, M., Gruen, A, Brooks, A. J., Hench, J. L., Schmitt, R. J., Holbrook, S. J., Dubbini, M. Accuracy assessment of underwater photogrammetric three dimensional modelling for coral reefs Remote Sensing and Spatial Information Sciences XIII International Society for Photogrammetry and Remote Sensing Congress, Prague, Czech Republic	Conference Proceeding
2016	Han, X., Adam, T. C., Schmitt, R. J., Brooks, A. J., Holbrook, S. J. Response of herbivore functional groups to sequential perturbations in Moorea, French Polynesia. Coral Reefs 35 99-1009	Journal Article
2016	Hanson K.M., Schnarr E.L., Leichter J.J Non-random feeding enhances the contribution of oceanic zooplankton to the diet of the planktivorous coral reef fish Dascyllus flavicaudus Marine Biology 163	Journal Article
2016	Ho, M. Effects of ocean acidification and temperature on the physiology and ecology of two fleshy macroalgae that differ in their carbon acquisition strategy. Department of Biology, CSU Northridge M.S. Thesis 128 Pp.	Thesis or Dissertation
2016	Holbrook, S. J. Kelp forests, coral reefs and the LTER Program: Synergies and impacts on a scientific career. Oxford University Press Long-Term Environmental Research: Changing the Nature of Scientists. 27	Book Chapter
2016	Holbrook, S.J., R.J. Schmitt, T.C. Adam, A.J. Brooks Coral reef resilience, tipping points and the strength of herbivory Scientific Reports 6 35817	Journal Article
2016	Jacobson L.M., Edmunds P.J., Muller E.B., Nisbet R.M. The implications of reduced metabolic rate in resource-limited corals Journal Of Experimental Biology 219 870-877	Journal Article
2016	Knee, K. L., Crook, E. D., Hench, J. L., Leichter, J. J., Paytan, A. Assessment of submarine groundwater discharge (SGD) as a source of dissolved radium and nutrients to Moorea (French Polynesia) coastal waters Estuaries and Coasts	Journal Article
2016	Leenhardt P., Lauer M., Moussa R.M., Holbrook S.J., Rassweiler A., Schmitt R.J., Claudet J. Complexities and uncertainties in transitioning small-scale coral reef fisheries Frontiers in Marine Science 3	Journal Article
2016	Madin, J.S., Anderson K.D., Andreasen M.H., Bridges T.C.L., Cairns S.D., Connolly S.R., Darling E.S. , Diaz M., Falster D.S., Franklin E.C., Gates E.D., Hoogenboom M.O., Huang D., Keith S.A., Kosnik M.A., Kuo C.-Y., Lough J.M., Lovelock C.E., Luiz O., Matinelli J., Mizerek T. , Pandolfi J.M., Pochon X., Pratchett M.S., Putnam H.M., Roberts T.E., Stat M., Wallace C.C., Widman E., Baird A.H. The Coral Traits Database, a curated database of trait information for coral species from the global oceans Scientific Data 3	Journal Article
2016	Mor, C. Light and temperature control physiological responses of Halimeda to ocean acidification Department of Biology, CSU Northridge M.S. Thesis 124 Pp.	Thesis or Dissertation
2016	Nelson, H. R. From trees to octocorals: the role of phenotypic integration, shading, and self-thinning in underwater animal forests Department of Biology, CSU Northridge M.S. Thesis 97 Pp.	Thesis or Dissertation
2016	Putnam H.M., Davidson J., Gates R.D. Ocean acidification influences DNA methylation and phenotypic plasticity in environmentally susceptible corals Integrative and Comparative Biology  9	Journal Article
2016	Putnam H.M. , Davidson J., R.D. Gates Ocean acidification influences DNA methylation and phenotypic plasticity in environmentally susceptible corals Evolutionary Applications 9 1165-1178	Journal Article
2016	Quistad, S. D., Lim, Y. W., Silva, G. G. Z., Nelson, C. E., Haas, A. F., Wegley Kelly, L., Edwards, R. A., Rohwer, F. L. Using viromes to predict novel immune proteins in non-model organisms. Proceedings of the Royal Society B 283 (1837):20161200	Journal Article
2016	Rivest, E. B., O'Brian, M., Kapsenberg, L., Gotschalk, C. C., Blanchette, C. A., Hoshijima, U., Hofmann, G. E. Beyond the benchtop and the benthos: dataset management planning and design for time series of ocean carbonate chemistry associated with Durafet-based pH sensors Ecological Informatics 36 209-220	Journal Article
2016	Schmitt, R. J. The LTER construct for understanding dynamics of coral reef ecosystems and its influence on my science. Oxford University Press Long-Term Environmental Research: Changing the Nature of Scientists.	Book Chapter
2016	Shantz A.A., Lemoine N.P., Burkepile D.E. Nutrient loading alters the performance of key nutrient exchange mutualisms Ecology Letters 19 20-28	Journal Article
2016	Shaw, E.C, R.C. Carpenter, C.A. Lantz , P.J. Edmunds Intraspecific variability in the response to ocean warming and acidification in the scleractinian coral Acropora pulchra Marine Biology	Journal Article
2016	Smolenski, J. Physiological and ecological consequences of intraspecific color variation in scleractinian corals.  Department of Biology, CSU Northridge M.S. Thesis 112 Pp.	Thesis or Dissertation
2016	Sogin E.M., Putnam H.M., Anderson P.E., Gates R.D. Metabolomic signatures of increases in temperature and ocean acidification from the reef-building coral, Pocillopora damicornis Metabolomics 12	Journal Article
2016	Sternberg D.R., Nelson H.R., Edmunds P.J. Asexual budding and aggregated spatial distribution of fungiid corals from disturbed reefs in Moorea, French Polynesia Integrative and Comparative Biology	Journal Article
2016	Swanson, S. A. Echinoid herbivores and coral reef resilience Department of Ecology, Evolution and Marine Biology, UC Santa Barbara Ph.D. Dissertation 93 Pp.	Thesis or Dissertation
2016	Tootell J.S., Steele M.A. Distribution, behavior, and condition of herbivorous fishes on coral reefs track algal resources Oecologia 181 13-24	Journal Article
2016	Tsounis, G. , P.J. Edmunds The potential for self-seeding by the coral Pocillopora spp. In Moorea, French Polynesia PeerJ	Journal Article
2015	Andersson, A. J., Kline, D. I., Edmunds, P. J., Archer, S. D., Bednarsek, N., Carpenter, R. C., Chadsey, M., Goldstein, P., Grottoli, A. G., Hurst, T. P., King, A. L., Kubler, J. E., Kuffner, I. B., Mackey, K. R. M. , Menge, B. A., Paytan, A., Riebesell, U. , Schnetzer, A., Warner M. E. , Zimmerman, R. C. Understanding ocean acidification on organismal to ecological scales. Oceanography 28 (2):16-27	Journal Article
2015	Beijbom, O., Edmunds, P. J., Roelfsema, C., Smith, J., Kline, D. I., Neal, B. P., Dunlap, M. J., Moriarty, V., Fan, T. - Y., Tan, C. -J., Chan, S., Treibitz, T., Gamst, A., Mitchell, B. G., Kriegman, D. Towards automated annotation of benthic survey images: Variability of human experts and operational modes of automation. PLoS One 10 (7):e0130312	Journal Article
2015	Bramanti, L., Iannelli, M., Fan, T. - Y., Edmunds, P. J. Using demographic models to project the effects of climate change on scleractinian corals: Pocillopora damicornis as a case study Coral Reefs 34 505-515	Journal Article
2015	Brewin, R. J. W., Sathyendranath, S., Muller, D., Brockmann, C., Deschamps, P. Y., Devred, E., Doerffer, R., Fomferra, N., Franz, B., Grant, M., Groom, S., Horseman, A., Hu, C., Krasemann, H., Lee, Z., Maritorena, S., Meelin, F., Peters, M., Platt, T., Regner, P., Smyth, T., Steinmetz, F., Swinton, J., Werdell, J., White III, G. N. The ocean colour climate change initiative: III. A round-robin comparison on in-water bio-optical algorithms Remote Sensing of Environment 162 271-294	Journal Article
2015	Brown, A., Carpenter, R. C. Water flow influences the mechanisms and outcomes of interactions between massive Porites and coral reef algae. Marine Biology 162 459-468	Journal Article
2015	Carlson, C. A., Hansell, D. A. DOM sources, sinks, reactivity and budgets. Biochemistry of Marine Dissolved Organic Matter, 2nd edition 65-126	Book Chapter
2015	Carlson, C. A., Giovannoni, S.J. Introduction to the Annual Review Annual Review of Marine Science	Book Chapter
2015	Carlson, C. A., Giovannoni, S.J. Annual review of marine science 7 596	Book
2015	Comeau, S., Carpenter, R. C., Lantz, C. A., Edmunds, P. J. Ocean acidification accelerates dissolution of experimental coral reef communities. Biogeosciences 12 365-372	Journal Article
2015	Edmunds, P. J., Steneck, R., Albright, R., Carpenter, R. C., Chui, A. P. Y., Fan, T. -Y., Harii, S., Kitano, H., Kurihara, H., Legendre, L., Mitarai, S., Muko, S., Nozawa, Y., Padillo-Gamino, J., Price, N. N., Sakai, K., Suzuki, G., van Oppen, M. J. H., Yarid, A., Gates, R. D. Geographic variation in long-term trajectories of change in coral recruitment: a global-to-local perspective. Journal of Marine and Freshwater Research 66 (7):609-622	Journal Article
2015	Ellis, A. The impacts of temperature and other environmental factors on the early life stages of a scleractinian coral Department of Biology, CSU Northridge M.S. Thesis 83 Pp.	Thesis or Dissertation
2015	Evensen, N. R. The effects of ocean acidification on species interactions among scleractinian corals. Department of Biology, CSU Northridge M.S. Thesis 88 Pp.	Thesis or Dissertation
2015	Evensen, N. R., Edmunds, P. J., Sakai, K. Effects of pCO2 on spatial competition between the corals Montipora aequituberculata and Porites lutea. Marine Ecology Progress Series 541 123-134	Journal Article
2015	Forsman, Z., Wellington, G. M., Fox, G. E., Toonen, R. J. Clues to unraveling the coral species problem: distinguishing species from geographic variation in Porites across the Pacific with molecular markers and microskeletal traits. PeerJ 3 e751	Journal Article
2015	Gibbin, E. M., Putnam, H. M., Gates, R. D., Nitschke, M. R., Davy, S. K. Species-specific differences in thermal tolerance may define susceptibility to intracellular acidosis in reef corals. Marine Biology 162 (3):717-723	Journal Article
2015	Hansell, D. A., Carlson, C. A. London, England, U.K. Biogeochemistry of marine dissolved organic matter. Academic Press LTD-Elsevier Science LTD 693	Book
2015	Herdman, L. M. M., Hench, J. L., Monismith, S. G. Heat balances and thermally-driven lagoon-ocean exchanges on a tropical coral reef system (Moorea, French Polynesia). Journal of Geophysical Research: Oceans 120 1233-1252	Journal Article
2015	Hillard, H. The role of Sargassum pacificum in ocean acidification effects on corals. Department of Biology, CSU Northridge M.S. Thesis 142 Pp.	Thesis or Dissertation
2015	Holbrook, S. J., Schmitt, R. J., Messmer, V., Brooks, A. J., Srinivasan, M., Munday, P. L., Jones, G. P. Reef fishes in biodiversity hotspots are at greatest risk from loss of coral species. PLoS One 10 (5):e0124054	Journal Article
2015	Kearney, M. R., Domingos, T., Nisbet, R. M. Dynamic energy budget theory: An efficient and general theory for ecology. Biological Bulletin 65 (4):341-341	Journal Article
2015	Lenihan, H. S., Hench, J. L., Holbrook, S. J., Schmitt, R. J., Potoski, M. Hydrodynamics influence coral performance through simultaneous direct and indirect effects. Ecology 96 (6):1540-1549	Journal Article
2015	Pratchett, M. S., Anderson, K. D., Hoogenboom, M. O., Widman, E., Baird, A. H., Pandolfi, J. M., Edmunds, P. J., Lough, J. M. Spatial, temporal and taxonomic variation in coral growth-implications for the structure and function of coral reef ecosystems. Oceanography and Marine Biology: An Annual Review 53 215-295	Book Chapter
2015	Putnam, H. M., Gates, R. D. Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions. Journal of Experimental Biology 218 (15):2365-2372	Journal Article
2015	Rivest, E. B., Hofmann, G. E. Effects of temperature and pCO2 on lipid use and biological parameters of planulae of Pocillopora damicornis. Journal of Experimental Marine Biology and Ecology 473 43-52	Journal Article
2015	Rivest, E. B., Gouthier T. C. Complex environmental forcing across the biogeographical range of coral populations. PLoS One 10 (3):e0121742	Journal Article
2015	Roth, M. S., Padilla-Gamino, J. L., Pochon, X., Bidigare, R. R., Gates, R. D., Smith, C. M., Spalding, H. L. Fluorescent proteins in dominant mesophotic reef-building corals. Marine Ecology Progress Series 521 63-79	Journal Article
2015	Sogin, E. M. Development and application of metabolomics for reef-building corals. Department of Zoology, University of Hawai'i, Monoa Ph.D. Dissertation 141 Pp.	Thesis or Dissertation
2015	Treibitz, T., Neal, B. P., Kline, D. I., Beijbom, O., Roberts, P. L. D., Mitchell, B. G., Kriegman, D. Wide Field-of-View Fluorescence Imaging of Coral Reefs Scientific Reports 5 7694	Journal Article
2015	van Oppen, M. J. H., Oliver, J. K., Putnam, H. M., Gates, R. D. Building coral reef resilience through assisted evolution. Proceedings of the National Academy of Sciences 112 (8):2307-2313	Journal Article
2014	Adam, T. C., Brooks, A. J., Holbrook, S. J., Schmitt, R. J., Washburn, L., Bernardi, G. How will coral reef fish communities respond to climate-driven disturbances? Insight from landscape-scale perturbations. Oecologia 176 285-296	Journal Article
2014	Antoine, D., Babin , M., Berthon, J. F., Bricaud, A., Gentili, B., Loisel, H., Maritorena, S., Stramski, D. Shedding light on the sea: André Morel’s legacy to optical oceanography. Annual Review of Marine Science 6 1-21	Journal Article
2014	Beijbom, O., Saberian, M., Kriegman, D., Vasconcelos, N. Beijing, China Guess Averse Loss functions for cost-sensitive multiclass boosting. Journal of Machine Learning Research 31st International Conference on Machine Learning (ICML) 32 2014 9	Conference Proceeding
2014	Bowen, B. W., Shanker, K., Yasuda, N., Malay, M. C. D., von der Heyden, S., Paulay, G., Rocha, L. A., Selkoe, K. A., Barber, P H., Williams, S. T., Lessios, H. A., Crandall, E. D., Bernardi, G., Meyer, C. P., Carpenter, K. E., Toonen, R. J. Phylogeography unplugged: Comparative surveys in the genomic era. Bulletin of Marine Science 90 (1):13-46	Journal Article
2014	Byrne, M., Hofmann, G. E. Calcification in a changing ocean: Perspectives on a virtual symposium in the Biological Bulletin. Biological Bulletin 226 (3):167-168	Journal Article
2014	Cameron, C. M., Edmunds, P. J. Effects simulated fish predation on small colonies of massive Porites spp. and Pocillopora meandrina. Marine Ecology Progress Series 508 139-148	Journal Article
2014	Clausing, R. J., Annunziata, C., Baker, G., Lee, C., Bittick, S. J., Fong, P. Effects of sediment depth on algal turf height are mediated by interactions with fish herbivory on a fringing reef. Marine Ecology Progress Series 517 121-129	Journal Article
2014	Comeau, S., Carpenter, R. C., Nojiri, Y., Putnam, H. M., Sakai, K., Edmunds, P. J. Pacific-wide contrast highlights resistance of reef calcifiers to ocean acidification. Proceedings of the Royal Society B – Biological Sciences 281 20141339	Journal Article
2014	Comeau, S., Edmunds, P. J., Spindel, N. B., Carpenter, R. C. Fast coral reef calcifiers are more sensitive to ocean acidification in short-term laboratory incubations Limnology and Oceanography 59 (3):1081-1091	Journal Article
2014	Comeau, S., Edmunds, P. J., Lantz, C. A., Carpenter, R. C. Water flow modulates the response of coral reef communities to ocean acidification. Scientific Reports 4 6681	Journal Article
2014	Comeau, S., Edmunds, P. J., Spindel, N. B., Carpenter, R. C. Diel pCO2 oscillations modulate the response of the coral Acropora hyacinthus to ocean acidification. Marine Ecology Progress Series 501 99-111	Journal Article
2014	Comeau, S., Carpenter, R. C., Edmunds, P. J. Effects of irradiance on the response of the coral Acropora pulchra and the calcifying alga Hydrolithon reinboldii to temperature elevation and ocean acidification Journal of Experimental Marine Biology and Ecology 453 28-35	Journal Article
2014	Dornelas, M., Gotelli, N. J., McGill, B., Shimadzu, H., Moyes, F., Sievers, C., Magurran, A. E. Assemblage time series revel biodiversity change but not systematic loss. Science 344 296-299	Journal Article
2014	Edmunds, P. J. Large numbers of Acropora palmata grow in shallow water in St. John, US Virgin Islands. Bulletin of Marine Science 90 (4):999-1000	Journal Article
2014	Edmunds, P. J., Adjeroud, M. , Baskett, M. L., Baums, I. B., Budd, A. F., Carpenter, R. C., Fabina, N. S., Fan, T. - Y., Franklin, E. C., Gross, E. C., Han, X., Jacobson, L. M., Klaus, J. S., McClanahan, T. R., O’Leary, J. K., van Oppen, M. J. H., Pochon, X., Putnam, H. M., Smith, T. B., Stat, M. I., Sweatman, H., van Woesik, R., Gates, R. D. Persistence and change in community composition of reef corals through past, present, and future climates PLoS One 9 (10):e107525	Journal Article
2014	Edmunds, P. J. Landscape-scale variation in coral reef community structure in the United States Virgin Islands. Marine Ecology Progress Series 509 137-152	Journal Article
2014	Edmunds, P. J., Wall, C. B. Evidence that high pCO2 affects protein metabolism in tropical reef corals Marine Biology 227 (1):68-77	Journal Article
2014	Edmunds, P. J. Is acclimation beneficial to scleractinian corals, Porites spp.? Marine Biology 161 1531-1542	Journal Article
2014	Edmunds, P. J., Pochon, X., Levitan, D. R., Yost, D. M., Belcaid, M., Putnam, H. M., Gates, R. D. Long-term changes in Symbiodinium communities in Orbicella annularis in St. John, US Virgin Islands Marine Ecology Progress Series 506 129-144	Journal Article
2014	Edmunds, P. J., Gray, S. C. The effects of storms, heavy rain, and sedimentation on the shallow coral reefs of St. John, US Virgin Islands Hydrobiologia 734 (1):143-158	Journal Article
2014	Edmunds, P. J., Burgess, S. C., Putnam, H. M., Baskett, M. L., Bramanti, L., Fabina, N. S., Han, X., Lesser, M. P., Madin, J. S., Wall, C. B., Yost, D. M., Gates, R. D. Evaluating the causal basis of ecological success within the scleractinia: an integral projection model approach Marine Biology 161 (12):2719-2734	Journal Article
2014	Edmunds, P. J., Nozawa, Y., Villanueva, R. D. Refuges modulate coral recruitment in the Caribbean and the Pacific. Journal of Experimental Marine Biology and Ecology 454 78-84	Journal Article
2014	Gibbin, E. M., Putnam, H. M., Davy, S. K., Gates, R. D. Intracellular pH and its response to CO2-driven seawater acidification in symbiotic versus non-symbiotic coral cells. Journal of Experimental Biology 217 (11):1963-1969	Journal Article
2014	Gowan, J. C., Tootell, J. S., Carpenter, R. C. The effects of water flow and sedimentation on interactions between massive Porites and algal turf. Coral Reefs 33 (3):651-663	Journal Article
2014	Hillard, H., Carpenter, R. C. Acidification and algae: do they have interactive effects on corals? Society of Integrative and Comparative Biology Annual Meeting 54 2014 E91-E91	Conference Proceeding
2014	Johnson, M., Moriarty, V., Carpenter, R. C. Acclimatization of the crustose coraline alga Porolithon onkodes to variable pCO2. PLoS One 9 (2):e87678	Journal Article
2014	Kelly, L. W., Williams, G. J., Barott, K. L., Carlson, C. A., Dinsdale, E. A., Edwards, R. A., Haas, A. F., Haynes, M., Lim, Y. W., McDole, T., Nelson, C. E., Sala, E., Sandin, S. A., Smith, J. E., Vermeij, M. J. A., Youle, M., Rohwer, F. Local genomic adaption of coral and algal-associated microbiomes to gradients of natural variability and anthropogenic stressors. Proceedings of the National Academy of Sciences 111 (28):10227-10232	Journal Article
2014	Keyse, J., Crandall, E. D., Toonen, R. J., Meyer, C. P., Treml, E. A., Riginos, C. The scope of published population genetic data for Indo-Pacific marine fauna and future research opportunities in the region. Bulletin of Marine Science 90 (1):47-78	Journal Article
2014	Leichter, J. J., Stokes, M. D., Vilchis, L. I., Fiechter, J. Regional synchrony of tempertaure variation and internal wave forcing along the Florida Keys reef tract. Journal of Geophysical Research: Oceans 119 (1):548-558	Journal Article
2014	Lenz, E. A., Brown, D. B., Didden, C., Arnold, A., Edmunds, P. J. The distribution of hermit crabs and their gastropod shells on shallow reefs off St. John, US Virgin Islands Bulletin of Marine Science 90 (2):681-692	Journal Article
2014	Lenz, E. A. An ecological and physiological assessment of tropical coral reefs to past and predicted disturbances. Department of Biology, CSU Northridge M.S. Thesis 131 Pp.	Thesis or Dissertation
2014	Levitan, D. R., Edmunds, P. J., Levitan, K. E. What makes a species common? No evidence of density-dependent recruitment or mortality of the sea urchin Diadema antillarum after the 1983-1984 mass mortality. Oecologia 175 (1):117-128	Journal Article
2014	Marti-Puig, P., Forsman, Z. H., Haverkort-Yeh, R. D., Knapp, I. S. S., Maragos, J. E., Toonen, R. J. Extreme phenotypic polymorphism in the coral genus Pocillopora; micro-morphology corresponds to mitochondrial groups, while colony morphology does not Bulletin of Marine Science 90 (1):211-231	Journal Article
2014	Muller, E.B., Nisbet, R. M. Dynamic energy budget modeling reveals the potential of future growth and calcification for the coccolithophore Emiliania huxleyi in an acifified ocean. Global Change Biology 20 2031-2038	Journal Article
2014	Padilla-Gamino, J. L. Kupe and the corals - French/Paumoto electronic edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series (6):32	Book
2014	Padilla-Gamino, J. L. Kupe and the corals - English/Tahitian edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series (6):32	Book
2014	Padilla-Gamino, J. L. Kupe and the corals - English edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series (6):32	Book
2014	Padilla-Gamino, J. L. Kupe and the corals - French/Tahitian edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series (6):32	Book
2014	Padilla-Gamino, J. L. Kupe and the corals - English/Spanish edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series (6):32	Book
2014	Padilla-Gamino, J. L., Hedouin, L., Waller, R. G., Smith, D., Truong, W., Gates, R. D. Sedimentation and the reproductive biology of the Hawaiian reef-building coral Montipora capitata Biological Bulletin 226 8-18	Journal Article
2014	Padilla-Gamino, J. L. Kupe and the corals - English electronic edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series (6):32	Book
2014	Padilla-Gamino, J. L. Kupe and the corals - English/Hawaiian edition Taylor Trade Publishing NSF Long Term Ecological Research Network Children's Book Series (6):32	Book
2014	Payet, J. P., McMinds, R., Burkepile, D. E., Vega-Thurber, R. Unprecedented evidence for high viral abundance and lytic activity in coral reef waters of the South Pacific Ocean. Frontiers in Microbiology 5 493	Journal Article
2014	Pochon, X., Gates, R. D., Vik, D., Edmunds, P. J. Molecular characterization of symbiotic algae (Symbiodinium spp.) in soritid foraminifera (Sorites orbiculus) and a scleractinian coral (Orbicella annularis) from St John, US Virgin Islands Marine Biology 161 (10):2307-2318	Journal Article
2014	Pochon, X., Putnam, H. M., Gates, R. D. Multi-gene analysis of Symbiodinium dinoflagellates: a perspective on rarity, symbiosis, and evolution. PeerJ 2 e394	Journal Article
2014	Poray, A. K., Carpenter, R. C. Distributions of coral reef macroalgae in a back reef habitat in Moorea, French Polynesia Coral Reefs 33 (1):67-76	Journal Article
2014	Rivest, E. B., Hofmann, G. E. Responses of the metabolism of the larvae of Pocillopora damicornis to ocean acidification and warming. PLoS One 9 (4):e96172	Journal Article
2014	Rivest, E. B. The effects of elevated ocean acidity and temperature on the physiological integrity of the larvae of the cauliflower coral, Pocillopora damicornis. Department of Ecology, Evolution and Marine Biology, UC Santa Barbara Ph.D. Dissertation 313 Pp.	Thesis or Dissertation
2014	Sogin, E. M., Anderson, P., Williams, P., Chen, C. -S., Gates, R. D. Application of 1H-NMR metabolomic profiling for reef-building corals. PLoS One 9 (10):e111274	Journal Article
2014	Stier, A. C., Hanson, K. M., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Predation and landscape characteristics independently affect reef fish community organization. Ecology 95 (5):1294-1307	Journal Article
2014	Tootell, J. S., Steele, M. A. Vermetid gastropods reduce foraging by herbivorous fishes on algae on coral reefs. Coral Reefs 33 (4):1145-1151	Journal Article
2014	Valentino, L. M. The effects of ocean acidification on bioerosion in the back reef of Moorea, French Polynesia. Biology M.Sc.
2014	Valentino, L. M. The effects of ocean acidification on bioerosion in the back reef of Moorea, French Polynesia. Department of Biology, CSU Northridge M.S. Thesis 71 Pp.	Thesis or Dissertation
2014	von der Heyden, S., Beger, M., Toonen, R. J., van Herwerden, L., Juinio-Menez, M. A., Ravago-Gotanco, R., Fauvelot, C., Bernardi, G. The application of genetics to marine management and conservation: examples from the Indo-Pacific Bulletin of Marine Science 90 (1):123-158	Journal Article
2014	Wall, C. B., Fan, T. - Y., Edmunds, P. J. Ocean acidification has no effect on thermal bleaching in the coral Seriatopora caliendrum. Coral Reefs 33 (1):119-130	Journal Article
2014	Yau, A. J., Lenihan, H. S., Kendall, B. E. Fisheries management priorities vary with self-recruitment in sedentary marine populations. Ecological Applications 24 (6):1490-1504	Journal Article
2014	Zamudio, S. L. Impacts of temperature-induced maternal effects on larval phenotype, settlement, and post-settlement growth of brooding scleractinian corals. Department of Biology, CSU Northridge M.S. Thesis 94 Pp.	Thesis or Dissertation
2013	Alldredge, A.L., Holbrook, S. J., Schmitt, R. J., Brooks, A. J., Stewart, H. L. Skeletal growth of four scleractinian corals is not enhanced by in situ mesozooplankton enrichment. Marine Ecology-Progress Series 489 143-153	Journal Article
2013	Alldredge, A.L., Carlson, C. A., Carpenter, R.C. Sources of organic carbon to coral reef flats. Oceanography 26 (3):108-113	Journal Article
2013	Bramanti, L., Edmunds, P. J. San Francisco, CA Demographic models can forcast climate change effects on scleractinian corals: the Pocillopora damicornis case study. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 53 2013 E22-E22	Conference Proceeding
2013	Brown, A. L., Carpenter, R. C. Water-flow mediated oxygen dynamics within massive Porites-algal turf interactions. Marine Ecology Progress Series 490 1-10	Journal Article
2013	Brown, D. B., Edmunds, P. J. Long-term changes in the population dynamics of the Caribbean hydrocoral Millepora spp. Journal of Experimental Marine Biology and Ecology 441 62-70	Journal Article
2013	Brown, D. J. Effects of ocean acidification on the primary framework builders of coral reefs. Department of Biology, CSU Northridge M.S. Thesis 89 Pp	Thesis or Dissertation
2013	Carr, M. H., Malone, D. P., Hixon, M. A., Holbrook, S. J., Schmitt, R. J. How SCUBA changed our understanding of nature: underwater breakthroughs in reef fish ecology. Smithsonian Contributions to the Marine Sciences Research and Discoveries: The revolution of science through SCUBA. (39):157-167	Journal Article
2013	Comeau, S., Carpenter, R. C., Edmunds, P. J. Response to: Coral reef calcification: carbonate, bicarbonate and proton flux under conditions of increasing ocean acidification. Proceedings of the Royal Society B – Biological Sciences 280 20131153	Journal Article
2013	Comeau, S., Edmunds, P. J., Spindel, N. B., Carpenter, R. C. The responses of eight coral reef calcifiers to increasing partial pressure of CO2 do not exhibit a tipping point. Limnology and Oceanography 58 (1):388-398	Journal Article
2013	Comeau, S., Carpenter, R. C., Edmunds, P. J. Coral reef calcifiers buffer their response to ocean acidification using both bicarbonate and carbonate. Proceedings of the Royal Society B – Biological Sciences 280 (1753):20122374	Journal Article
2013	Comeau, S., Carpenter, R. C., Edmunds, P. J. Effects of feeding and light intensity on the response of the coral Porites rus to ocean acidification. Marine Biology 160 1127-1134	Journal Article
2013	Cumbo, V. R., Edmunds, P. J., Wall, C. B., Fan, T. - Y. Brooded coral larvae differ in their response to high temperature and elevated pCO2 depending on the day of release. Marine Biology 160 2903-2917	Journal Article
2013	Cumbo, V. R., Fan, T. -Y., Edmunds, P. J. Effects of exposure duration on the response of Pocillopora damicornis larvae to elevated temperature and high pCO2. Journal of Experimental Marine Biology and Ecology 439 100-107	Journal Article
2013	Dufault, A. M., Ninokawa, A., Bramanti, L., Cumbo, V. R., Fan, T. -Y., Edmunds, P. J. The role of light in mediating the effects of ocean acidification on coral calcification. Journal of Experimental Biology 216 1570-1577	Journal Article
2013	Dufault, A. M. The effects of ocean acidification on the physiology of coral recruits. Department of Biology, CSU Northridge M.S. Thesis 83 Pp.	Thesis or Dissertation
2013	Edmunds, P. J. , Cumbo, V. R., Fan, T. - Y. Metabolic costs of larval settlement and metamorphosis in the coral Seriatopora caliendrum under ambient and elevated pCO2. Journal of Experimental Marine Biology and Ecology 442 33-38	Journal Article
2013	Edmunds, P. J., Fan, T. - Y. San Francisco, CA Evidence that high pCO2 affects coral recruits through perturbed protein metabolism. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 53 2013 E60-E60	Conference Proceeding
2013	Edmunds, P. J., Carpenter, R. C., Comeau, S. Understanding the threats of ocean acidification to coral reefs. Oceanography 26 (3):149-152	Journal Article
2013	Edmunds, P. J. Decadal-scale changes in the community structure of coral reefs in St. John, U.S. Virgin Islands. Marine Ecology-Progress Series 489 107-123	Journal Article
2013	Fabina, N. S., Putnam, H. M., Franklin, E. C., Stat, M., Gates, R. D. Symbiotic specificity, association patterns, and function determine community responses to global changes: Defining critical research areas for coral-Symbiodinium symbioses. Global Change Biology 19 3306-3316	Journal Article
2013	Farrar, C. E., , Forsman, Z. H., Gates, R. D., Leong, J. A. C., Toonen, R. J. Observing the coral symbiome using laser scanning confocal microscopy. Science 339	Journal Article
2013	Forsman, Z., Johnston, E. C., Brooks, A. J., Adam, T. C., Toonen, R. J. Genetic evidence for regional isolation of Pocillopora corals from Moorea. Oceanography 26 (3):153-155	Journal Article
2013	Haas, A. F., Nelson, C. E., Rohwer, F., Wegley-Kelly, L., Quistad, S. D., Carlson, C. A., Leichter, J. J., Hatay, M., Smith, J. E. Influence of coral and algal exudates on microbially mediated reef metabolism. PeerJ 1 e108	Journal Article
2013	Han, X. Herbivore community dynamics and functional compositions in Moorea, French Polynesia. Department of Ecology, Evolution and Marine Biology, UC Santa Barbara Ph.D. Dissertation 130 Pp.	Thesis or Dissertation
2013	Hédouin, L., Gates, R. D. Assessing fertilization success of the coral Montipora capitata under copper exposure: does the night of spawning matter? Marine Pollution Bulletin 66 221-224	Journal Article
2013	Hench, J. L., Rosman, J. H. Observations of spatial flow patterns at the coral colony scale on a shallow reef flat. Journal of Geophysical Research: Oceans 118 1142-1156	Journal Article
2013	Hofmann, G. E., Blanchette, C. A., Rivest, E. B., Kapsenberg, L. Taking the pulse of marine ecosystems: The importance of coupling long-term physical and biological observations in the context of global change biology. Oceanography 26 (3):140-148	Journal Article
2013	Leichter, J. J., Alldredge, A. L., Bernardi, G., Brooks, A. J., Carlson, C. A., Carpenter, R. C., Edmunds, P. J., Fewings, M. R., Hanson, K. M., Hench, J. L., Holbrook, S. J., Nelson, C. E., Schmitt, R. J., Toonen, R. J., Washburn, L., Wyatt, A. S. J. Biological and physical interactions on a tropical island coral reef: Transport and retention processes on Moorea, French Polynesia. Oceanography 26 (3):52-63	Journal Article
2013	Lenz, E. A., Edmunds, P. J. San Francisco, CA Evidence that octocorals are increasing in population density in the Caribbean. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 53 2013 E317-E317	Conference Proceeding
2013	Lesser, M. P., Stat, M., Gates, R. D. The endosymbiotic dinoflagellates (Symbiodinium sp.) of corals are parasites and mutualists. Coral Reefs 32 603-611	Journal Article
2013	Mayfield, A. B., Fan, T. - Y., Chen, C. -S. Physiological acclimation to elevated temperature in a reef-building coral from an upwelling environment. Coral Reefs 32 909-921	Journal Article
2013	Monismith, S. G., Herdman, L. M. M., Ahmerkamp, S. H., Hench, J. L. Wave transformation and wave-driven flow across a steep coral reef. Journal of Physical Oceanography 43 1356-1379	Journal Article
2013	Nelson, C. E., Goldberg, S. J., Wegley Kelly, L., Haas, A. F., Smith, J. E., Rohwer, F., Carlson, C. A. Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages. ISME Journal 7 962-979	Journal Article
2013	Nielsen, J. A. Effects of density on behaviorally-mediated tradeoffs between growth and survivorship. Department of Ecology, Evolution and Marine Biology, UC Santa Barbara M.A. Thesis . 59 Pp.	Thesis or Dissertation
2013	Padilla-Gamino, J. L., Bidigare, R. R., Barshis, D. J., Alamaru, A., Hedouin, L., Hernandez-Pech, X., Kandel, F., Soon, S L., Roth, M. S., Rodrigues, L. J., Grottoli, A. G., Portocarrero, C., Wagenhauser, S. A., Buttler, F., Gates, R. D. Are all eggs created equal? A case study from the Hawaiian reef-building coral Montipora capitata. Coral Reefs 32 137-152	Journal Article
2013	Page, H. M., Brooks, A. J., Kulbicki, M., Galzin, R., Miller, R. J., Reed, D., Schmitt, R. J., Holbrook, S. J., Koenigs, C. Stable isotopes reveal trophic relationships and diet of consumers in temperate kelp forest and coral reef ecosystems. Oceanography 26 (3):180-189	Journal Article
2013	Putnam, H. M., Mayfield, A. B., Fan, T. - Y., Chen, C.-S., Gates, R. D. The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperatures and pCO2. Marine Biology 160 2157-2173	Journal Article
2013	Rivest, E. B., Chen, C. -S., Fan, T. -Y. , Li, H. -H., Edmunds, P. J., Hofmann, G. E. San Francisco, CA Energetic consequences of ocean acidification and warming for coral larvae. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 53 2013 E360-E360	Conference Proceeding
2013	Siegel, D. A., Behrenfeld, M. J., Maritorena, S., McClain, C. R., Antoine, D., Bailey, S. W., Bontempi, P. S., Boss, E. S., Dierssen, H. M., Doney, S. C., Eplee Jr., R. E., Evans, R. H., Feldman, G. C., Fields, E., Franz, B. A., Kuring, N. A., Mengelt, C., Nelson, N. B., Patt, F. S., Robinson, W. D., Sarmiento, J. L., Swan, C. M., Werdell, P. J., Westberry, T. K., Wilding, J. G., Yoder, J. A. Regional to global assessments of phytoplankton dynamics from the SeaWiFS mission. Remote Sensing of Environment 135 77-91	Journal Article
2013	Smith, J. E., Price, N. N., Nelson, C. E., Haas, A. F. Coupled changes in oxygen concentration and pH caused by metabolism of benthic coral reef organisms. Marine Biology 160 (9):2437-2447	Journal Article
2013	Stat, M., Pochon, X., Franklin, E. C. , Bruno, J. F., Casey, K. S., Selig, E. R., Gates, R. D. The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress. Ecology and Evolution 3 (5):1317-1329	Journal Article
2013	Stewart, H. L., Price, N. N., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Determinants of the onset and strength of mutualistic interactions between branching corals and associate crabs. Marine Ecology Progress Series 493 155-163	Journal Article
2013	Stier, A. C., Geange, S. W., Hanson, K. M., Bolker, B. M. Predator density and timing of arrival affect reef fish community assembly. Ecology 94 (5):1057-1068	Journal Article
2013	Thompson, A. R., Adam, T. C., Hultgren, K. M., Thacker, C. E. Ecology and evolution affect network structure in an intimate marine mutualism. The American Naturalist 82 (2):E58-E72	Journal Article
2013	Tootell, J. Processes affecting the grazing, distribution, behavior, and condition of herbivorous fishes on coral reefs. Department of Biology, CSU Northridge M.S. Thesis 112 Pp.	Thesis or Dissertation
2013	Treibitz, T., Neal, B. P., Kline, D. I., Beijbom, O., Roberts, P. L. D., Mitchell, B. G., Kriegman, D. San Diego, CA Wide field-of-view daytime fluorescence imaging of coral reefs. IEEE, 345 E 47TH ST, NEW YORK, NY 10017 USA Oceans '13 2013 1-5	Conference Proceeding
2013	Wall, C. B., Edmunds, P. J. San Francisco, CA Elevated pCO2 increases ammonium excretion in juvenile colonies of the scleractinian Seritopora caliendrum. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 53 2013 E389-E389	Conference Proceeding
2013	Wall, C. B., Edmunds, P. J. In situ effects of low pH and elevated HCO3- on juvenile massive Porites spp. in Moorea, French Polynesia Biological Bulletin 225 92-101	Journal Article
2013	Werdell, P.J., , Franz, B. A., Bailey, S. W., Feldman, G. C., Boss, E., Brando, V. E., Dowell, M., Hirata, T., Lavender, S. J., Lee, Z., Loisel, H. , Maritorena, S., Mélin, F., Moore, T. S., Smyth, T. J., Antoine, D., Devred, E., d’Andon, O. H. F., Mangin, A. Generalized ocean color inversion model for retrieving marine inherent optical properties. Applied Optics 52 (10):2019-2037	Journal Article
2013	Zamudio, S. L., Bramanti, L., Edmunds, P.J. San Francisco, CA Temperature-induced maternal effects on the phenotype of larvae released by the brooding coral Pocillopora damicornis. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 2013 E233-E233	Conference Proceeding
2012	Adam, T. C. Mutualistic cleaner fish initiate trait-mediated indirect interactions on coral reefs by influencing the behavior of coral predators. Journal of Animal Ecology 81 692-700	Journal Article
2012	Adam, T. C., Horii, S. S. Patterns of resource-use and competition for mutualistic partners between two species of obligate cleaner fish. Coral Reefs 31 1149-1154	Journal Article
2012	Beijbom, O., Edmunds, P.J., Kline, D. I., Mitchell, B. G., Kriegman, D. Providence, R.I. Automated annotation of coral reef survey images. IEEE Conferences IEEE Conference on Computer Vision and Pattern Recognition (CVPR) 2012 8	Conference Proceeding
2012	Beldade, R., Holbrook, S. J., Schmitt, R. J., Planes, S., Malone, D., Bernardi, G. Larger female fish contribute disproportionately more to self-replenishment. Proceedings of the Royal Society B – Biological Sciences 279 (1736):2116-2121	Journal Article
2012	Bergsma, G. S. Coral mutualists enhance fish abundance and diversity through a morphology-mediated facilitation cascade. Marine Ecology-Progress Series 451 151-161	Journal Article
2012	Bergsma, G. S. Epibiotic mutualists alter coral susceptibility and response to biotic disturbance through cascading trait-mediated indirect interactions. Coral Reefs 31 461-469	Journal Article
2012	Bernardi, G., Beldade, R., Holbrook, S. J., Schmitt, R. J. Full-sibs in cohorts of newly settled coral reef fishes. PLoS One 7 (9):e44953	Journal Article
2012	Brown, A. The influence of water flow on mechanisms underlying coral-algal interactions. Department of Biology, CSU Northridge M.S. Thesis 112 Pp.	Thesis or Dissertation
2012	Buenau, K. E., Price, N. N., Nisbet, R. M. Size dependence, facilitation, and microhabitats mediate space competition between coral and crustose coralline algae in a spatially explicit model. Ecological Modelling 237 (8):23-33	Journal Article
2012	Collin, A., Hench, J. L., Planes, S. Cairns, Australia A novel spaceborne proxy for mapping coral cover. James Cook University Proceedings of the 12th International Coral Reef Symposium. 2012 5	Conference Proceeding
2012	Collin, A., Hench, J. L. Towards deeper measurements of tropical reefscape structure using the WorldView-2 spaceborne sensor. Remote Sensing 4 1425-1447	Journal Article
2012	Colvard, N. B., Edmunds, P. J. Macroalgae on shallow tropical reefs reduce the availability of reflected light for use in coral photosynthesis.  Bulletin of Marine Science 88 (4):1019-1033	Journal Article
2012	Cumbo, V. R., Fan, T. - Y., Edmunds, P. J. Physiological development of brooded larvae from two pocilloporid corals in Taiwan. Marine Biology 159 2853-2866	Journal Article
2012	Cumbo, V. R., Edmunds, P. J., Fan, T. -Y. Scleractinian corals capture zooplankton within days of settlement and metamorphosis. Coral Reefs 31 1155	Journal Article
2012	Dufault, A. M., Cumbo, V. R., Fan, T. - Y., Edmunds, P. J. Effects of diurnally oscillating pCO2 on the calcification and survival of coral recruits. Proceedings of the Royal Society B – Biological Sciences 279 2951-2958	Journal Article
2012	Edmunds, P. J., Putnam, H. M., Gates, R. D. Photophysiological consequences of vertical stratification of Symbiodinium in tissue of the coral Porites lutea Biological Bulletin 223 226-235	Journal Article
2012	Edmunds, P.J., Brown, D. B., Moriarty, V. Interactive effects of ocean acidification and temperature on two scleractinian corals from Moorea, French Polynesia. Global Change Biology 18 2173-2183	Journal Article
2012	Edmunds, P.J. Effect of pCO2 on the growth, respiration, and photophysiology of massive Porites spp. in Moorea, French Polynesia. Marine Biology 159 2149-2160	Journal Article
2012	Fabina, N. S., Putnam, H. M., Franklin, E. C., Stat, M., Gates, R. D. Transmission mode predicts specificity and interaction patterns in coral-Symbiodinium networks. PLoS One 7 (9):e44970	Journal Article
2012	Franklin, E. C., Stat, M., Pochon, X., Putnam, H. M., Gates, R. D. GeoSymbio: A hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses. Molecular Ecology Resources 12 369-373	Journal Article
2012	Gowan, J. C., Tootell, J. S. The effects of water flow and sedimentation on interactions between massive Porites and algal turf. Biology M.S.	Journal Article
2012	Gowen, J. C. The effects of water flow and sedimentation on interactions between massive Porites and algal turf. Department of Biology, CSU Northridge M.S. Thesis 93 Pp.	Thesis or Dissertation
2012	Jaroensutasinee, K., Jaroensutasinee, M., Bainbridge, S., Fountain, T., Holbrook, S. J., Nekrasov, M. Cairns, Australia CREON-Integrating disparate sources of remote coral reef sensor data. James Cook University Proceedings of the 12th International Coral Reef Symposium. 2012 5	Conference Proceeding
2012	Johnson, M. D., Carpenter, R. C. Ocean acidification and warming decrease calcification in the crustose coralline alga Hydrolithon onkodes and increases susceptibility to grazing. Journal of Experimental Marine Biology and Ecology 434 94-101	Journal Article
2012	Krueger, T., Gates, R.D. Cultivating endosymbionts-host environmental mimics support the survival of Symbiodinium C15 ex hospite. Journal of Experimental Marine Biology and Ecology 413 169-176	Journal Article
2012	Leichter, J. J., Stokes, M. D., Hench, J. L., Witting, J. , Washburn, L. The island-scale internal wave climate of Moorea, French Polynesia. Journal of Geophysical Research: Oceans 117 C06008	Journal Article
2012	Mayfield, A. B., Chan, P. -H., Putnam, H. M., Chen, C.-S., Fan, T. -Y. The effects of a variable temperature regime on the physiology of the reef-building coral Seriatopora hystrix: results from a laboratory-based reciprocal transplant. Journal of Experimental Biology 215 4183-4195	Journal Article
2012	McCliment, E., Nelson, C., Carlson, C., Alldredge, A., Witting, J., Amaral-Zettler, L. An all-taxon microbial inventory of the Moorea coral reef ecosystem. ISME Journal 6 309-319	Journal Article
2012	Padilla-Gamino, J. L., Hanson, K. M., Stat, M., Gates, R. D. Phenotypic plasticity of the coral Porites rus: acclimatization responses to a turbid environment. Journal of Experimental Marine Biology and Ecology 434 71-80	Journal Article
2012	Padilla-Gamiño, J. L., Pochon, X., Bird, C., Concepcion, G. T., Gates, R. D. From parent to gamete: vertical transmission of Symbiodinium (Dinophyceae) ITS2 sequence assemblages in the reef building coral Montipora capitata. PLoS One 7 (6):e38440	Journal Article
2012	Pochon, X., Putnam, H. M., Burki, F., Gates, R. D. Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium. PLoS One 7 (1):e29816	Journal Article
2012	Putnam, H. M., Stat, M., Pochon, X., Gates, R. D. Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals. Proceedings of the Royal Society B – Biological Sciences 279 4352-4361	Journal Article
2012	Putnam, H. M. Resilience and acclimatization potential of reef corals under predicted climate change stressors. Department of Zoology, University of Hawai'i, Monoa Ph.D. Dissertation 144 Pp.	Thesis or Dissertation
2012	Siegel, D.A., , Antoine, D. , Behrenfeld, M. J., d’Andon, O. H. F., Fields, E., Franz, B. A., Goryl, P., Maritorena, S., McClain, C. R., Wang, M., Yoder, J. A. Global ocean phytoplankton. Bulletin of the American Meteorological Society State of the climate in 2011. 93 S107-S110	Book Chapter
2012	Stat, M., Baker, A. C., Bourne, D. G., Correa, A. M. S., Forsman, Z., Huggett, M. J., Pochon, X., Skillings, D., Toonen, R. J., van Oppen, M. J. H., Gates, R. D. Amsterdam, Netherlands Molecular delineation of species in the coral holobiont. Academic Press Advances in Marine Biology 63 1-65	Book Chapter
2012	Wall, C. B. The effects of ocean acidification and temperature on the physiology of juvenile scleractinian corals. Department of Biology, CSU Northridge M.S. Thesis 152 Pp.	Thesis or Dissertation
2012	Yau, A. J.-Y., Fan, T.- Y. Size-dependent photosynthetic performance in the giant clam Tridacna maxima, a mixotrophic marine bivalve. Marine Biology 159 65-75	Journal Article
2011	Adam, T.C., Schmitt, R. J., Holbrook, S. J., Brooks, A. J., Edmunds, P.J., Carpenter, R.C., Bernardi, G. Herbivory, connectivity and ecosystem resilience: response of a coral reef to a large-scale perturbation PLoS One 6 (8):e23717	Journal Article
2011	Adam, T. C. High quality habitat and facilitation ameliorate competitive effects of prior residents on new settlers. Oecologia 166 121-130	Journal Article
2011	Ananthasubramaniam, B., Nisbet, R. M., Morse, D., Doyle, F. J. Integrate-and-fire models of insolation-driven entrainment of broadcast spawning in corals. Theoretical Ecology 4 69-85	Journal Article
2011	Antoine, D., Siegel, D. A., Kostadinov, T., Maritorena, S., Nelson, N. B., Gentili, B., Vellucci, V., Guillocheau, N Variability in optical particle backscattering in contrasting bio-optical oceanic regimes. Limnology and Oceanography 56 (3):955-973	Journal Article
2011	Bergsma, G. S., Martinez, C. M. Mutualist-induced morphological changes enhance growth and survival of corals. Marine Biology 158 (10):2267-2277	Journal Article
2011	Bestelmeyer, B. T., Ellison, A. M., Fraser, W. R., Gorman, K. B., Holbrook, S. J., Laney, C. M., Ohman, M. O., Peters, D. P. C., Pillsbury, F. C., Rassweiler, A., Schmitt, R. J., Sharma, S. Analysis of abrupt transitions in ecological systems. Ecosphere 2 (12):129	Journal Article
2011	Buenau, K. E., Price, N. N., Nisbet, R. M. Local interactions drive size dependent space competition between coral and crustose coralline algae. Oikos 120 941-949	Journal Article
2011	Cameron, C. The effects of partial mortality on corals in St. John, U.S. Virgin Islands and Moorea, French Polynesia. Department of Biology, CSU Northridge M.S. Thesis 127 Pp.	Thesis or Dissertation
2011	Colvard, N., Edmunds, P. J. Decadal-scale changes in abundance of non-scleractinian invertebrates on a Caribbean coral reef. Journal of Experimental Marine Biology and Ecology 397 153-160	Journal Article
2011	Edmunds, P.J., Cumbo, V, Fan, T.-Y. Effects of temperature on the respiration of brooded larvae from tropical reef corals. Journal of Experimental Biology 214 WOS:000293167300023 2783-2790	Journal Article
2011	Edmunds, P. J., Ross, C. L. M., Didden, C. High, but localized recruitment of Montastraea annularis complex in St. John, United States Virgin Islands. Coral Reefs 30 123-130	Journal Article
2011	Edmunds, P. J. Zooplanktivory ameliorates the effects of ocean acidification on the reef coral Porites spp. Limnology and Oceanography 56 (6):2402-2410	Journal Article
2011	Edmunds, P. J., Putnam, H. M., Nisbet, R. M., Muller, E.B. Benchmarks in organism performance and their use in comparative analyses. Oecologia 167 (2):379-390	Journal Article
2011	Eynaud, Y., Nisbet, R. M., Muller, E.B. Impact of excess and harmful radiation on energy budgets in sceractinian corals. Ecological Modelling 222 1315-1322	Journal Article
2011	Franklin, E. C., Stat, M., Pochon, X., Putnam, H. M., Gates, R. D. Santa Barbara Rapid development of a hybrid web application for synthesis science of Symbiodinium with Google Apps. University of California Environmental Information Management Conference 2011 44-48	Conference Proceeding
2011	Gates, R. D., Ainsworth, T. D. The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals. Journal of Experimental Marine Biology and Ecology 408 94-101	Journal Article
2011	Goldenheim, W. M., Edmunds, P. Effects of flow and temperature on growth and photophysiology of scleractinian corals in Moorea, French Polynesia Biological Bulletin 221 (3):270-279	Journal Article
2011	Green, D. H., Edmunds, P. J. Spatio-temporal variability of coral recruitment on shallow reefs in St John, US Virgin Islands. Journal of Experimental Marine Biology and Ecology 397 220-229	Journal Article
2011	Haas, A. F., Nelson, C. E., Wegley-Kelly, L., Carlson, C. A., Rohwer, F., Leichter, J. J., Wyatt, A., Smith, J. E. Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity. PLoS One 6 (11):e27973	Journal Article
2011	Hanson, K. Planktivorous fish link coral reef and oceanic food webs: causes and consequences of landscape-level patterns in fish behavior, diet and growth. Scripps Institute of Oceanography, UC San Diego Ph.D. Dissertation 248 Pp.	Thesis or Dissertation
2011	Hofmann, G. E., Smith, J. E., Johnson, K. S., Send, U, Levin, L.A., Micheli, F., Paytan, A., Price, N. N., Peterson, B., Takeshita, Y., Matson, P. G., Crook, E. D., Kroeker, K. J., Gambi, M. C., Rivest, E. B., Frieder, C. A., Yu, P. C., Martz, T.R. High-frequency dynamics of ocean pH: a multi-ecosystem comparison. PLoS One 6 (12):e28983	Journal Article
2011	Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Indirect effects of species interactions on habitat provisioning. Oecologia 166 739-749	Journal Article
2011	Jacobson, L. M. Coral energetics: the metaboloic response to resource scarcity and subsequent cost of recovery. Department of Biology, CSU Northridge M.S. Thesis 81 Pp.	Thesis or Dissertation
2011	Jaroensutasinee, M., Jaroensutasinee, K., Fountain, T., Nekrasov, M., Chumkiew, S., Noonsang, P. , Kuhapong, U., Bainbridge, S. Santa Barbara Coral sensor network at Racha Island, Thailand. University of California Environmental Information Management Conference 2011 82-86	Conference Proceeding
2011	Johnson, M. E. K., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Fish communities on staghorn coral: effects of habitat characteristics and resident farmerfishes. Environmental Biology of Fishes 91 429-448	Journal Article
2011	Johnson, M. The effects of ocean acidification, elevated temperature and herbivory on tropical crustose coralline algae. Department of Biology, CSU Northridge M.S. Thesis 127 Pp.	Thesis or Dissertation
2011	Kayal, M., Lenihan, H. S., Pau, C., Penin, L., Adjeroud, M. Associational refuges among corals mediate impacts of a crown-of-thorns starfish Acanthaster planci outbreak. Coral Reefs 30 WOS:000293536600035 (3):827-837	Journal Article
2011	Lenihan, H. S., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Influence of corallivory, competition, and habitat structure on coral community shifts. Ecology 92 (10):1959-1971	Journal Article
2011	Mayfield, A. B., Wang, L.H.., Tang, P.-C., Fan, T.- Y., Hsiao, Y.-Y., Tsai, C.-L., Chen, C.-S. Assessing the impacts of experimentally elevated temperature on the biological composition and molecular chaperone gene expression of a reef coral. PLoS One 6 (10):e26529	Journal Article
2011	Melack, J. M., Finzi, A. C., Siegal, D., MacIntyre, S., Nelson, C. E., Aufdenkampe, A. K., Pace, M. L. Improving biogeochemical knowledge through technical innovation. Frontiers in Ecology and the Environment 9 (1):37-43	Journal Article
2011	Messmer, V., Jones, G. P., Munday, P. L., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Habitat biodiversity as a determinant of fish community structure on coral reefs. Ecology 92 (12):2285-2298	Journal Article
2011	Mora, C., Aburto-Oropeza, O., Bocas, A. A., Ayotte, P. M., Banks, S., Bauman, A. G., Berger, M., Bessudo, S., Booth, D. J., Brokovich, E., Brooks, A. J., Chabanet, P., Cinner, J., Cortes, J., Cruz-Motta, J. J., Magana, A. C., DeMartini, E., Edgar, G. J., Feary, D. A., Ferse, S. C. A., Friedlander, A., Gaston, K. J., Gough, C., Graham, N. A. J., Green, A., Guzman, H., Kulbicki, M., Letourneur, Y., Perez, A. L., Loreau, M., Loya, Y., Martinez, C., Mascarenas-Osorio, I., Morove, T., Nadon, M.-O., Nakamura, Y., Paredes, G., Polunin, N., Pratchett, M. S., Bonilla, H. R., Rivera, F., Sala, E., Sandin, S., Soler, G., Stuart-Smith, R., Tessier, E., Tittensor, D. P., Tupper, M., Usseglio, P., Vigliola, L., Wantiez, L., Williams, I., Wilson, S.K., Zapata, F. A. Global human footprint on the linkage between biodiversity and ecosystem functioning in reef fishes. PLoS Biology 9 (4):e1000606	Journal Article
2011	Muller, E.B. Synthesizing units as modeling tool for photosynthesizing organisms with photoinhibition and nutrient limitation. Ecological Modelling 222 637-644	Journal Article
2011	Nelson, C. E., Alldredge, A.L., McCliment, E. A., Amaral-Zettler, L. A., Carlson, C. A. Depleted dissolved organic carbon and distinct bacterial communities in the water column of a rapid-flushing coral reef ecosystem. ISME Journal 5 (8):1374-1387	Journal Article
2011	Padilla-Gamiño, J. L., Weatherby, T. M., Waller, R. G., Gates, R. D. Formation and structural organization of the egg-sperm bundle of the scleractinian coral Montipora capitata. Coral Reefs 30 371-380	Journal Article
2011	Padilla-Gamiño, J. L. Spawning dynamics and parental effects in the Hawaiian scleractinian coral Montipora capitata. Department of Zoology, University of Hawai'i, Monoa Ph.D. Dissertation 242 Pp.	Thesis or Dissertation
2011	Putnam, H. M., Edmunds, P. J. The physiological response of reef corals to diel fluctuations in seawater temperature. Journal of Experimental Marine Biology and Ecology 396 216-223	Journal Article
2011	Rosman, J.H., Hench, J.L. A framework for understanding drag parameterizations for coral reefs Journal of Geophysical Research 116	Journal Article
2011	Salerno, J. L., Reineman, D. R., Gates, R. D., Rappé, M. S. The effect of a sublethal temperature elevation on the structure of bacterial communities associated with the coral Porites compressa. Journal of Marine Biology 2011 969173	Journal Article
2011	Siegel, D. A., Behrenfeld, M. J., Maritorena, S., O’Malley, R. T. , Fields, E., Blunden, J., Arndt, D. S., Baringer, M. O. Global ocean phytoplankton. Bulletin of the American Meteorological Society State of the climate in 2010 92 2011 S105-S108	Book Chapter
2011	Stat, M., Bird, C. E., Pochon, X., Chasqui, L., Chauka, L. J., Concepcion, G. T., Logan, D., Takabayashi, M., Gates, R. D. Variation in Symbiodinium ITS2 sequence assemblages among coral colonies.  PLoS One 6 (1):e15854	Journal Article
2011	Stat, M., Gates, R. D. Clade D Symbiodinium in scleractinian corals: a “nugget” of hope, a selfish opportunist, an ominous sign, or all of the above?  Journal of Marine Biology 2011 730715	Journal Article
2011	Swanson, S. Species-specific effects of echinoids on coral reef benthic community structure in Moorea, French Polynesia. Department of Biology, CSU Northridge M.S. Thesis 87 Pp.	Thesis or Dissertation
2011	Yau, A. J.-Y. Size-Based Approaches to Modeling and Managing Local Populations: A Case Study Using an Artisanal Fishery for Giant Clams, Tridacna maxima. Donald Bren School of Environmental Science and Management, UC Santa Barbara Ph.D. Dissertation Ph.D. 138 Pp.	Thesis or Dissertation
2010	Adam, T. C. Competition encourages cooperation: client fish receive higher quality service when cleaner fish compete Animal Behaviour 79 (6):1183-1189	Journal Article
2010	Adam, T. C. Cooperation in a cleaner fish mutualism and its ecological implications Department of Ecology, Evolution and Marine Biology, UC Santa Barbara Ph.D. Dissertation 125 Pp.	Thesis or Dissertation
2010	Ainsworth, T. D., Thurber, R. V., Gates, R. D. The future of coral reefs - A microbial perspective Trends in Ecology and Evolution 25 (4):233-240	Journal Article
2010	Barshis, D. J., Stillman, J. H., Gates, R. D., Toonen, R. J., Smith, L. W., Birkeland, C. Protein expression and genetic structure of the coral Porites lobata in an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity Molecular Ecology 19 (8):1705-1720	Journal Article
2010	Baskett, M. L., Nisbet, R. M., Kappel, C. V., Mumby, P. J., Gaines, S. D. Conservation management approaches to protecting the capacity for corals to respond to climate change: a theoretical comparison Global Change Biology 16 1229-1246	Journal Article
2010	Brainard, R. E., Bainbridge, S., Brinkman, R., Eakin, C. M., Field, M., Gattuso, J. -P., Gledhill, D., Gramer, L., Green, A., Hendee, J., Hoeke, R. K., Holbrook, S. J., Hoegh-Guldberg, O., Lammers, M., Manzello, D., McManus, M., Moffitt, R., Monaco, M., Morgan, J., Obura, D., Planes, S., Schmitt, R. J., Steinberg, C., Sweatman, H., Vetter, O. J., Wilkinson, C., Wong, K. B. Venice, Italy An international network of coral reef ecosystem observing systems (I-CREOS) European Space Agency Special Publication Proceedings of OceanObs’09: Sustained Ocean Observations and Information for Society 2	Book Chapter
2010	Colvard, N. B., Edmunds, P. J. Seattle, WA The physiological response of tropical reef corals to light reflected from the benthos. Oxford University Press Society of Integrative and Comparative Biology Annual Meeting 50 2010 (Supplement 1):e33	Conference Proceeding
2010	Colvard, N. Description of the light microenvironment on tropical reefs and its influence on coral physiology. Department of Biology, CSU Northridge M.S. Thesis 112 Pp.	Thesis or Dissertation
2010	Edmunds, P. J., Leichter, J. J., Adjeroud, M. Landscape-scale variation in coral recruitment in Moorea, French Polynesia. Marine Ecology-Progress Series 414 75-89	Journal Article
2010	Edmunds, P. J. Population biology of Porites astreoides and Diploria strigosa on a shallow Caribbean reef. Marine Ecology-Progress Series 418 87-104	Journal Article
2010	Edmunds, P. J., Lenihan, H. S. Effect of sub-lethal damage to juvenile colonies of massive Porites spp. under contrasting regimes of temperature and water flow Marine Biology 157 (4):887-897	Journal Article
2010	Green, D. H., Edmunds, P. J., Pochon, X., Gates, R. D. The effects of substratum type on the growth, mortality, and phytophysiology of juvenile corals in St. John, US Virgin Islands Journal of Experimental Marine Biology and Ecology 384 (1-2):18-29	Journal Article
2010	Hench, J. L., Rosman, J. H. Analysis of bottom-track and compass error in a self-contained acoustic Doppler diver navigation console. Journal of Atmospheric and Oceanic Technology 27 (7):1229-1238	Journal Article
2010	Hofmann, G. E., Barry, J. P., Edmunds, P. J., Gates, R. D., Hutchins, D. A., Klinger, T., Sewell, M. A. The effect of ocean acidification on calcifying organisms in marine ecosystems: an organism to ecosystem perspective. Annual Review of Ecology, Evolution and Systematics 41 127-147	Journal Article
2010	Hofmann, G. E., Todgham, A. E. Living in the now: Physiological mechanisms to tolerate a rapidly changing environment. Annual Review of Physiology 72 127-145	Journal Article
2010	Jacobson, L.M., Edmunds, P. J. Long-term changes in the concentration of zooplankton and particulate material over a fringing reef in St. John, US Virgin Islands. Bulletin of Marine Science 86 (3):763-772	Journal Article
2010	Johnson, M. E. K. Influence of staghorn coral on associated fish communities Department of Ecology, Evolution and Marine Biology, UC Santa Barbara M.A. Thesis 44 Pp.	Thesis or Dissertation
2010	Kostadinov, T. S. , Siegel, D. A., Maritorena, S. Global variability of phytoplankton functional types from space assessment via the particle size distribution. Biogeosciences 7 3239-3257	Journal Article
2010	Lenihan, H. S., Edmunds, P. J. Response of Pocillopora verrucosa to corallivory varies with environmental conditions Marine Ecology-Progress Series 409 51-63	Journal Article
2010	Leray, M., Beldade, R., Holbrook, S. J., Schmitt, R. J., Planes, S., Bernardi, G. Allopatric divergence and speciation in coral reef fish: the three-spot dascyllus, Dascyllus trimaculatus, species complex. Evolution 64 (5):1218-1230	Journal Article
2010	Lesser, M. P., Slattery, M., Stat, M., Ojimi, M., Gates, R. D., Grottoli, A. Photoacclimatization by the coral Montastraea cavernosa in the mesophotic zone: light, food, and genetics Ecology 91 (4):990-1003	Journal Article
2010	Maritorena, S., d’Andon, O. H. F., Mangin, A., Siegel, D. A. Merged satellite ocean color data products using a bio-optical model: characteristics, benefits and issues. Remote Sensing of Environment 114 (8):1791-1804	Journal Article
2010	Mayfield, A. B., Hsiao, Y.-Y., Fan, T.-Y., Chen, C.-S., Gates, R. D. Evaluating the temporal stability of stress-activated protein kinase and cytoskeleton gene expression in the Pacific reef corals Pocillopora damicornis and Seritopora hystrix. Journal of Experimental Marine Biology and Ecology 395 215-222	Journal Article
2010	Palmer, C. V., Gates, R. D. Skeletal Eroding Band in Hawaiian corals Coral Reefs 29 (2):469-469	Journal Article
2010	Pochon, X. P., Gates, R.D. A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i Molecular Phylogenetics and Evolution 56 (1):492-497	Journal Article
2010	Pochon, X., Stat, M., Takabayashi, M., Chasqui, L., Chauka, L. J., Logan, D. D. K., Gates, R. D. Comparison of endosymbiotic and free-living Symbiodinium (Dinophyceae) diversity in a Hawaiian reef environment Journal of Phycology 46 53-65	Journal Article
2010	Price, N. N. Habitat selection, facilitation, and biotic settlement cues affect distribution and performance of coral recruits in French Polynesia Oecologia 163 747-758	Journal Article
2010	Putnam, H. M., Edmunds, P. J., Fan, T.-Y. Effect of a fluctuating thermal regime on adult and larval reef corals Invertebrate Biology 129 (3):199-209	Journal Article
2010	Thacker, C. E., Thompson, A. R., Adam, T. C., Chen, J. Phylogeny and character evolution in the Indo-Pacific genus Ctenogobiops (Gobiiformes:Gobiidae) Icthyological Research 57 231-239	Journal Article
2010	Weersing, K., Padilla-Gamino, J. L., Bruno, B. What microbe are you? The Science Teacher 77 (6):40-44	Journal Article
2010	Wilson, S. K., Adjeroud, M., Bellwood, D. R., Berumen, M. L., Booth, D., Bozec, Y.-M., Chabanet, P., Cheal, A., Cinner, J., Depczynski, M., Feary, D. A., Gagliano, M., Graham, N. A. J., Halford, A. R., Halpern, B. S., Harborne, A. R., Hoey, A. S., Holbrook, S. J., Jones, G. P., Kulbicki, M., Letourneur, Y., De Loma, T. L., McClanahan, T., McCormick, M. I., Meekan, M. G., Mumby, P. J., Munday, P. L., Ohman, M. C., Pratchett, M. S., Riegl, B., Sano, M., Schmitt, R. J., Syms, C. Crucial knowledge gaps in current understanding of climate change impacts on coral reef fishes Journal of Experimental Biology 213 (6):894-900	Journal Article
2010	Yancey, P. H., Heppenstall, M., Ly, S., Andrell, R. M., Gates, R. D., Carter, V.L., Hagedorn, M. Betaines and dimethylsulfoniopropionate as major osmolytes in Cnidaria with endosymbiotic dinoflagellates Physiological and Biochemical Zoology 83 (1):167-173	Journal Article
2009	Adjeroud, M., Michonneau, F., Edmunds, P. J., Chancerelle, Y., de Loma, T. L., Penin, L., Thibaut, L., Vidal-Dupiol, J., Salvat, B., Galzin, R. Recurrent disturbances, recovery trajectories, and resilience of coral assemblages on a South Central Pacific reef Coral Reefs 28 (3):775-780	Journal Article
2009	Alldredge, A.L., King, J. M. Near-surface enrichment of zooplankton over a shallow back reef: Implications for coral reef food webs Coral Reefs 28 895-908	Journal Article
2009	Baskett, M. L., Gaines, S. D., Nisbet, R. M. Symbiont diversity may help coral reefs survive moderate climate change Ecological Applications 19 (1):3-17	Journal Article
2009	Beldade, R., Holbrook, S. J., Schmitt, R. J., Planes, S., Bernardi, G. Isolation and characterization of eight polymorphic microsatellite markers from the orange-fin anemonefish, Amphiprion chrysopterus Conservation Genetics Resources 1 (1):333-335	Journal Article
2009	Bergsma, G. S. Tube-dwelling coral symbionts induce significant morphological change in Montipora. Symbiosis 49 (3):143-150	Journal Article
2009	Bergsma, G. S. Ecological effects of finger-forming coral symbionts Department of Ecology, Evolution and Marine Biology, UC Santa Barbara Ph.D. Dissertation 132 Pp.	Thesis or Dissertation
2009	Buenau, K. E. The shifting landscapes of competition: Modeling the roles of space, size, and facilitation in marine benthic communities Department of Ecology, Evolution and Marine Biology, UC Santa Barbara Ph.D. Dissertation 111 Pp.	Thesis or Dissertation
2009	Chan, Y. L., Pochon, X., Fisher, M. A., Wagner, D., Concepcion, G. T., Kahng, S., Toonen, R. J., Gates, R. D. Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris BMC Ecology 9   21	Journal Article
2009	Edmunds, P. J. Effect of acclimatization to low temperature and reduced light on the response of reef corals to elevated temperature Marine Biology 156 (9):1797-1808	Journal Article
2009	Ferrier, G. A., Carpenter, R. C. Subtidal benthic heterogeneity: flow environment modification and impacts on marine algal community structure and morphology Biological Bulletin 217 (2):115-129	Journal Article
2009	Fitt, W. K., Gates, R. D., Hoegh-Guldberg, O., Bythell, J. C., Jatkar, A., Grottoli, A. G., Gomez, M., Fisher, P., Lajuenesse, T. C., Pantos, O., Iglesias-Prieto, R., Franklin, D. J., Rodrigues, L. J., Torregiani, J. M., van Woesik, R., Lesser, M. P. Response of two species of Indo-Pacific corals, Porites cylindrica and Stylophora pistillata, to short-term thermal stress: The host does matter in determining the tolerance of corals to bleaching Journal of Experimental Marine Biology and Ecology 373 (2):102-110	Journal Article
2009	Fountain, T., Tilak, S., Shin, P., Holbrook, S. J., Schmitt, R. J., Brooks, A. J., Washburn, L., Salazar, D. Melbourne, Australia Digital Moorea cyberinfrastructure for coral reef monitoring IEEE Conferences Proceedings of the Fifth International Conference on Intelligent Sensors, Sensor Networks and Information Processing 2009 243-248	Conference Proceeding
2009	Goldenheim, W. M. The effects of flow and temperature over multiple time scales on scleractinian growth and photo-physiology in Moorea, French Polynesia Department of Biology, CSU Northridge M.S. Thesis 88 Pp.	Thesis or Dissertation
2009	Hedouin, L., Reichelt-Brushett, A. J., Gates, R. D. Assessment of metals and a metalloid in sediments from Hawaiian coral reef ecosystems. Marine Pollution Bulletin 58   1759-1765	Journal Article
2009	Kane, C. N., Brooks, A. J., Holbrook, S. J., Schmitt, R. J. The role of microhabitat preference and social organization in determining the spatial distribution of a coral reef fish Environmental Biology of Fishes 84 (1):1-10	Journal Article
2009	Leray, M., Beldade, R., Holbrook, S. J., Schmitt, R. J., Planes, S., Bernardi, G. Isolation and characterization of 13 polymorphic nuclear microsatellite primers for the widespread Indo-Pacific three-spot damselfish, Dascyllus trimaculatus, and closely related D. auripinnis Molecular Ecology Resources 9 (1):213-215	Journal Article
2009	Mayfield, A. B., Hirst, M. B., Gates, R. D. Gene expression normalization in a dual-compartment system: a real-time quantitative polymerase chain reaction protocol for symbiotic anthozoans Molecular Ecology Resources 9 (2):462-470	Journal Article
2009	Muehllehner, N., Edmunds, P. J. Ft Lauderdale, FL Effects of ocean acidification and increased temperature on skeletal growth of two scleractinian corals, Pocillopora meandrina and Porites rus Nova Southeastern University Proceedings of the 11th International Coral Reef Symposium 2009 57-61	Conference Proceeding
2009	Muller, E. B., Doyle, F. J., Nisbet, R. M., Edmunds, P., Kooijman, S. Glascow, Scotland, U.K. Dynamic energy budgets of syntrophic symbiotic relationships between heterotrophic hosts and photoautotrophic symbionts Annual Meeting of the Society of Experimental Biology 153(2):Supplement S145-S145	Conference Proceeding
2009	Muller, E. B., Kooijman, S. A. L. M., Edmunds, P. J., Doyle, F. J., Nisbet, R. M. Dynamic energy budgets in syntrophic symbiotic relationships between heterotrophic hosts and photoautotrophic symbionts Journal of Theoretical Biology 259 (1):44-57	Journal Article
2009	Olson, N. D., Ainsworth, T. D., Gates, R. D., Takabayashi, M. Diazotrophic bacteria associated with Hawaiian Montipora corals: Diversity and abundance in correlation with symbiotic dinoflagellates Journal of Experimental Marine Biology and Ecology 371 (2):140-146	Journal Article
2009	Palmer, C. V., Roth, M. S., Gates, R. D. Red Fluorescent Protein Responsible for Pigmentation in Trematode-Infected Porites compressa Tissues Biological Bulletin 216 (1):68-74	Journal Article
2009	Poray, A. K. Spatial escape at a physiological cost: consequences for coral reef macroalgae inhabiting refugia from herbivores. Department of Biology, CSU Northridge M.S. Thesis 106 Pp.	Thesis or Dissertation
2009	Putnam, H. M., Edmunds, P. J. Responses of coral hosts and their algal symbionts to thermal heterogeneity Proceedings of the 11th International Coral Reef Symposium 393-397	Conference Proceeding
2009	Schmitt, R. J., Holbrook, S. J., Brooks, A. J., Lape, J. C. P. Intraguild predation in a structured habitat: distinguishing multiple-predator effects from competitor effects Ecology 90 (9):2434-2443	Journal Article
2009	Spitler, M. I. Factors influencing the distribution and abundance of the dominant macroalgal species on coral reefs in Moorea, French Polynesia. Department of Biology, CSU Northridge M.S. Thesis 82 Pp.	Thesis or Dissertation
2009	Stat, M., Pochon, X., Cowie, R. O. M., Gates, R. D. Specificity in communities of Symbiodinium in corals from Johnston Atoll Marine Ecology-Progress Series 386  ISI:000268552500007 83-96	Journal Article
2009	Stier, A. C., Steele, M. A., Brooks, A. J. Coral reef fishes use crown-of-thorns seastar as habitat Coral Reefs 28  ISI:000263071800029 (1):227-227	Journal Article
2009	Van Oppen, M. J. H., Leong, J. A., Gates, R. D. Coral-virus interactions: A double-edged sword? Symbiosis 47  ISI:000264431200001 (1):1-8	Journal Article
2008	Edmunds, P. J., Gates, R. D. Acclimatization in tropical reef corals Marine Ecology-Progress Series 361  ISI:000257413800028 307-310	Journal Article
2008	Edmunds, P. J. Differential effects of high temperature on the respiration of juvenile caribbean corals Bulletin of Marine Science 83  ISI:000260894200002 (3):453-464	Journal Article
2008	Edmunds, P. J. The effects of temperature on the growth of juvenile scleractinian corals Marine Biology 154  ISI:000254260800013 (1):153-162	Journal Article
2008	Green, D. H., Edmunds, P. J., Carpenter, R. C. Increasing relative abundance of Porites astreoides on Caribbean reefs mediated by an overall decline in coral cover Marine Ecology-Progress Series 359  ISI:000256338000001 1-10	Journal Article
2008	Hench, J. L., Leichter, J. J., Monismith, S. G. Episodic circulation and exchange in a wave-driven coral reef and lagoon system Limnology and Oceanography 53  ISI:000261355500029 (6):2681-2694	Journal Article
2008	Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Resistance and resilience of a coral reef fish community to changes in coral cover Marine Ecology-Progress Series 371  ISI:000261797800025 263-271	Journal Article
2008	Holbrook, S. J., Brooks, A. J., Schmitt, R. J., Stewart, H. L. Effects of sheltering fish on growth of their host corals Marine Biology 155 (5):521-530	Journal Article
2008	Lenihan, H. S., Adjeroud, M., Kotchen, M. J., Hench, J. L., Nakamura, T. Reef structure regulates small-scale spatial variation in coral bleaching Marine Ecology-Progress Series 370  ISI:000261229600011 127-141	Journal Article
2008	Lison de Loma, T., Osenberg, C. W., Shima, J. S., Chancerelle, Y., Davies, N., Brooks, A. J., Galzin, R. A framework for assessing impacts of marine protected areas in Moorea (French Polynesia) Pacific Science 62 ISI:000256127600015 431-441	Journal Article
2008	Manning, M. M., Gates, R. D. Diversity in populations of free-living Symbiodinium from a Caribbean and Pacific reef Limnology and Oceanography 53  ISI:000259356000013 (5):1853-1861	Journal Article
2008	Morrow, K., Carpenter, R. Shallow kelp canopies mediate macroalgal composition: effects on the distribution and abundance of Corynactis californica (Corallimorpharia) Marine Ecology-Progress Series 361 119-127	Journal Article
2008	Morrow, K. M., Carpenter, R. C. Macroalgal morphology mediates particle capture by the corallimorpharian Corynactis californica Marine Biology 155  ISI:000258576500003 (3):273-280	Journal Article
2008	Muehllehner, N. Growth and morphology in Acropora under increasing carbon dioxide and the effect of increased temperature and carbon dioxide on the photosynthesis and growth of Porites rus and Pocillopora meandrina Department of Biology, CSU Northridge M.S. Thesis 102 Pp.	Thesis or Dissertation
2008	Price, N. N. Structuring processes for benthic communities: Habitat selection, facilitation, and competition on a coral reef Department of Ecology, Evolution and Marine Biology, UC Santa Barbara Ph.D. Dissertation Ph.D. 117 Pp.	Thesis or Dissertation
2008	Putnam, H. M., Edmunds, P. J., Fan, T.- Y. Effect of temperature on the settlement choice and photophysiology of larvae from the reef coral Stylophora pistillata Biological Bulletin 215  ISI:000260049800003 (2):135-142	Journal Article
2008	Putnam, H. M. The effects of temperature fluctuations on coral physiology. Department of Biology, CSU Northridge M.S. Thesis 115 Pp.	Thesis or Dissertation
2008	Rosman, J. H., Hench, J. L., Koseff, J. R., Monismith, S. G. Extracting Reynolds stresses from acoustic Doppler current profiler measurements in wave-dominated environments Journal of Atmospheric and Oceanic Technology 25  ISI:000253582700010 (2):286-306	Journal Article
2008	Skoog, A., Alldredge, A., Passow, U., Dunne, J., Murray, J. Neutral aldoses as source indicators for marine snow Marine Chemistry 108  ISI:000253332400006 (3-4):195-206	Journal Article
2008	Stat, M., Gates, R. D. Vectored introductions of marine endosymbiotic dinoflagellates into Hawaii Biological Invasions 10  ISI:000254086900018 (4):579-583	Journal Article
2008	Stat, M., Morris, E., Gates, R. D. Functional diversity in coral-dinoflagellate symbiosis Proceedings of the National Academy of Sciences of the United States of America 105  ISI:000257645400024 (27):9256-9261	Journal Article
2007	Apprill, A. M., Bidigare, R. R., Gates, R. D. Visibly healthy corals exhibit variable pigment concentrations and symbiont phenotypes Coral Reefs 26  ISI:000247307100022 (2):387-397	Journal Article
2007	Apprill, A. M., Gates, R. D. Recognizing diversity in coral symbiotic dinoflagellate communities Molecular Ecology 16  ISI:000244602500002 (6):1127-1134	Journal Article
2007	Brooks, A. J., Holbrook, S. J., Schmitt, R. J. Patterns of microhabitat use by fishes in the patch-forming coral Porites rus Raffles Bulletin of Zoology (Supplement) 14 245-254	Journal Article
2007	Buenau, K. E., Rassweiler, A., Nisbet, R. M. The effects of landscape structure on space competition and alternative stable states Ecology 88  ISI:000251965200008 (12):3022-3031	Journal Article
2007	Carpenter, R. C., Williams, S. L. Mass transfer limitation of photosynthesis of coral reef algal turfs Marine Biology 151  ISI:000245125400004 (2):435-450	Journal Article
2007	Edmunds, P. J. Evidence for a decadal-scale decline in the growth rates of juvenile scleractinian corals Marine Ecology-Progress Series 341  ISI:000248392300001 1-13	Journal Article
2007	Elahi, R., Edmunds, P. J. Determinate growth and the scaling of photosynthetic energy intake in the solitary coral Fungia concinna (Verrill) Journal of Experimental Marine Biology and Ecology 349  ISI:000249264600016 (1):183-193	Journal Article
2007	Haring, R. N., Carpenter, R. C. Habitat-induced morphological variation influences photosynthesis and drag on the marine macroalga Pachydictyon coriaceum Marine Biology 151  ISI:000244485800022 (1):243-255	Journal Article
2007	Hoegh-Guldberg, O., Muller-Parker, G., Cook, C. B., Gates, R. D., Gladfelter, E., Trench, R. K., Weis, V. M. Len Muscatine (1932-2007) and his contributions to the understanding of algal-invertebrate endosymbiosis Coral Reefs 26  ISI:000251579300001 (4):731-739	Journal Article
2007	Holbrook, S. J., Schmitt, R. J., Brooks, A. J., Margalith, T., Burnsed, J., Seydel, K., Masui, H. Tokyo The use of LED light lures to enhance larval settlement of coral reef fish Technical Information Institute Co. Ltd. State of the Art: High Power LED Application Practices 326-338	Book Chapter
2007	Leggat, W., Ainsworth, T., Bythell, J., Dove, S., Gates, R., Hoegh-Guldberg, O., Iglesias-Prieto, R., Yellowlees, D. The hologenome theory disregards the coral holobiont Nature Reviews Microbiology 5  ISI:000249525500028	Journal Article
2007	Leichter, J. J., Denny, M. W., Gaines, S. D. Berkeley, CA Internal waves University of California Encyclopedia of Tidepools and Rocky Shores 637-639	Book Chapter
2007	Lesser, M. P., Bythell, J. C., Gates, R. D., Johnstone, R. W., Hoegh-Guldberg, O. Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data Journal of Experimental Marine Biology and Ecology 346  ISI:000247155600005 (1-2):36-44	Journal Article
2007	Maheigan, M. E. Spatial scale of morphological variation of the corals Pocillopora verrucosa and Porites porites. Department of Biology, CSU Northridge M.S. Thesis 85 Pp.	Thesis or Dissertation
2007	Mayfield, A. B., Gates, R. D. Osmoregulation in anthozoan-dinoflagellate symbiosis Comparative Biochemistry and Physiology a-Molecular & Integrative Physiology 147  ISI:000245995700001 (1):1-10	Journal Article
2007	Ohlmann, C., White, P., Washburn, L., Terrill, E., Emery, B., Otero, M. Interpretation of coastal HF radar-derived surface currents with high-resolution drifter data Journal of Atmospheric and Oceanic Technology 24  ISI:000245742900010 (4):666-680	Journal Article
2007	Padilla-Gamiño, J. L., Carpenter, R. C. Thermal ecophysiology of Laurencia pacifica and Laurencia nidifica (Ceramiales, Rhodophyta) from tropical and warm-temperate regions Journal of Phycology 43  ISI:000248544800007 (4):686-692	Journal Article
2007	Padilla-Gamiño, J. L.., Carpenter, R. C. Seasonal acclimatization of Asparagopsis taxiformis (Rhodophyta) from different biogeographic regions Limnology and Oceanography 52  ISI:000245145200031 (2):833-842	Journal Article
2007	Penin, L., Adjeroud, M., Schrimm, M., Lenihan, H. S. High spatial variability in coral bleaching around Moorea (French Polynesia): patterns across locations and water depths Comptes Rendus Biologies 330  ISI:000244924400009 (2):171-181	Journal Article
2007	Schmitt, R. J., Holbrook, S. J. The scale and cause of spatial heterogeneity in strength of temporal density dependence Ecology 88  ISI:000246369900019 (5):1241-1249	Journal Article
2007	Schmitt, R. J., Holbrook, S. J. Predicting the magnitude of temporal variation in young-of-year class strength of surfperch (Teleostei : Embiotocidae) Raffles Bulletin of Zoology (Supplement) 14 ISI:000244303400020 161-166	Journal Article
2007	Stewart, H. L., Payri, C. E., Koehl, M. A. R. The role of buoyancy in mitigating reduced light in macroalgal aggregations Journal of Experimental Marine Biology and Ecology 343  ISI:000245262200002 (1):11-20	Journal Article
2007	Talmage, S. C. Variation in abundance and carbon allocation for Sargassum mangarevense across gradients in herbivory and hydrodynamic exposure in Moorea, French Polynesia. Department of Biology, CSU Northridge M.S. Thesis 121 Pp.	Thesis or Dissertation
2007	Washburn, L. Berkeley, CA Coastal Currents University of California Encyclopedia of Tidepools and Rocky Shores 168-172	Book Chapter
2006	Brooks, A. J. Australian Institute for Marine Sciences, Townsville, Australia Digital Moorea: The implementation of a wireless sensor network for the monitoring of coral reefs.  Workshop on the Adoption of Sensor Networks by Coastal Managers   11-16	Conference Proceeding
2006	Bruno, J. F., Lee, S. C., Kertesz, J. S., Carpenter, R. C., Long, Z. T., Duffy, J. E. Partitioning the effects of algal species identity and richness on benthic marine primary production Oikos 115  ISI:000240998300017 (1):170-178	Journal Article
2006	Carpenter, R., Edmunds, P. Local and regional scale recovery of Diadema promotes recruitment of scleractinian corals Ecology Letters 9 271-280	Journal Article
2006	Holbrook, S. J., Brooks, A. J., Schmitt, R. J. Okinawa, Japan Relationships between live coral cover and reef fishes: implications for predicting effects of environmental disturbances Proceedings of the 10th International Coral Reef Symposium   241-249	Conference Proceeding
2006	Kane, C. Habitat preference, social behavior and patterns of abundance in the coral reef fish Paracirrhites arcatus. Department of Ecology, Evolution and Marine Biology, UC Santa Barbara M.A. Thesis 52 Pp.	Thesis or Dissertation
2006	Ridgway, T., Gates, R. D. Why are there so few genetic markers available for coral population analyses? Symbiosis 41  ISI:000237345200001 (1):1-7	Journal Article
2006	Schmitt, R. J., Holbrook, S. J. Okinawa, Japan Developmental delays, recruitment storage and adult attrition rates in local populations of a tropical damselfish Proceedings of the 10th International Coral Reef Symposium   232-240	Conference Proceeding
2006	Stewart, H. L. Morphological variation and phenotypic plasticity of buoyancy in the macroalga Turbinaria ornata across a barrier reef Marine Biology 149  ISI:000238683900003 (4):721-730	Journal Article
2006	Stewart, H. L. Hydrodynamic consequences of flexural stiffness and buoyancy for seaweeds: a study using physical models Journal of Experimental Biology 209  ISI:000237643700025 (11):2170-2181	Journal Article
2006	Stewart, H. L. Ontogenetic changes in buoyancy, breaking strength, extensibility, and reproductive investment in a drifting macroalga Turbinaria ornata (Phaeophyta) Journal of Phycology 42  ISI:000235220500005 (1):43-50	Journal Article
2006	Stewart, H. L., Holbrook, S. J., Schmitt, R. J., Brooks, A. J. Symbiotic crabs maintain coral health by clearing sediments Coral Reefs 25  ISI:000242058400017 (4):609-615	Journal Article
2006	Thompson, A. R., Nisbet, R. M., Schmitt, R. J. Dynamics of mutualist populations that are demographically open Journal of Animal Ecology 75  ISI:000241158600002 (6):1239-1251	Journal Article
2006	Van Oppen, M. J. H., Gates, R. D. Conservation genetics and the resilience of reef-building corals Molecular Ecology 15  ISI:000241388800001 (13):3863-3883	Journal Article
2005	Elahi, R. Effects of age and size on the growth and physiology of scleractinian corals Department of Biology, CSU Northridge M.S. Thesis 96 Pp.	Thesis or Dissertation
2005	Holbrook, S. J., Schmitt, R. J. Growth, reproduction and survival of a tropical sea anemone (Actiniaria): benefits of hosting anemonefish Coral Reefs 24 ISI:000227742400010 (1):67-73	Journal Article
2005	Lape, J. C. P. Factors influencing the quality of a refuge for coral reef fish: effects of microhabitat setting, size and inhabitants. Department of Ecology, Evolution and Marine Biology, UC Santa Barbara M.A. Thesis	Thesis or Dissertation
2005	Maritorena, S., Siegel, D. A. Consistent merging of satellite ocean color data sets using a bio-optical model Remote Sensing of Environment 94  ISI:000227046700001 (4):429-440	Journal Article
2005	Siegel, D. A., Maritorena, S., Nelson, N. B., Behrenfeld, M. J. Independence and interdependencies among global ocean color properties: Reassessing the bio-optical assumption Journal of Geophysical Research-Oceans 110  ISI:000230918600001	Journal Article
2005	Siegel, D. A., Maritorena, S., Nelson, N. B., Behrenfeld, M. J., McClain, C. R. Colored dissolved organic matter and its influence on the satellite-based characterization of the ocean biosphere Geophysical Research Letters 32  ISI:000233105000007	Journal Article
2005	Thompson, A. R. Dynamics of demographically open mutualists: immigration, intraspecific competition, and predation impact goby populations Oecologia 143  ISI:000227369700006 (1):61-69	Journal Article
	Extreme rainfall events pulse nutrients and sediments from terrestrial nearshore coastal communities: a case study from French Polynesia.	Journal Article