U Hawaii / HIMB

Hawaii Institute of Marine Biology
PO Box 1346
Kaneohe, HI 96744

Research Area

Population genetics of coral and symbionts

Ruth Gates - Publications

Year Citations Publication Type Links
In Press Scale dependence of coral reef oases and their environmental correlates. Journal Article
2019 Ruth D. Gates (1962-2018). Journal Article
2019 Global biogeography of coral recruitment: tropical decline and subtropical increase Journal Article
2018 A framework for identifying and characterizing coral-reef "oases" against a backdrop of degradation. Journal Article
2017 Shifting paradigms in restoration of the world’s coral reefs. Journal Article
2017 Correspondence of coral holobiont metabolome with symbiotic bacteria, archaea and Symbiodinium communities. Journal Article
2017 Effects of temperature and pCO2 on population regualtion of Symbiodinium spp. in a tropical reef coral. Journal Article
2017 A dynamic bioenergetic model for coral-Symbiodinium symbioses and coral bleaching as an alternate stable state. Journal Article
2017 The vulnerability and resilience of reef building corals. Journal Article
2017 The Coral Trait Database, a curated database of trait information for coral species from the global oceans. Journal Article
2016 The Coral Traits Database, a curated database of trait information for coral species from the global oceans Journal Article
2016 Simulating social-ecological systems: the Island Digital Ecosytem Avatars (IDEA) consortium. Journal Article
2016 Ocean acidification influences DNA methylation and phenotypic plasticity in environmentally susceptible corals Journal Article
2016 Corals' microbial sentinels Journal Article
2016 Metabolomic signatures of increases in temperature and ocean acidification from the reef-building coral, Pocillopora damicornis Journal Article
2016 Ocean acidification influences DNA methylation and phenotypic plasticity in environmentally susceptible corals Journal Article
2015 Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions. Journal Article
2015 Geographic variation in long-term trajectories of change in coral recruitment: a global-to-local perspective. Journal Article
2015 Species-specific differences in thermal tolerance may define susceptibility to intracellular acidosis in reef corals. Journal Article
2015 Building coral reef resilience through assisted evolution. Journal Article
2015 Fluorescent proteins in dominant mesophotic reef-building corals. Journal Article
2014 Persistence and change in community composition of reef corals through past, present, and future climates Journal Article
2014 Sedimentation and the reproductive biology of the Hawaiian reef-building coral Montipora capitata Journal Article
2014 Application of 1H-NMR metabolomic profiling for reef-building corals. Journal Article
2014 Molecular characterization of symbiotic algae (Symbiodinium spp.) in soritid foraminifera (Sorites orbiculus) and a scleractinian coral (Orbicella annularis) from St John, US Virgin Islands Journal Article
2014 Intracellular pH and its response to CO2-driven seawater acidification in symbiotic versus non-symbiotic coral cells. Journal Article
2014 Evaluating the causal basis of ecological success within the scleractinia: an integral projection model approach Journal Article
2014 Long-term changes in Symbiodinium communities in Orbicella annularis in St. John, US Virgin Islands Journal Article
2014 Multi-gene analysis of Symbiodinium dinoflagellates: a perspective on rarity, symbiosis, and evolution. Journal Article
2013 The endosymbiotic dinoflagellates (Symbiodinium sp.) of corals are parasites and mutualists. Journal Article
2013 The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress. Journal Article
2013 Assessing fertilization success of the coral Montipora capitata under copper exposure: does the night of spawning matter? Journal Article
2013 Symbiotic specificity, association patterns, and function determine community responses to global changes: Defining critical research areas for coral-Symbiodinium symbioses. Journal Article
2013 The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperatures and pCO2. Journal Article
2013 Observing the coral symbiome using laser scanning confocal microscopy. Journal Article
2013 Are all eggs created equal? A case study from the Hawaiian reef-building coral Montipora capitata. Journal Article
2012 Phenotypic plasticity of the coral Porites rus: acclimatization responses to a turbid environment. Journal Article
2012 Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium. Journal Article
2012 Molecular delineation of species in the coral holobiont. Book Chapter
2012 GeoSymbio: A hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses. Journal Article
2012 Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals. Journal Article
2012 Photophysiological consequences of vertical stratification of Symbiodinium in tissue of the coral Porites lutea Journal Article
2012 From parent to gamete: vertical transmission of Symbiodinium (Dinophyceae) ITS2 sequence assemblages in the reef building coral Montipora capitata. Journal Article
2012 Transmission mode predicts specificity and interaction patterns in coral-Symbiodinium networks. Journal Article
2012 Cultivating endosymbionts-host environmental mimics support the survival of Symbiodinium C15 ex hospite. Journal Article
2011 The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals. Journal Article
2011 The effect of a sublethal temperature elevation on the structure of bacterial communities associated with the coral Porites compressa. Journal Article
2011 Formation and structural organization of the egg-sperm bundle of the scleractinian coral Montipora capitata. Journal Article
2011 Rapid development of a hybrid web application for synthesis science of Symbiodinium with Google Apps. Conference Proceeding
2011 Variation in Symbiodinium ITS2 sequence assemblages among coral colonies. Journal Article
2011 Clade D Symbiodinium in scleractinian corals: a “nugget” of hope, a selfish opportunist, an ominous sign, or all of the above? Journal Article
2010 The effect of ocean acidification on calcifying organisms in marine ecosystems: an organism to ecosystem perspective. Journal Article
2010 Evaluating the temporal stability of stress-activated protein kinase and cytoskeleton gene expression in the Pacific reef corals Pocillopora damicornis and Seritopora hystrix. Journal Article
2010 Photoacclimatization by the coral Montastraea cavernosa in the mesophotic zone: light, food, and genetics Journal Article
2010 Protein expression and genetic structure of the coral Porites lobata in an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity Journal Article
2010 Comparison of endosymbiotic and free-living Symbiodinium (Dinophyceae) diversity in a Hawaiian reef environment Journal Article
2010 Skeletal Eroding Band in Hawaiian corals Journal Article
2010 The future of coral reefs - A microbial perspective Journal Article
2010 Betaines and dimethylsulfoniopropionate as major osmolytes in Cnidaria with endosymbiotic dinoflagellates Journal Article
2010 A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i Journal Article
2010 The effects of substratum type on the growth, mortality, and phytophysiology of juvenile corals in St. John, US Virgin Islands Journal Article
2009 Specificity in communities of Symbiodinium in corals from Johnston Atoll Journal Article
2009 Gene expression normalization in a dual-compartment system: a real-time quantitative polymerase chain reaction protocol for symbiotic anthozoans Journal Article
2009 Coral-virus interactions: A double-edged sword? Journal Article
2009 Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris Journal Article
2009 Diazotrophic bacteria associated with Hawaiian Montipora corals: Diversity and abundance in correlation with symbiotic dinoflagellates Journal Article
2009 Response of two species of Indo-Pacific corals, Porites cylindrica and Stylophora pistillata, to short-term thermal stress: The host does matter in determining the tolerance of corals to bleaching Journal Article
2009 Red Fluorescent Protein Responsible for Pigmentation in Trematode-Infected Porites compressa Tissues Journal Article
2009 Assessment of metals and a metalloid in sediments from Hawaiian coral reef ecosystems. Journal Article
2008 Functional diversity in coral-dinoflagellate symbiosis Journal Article
2008 Acclimatization in tropical reef corals Journal Article
2008 Diversity in populations of free-living Symbiodinium from a Caribbean and Pacific reef Journal Article
2008 Vectored introductions of marine endosymbiotic dinoflagellates into Hawaii Journal Article
2007 Len Muscatine (1932-2007) and his contributions to the understanding of algal-invertebrate endosymbiosis Journal Article
2007 The hologenome theory disregards the coral holobiont Journal Article
2007 Visibly healthy corals exhibit variable pigment concentrations and symbiont phenotypes Journal Article
2007 Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data Journal Article
2007 Recognizing diversity in coral symbiotic dinoflagellate communities Journal Article
2007 Osmoregulation in anthozoan-dinoflagellate symbiosis Journal Article
2006 Why are there so few genetic markers available for coral population analyses? Journal Article
2006 Conservation genetics and the resilience of reef-building corals Journal Article

Ruth Gates - Datasets