808 236-7420
rgates@hawaii.edu
Personal Website
U Hawaii / HIMB

Hawaii Institute of Marine Biology
PO Box 1346
Kaneohe, HI 96744

Research Area

Population genetics of coral and symbionts

Ruth Gates - Publications

Year Citations Publication Type Links
In Press Scale dependence of coral reef oases and their environmental correlates. Journal Article PDF
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2019 Ruth D. Gates (1962-2018). Journal Article PDF
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2019 Global biogeography of coral recruitment: tropical decline and subtropical increase Journal Article PDF
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2018 A framework for identifying and characterizing coral-reef "oases" against a backdrop of degradation. Journal Article PDF
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2017 Shifting paradigms in restoration of the world’s coral reefs. Journal Article PDF
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2017 Correspondence of coral holobiont metabolome with symbiotic bacteria, archaea and Symbiodinium communities. Journal Article PDF
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2017 Effects of temperature and pCO2 on population regualtion of Symbiodinium spp. in a tropical reef coral. Journal Article PDF
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2017 A dynamic bioenergetic model for coral-Symbiodinium symbioses and coral bleaching as an alternate stable state. Journal Article PDF
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2017 The vulnerability and resilience of reef building corals. Journal Article PDF
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2017 The Coral Trait Database, a curated database of trait information for coral species from the global oceans. Journal Article PDF
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2016 Ocean acidification influences DNA methylation and phenotypic plasticity in environmentally susceptible corals Journal Article PDF
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2016 The Coral Traits Database, a curated database of trait information for coral species from the global oceans Journal Article PDF
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2016 Simulating social-ecological systems: the Island Digital Ecosytem Avatars (IDEA) consortium. Journal Article PDF
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2016 Ocean acidification influences DNA methylation and phenotypic plasticity in environmentally susceptible corals Journal Article PDF
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2016 Corals' microbial sentinels Journal Article PDF
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2016 Metabolomic signatures of increases in temperature and ocean acidification from the reef-building coral, Pocillopora damicornis Journal Article PDF
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2015 Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions. Journal Article PDF
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2015 Geographic variation in long-term trajectories of change in coral recruitment: a global-to-local perspective. Journal Article PDF
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2015 Species-specific differences in thermal tolerance may define susceptibility to intracellular acidosis in reef corals. Journal Article PDF
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2015 Building coral reef resilience through assisted evolution. Journal Article PDF
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2015 Fluorescent proteins in dominant mesophotic reef-building corals. Journal Article PDF
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2014 Persistence and change in community composition of reef corals through past, present, and future climates Journal Article PDF
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2014 Sedimentation and the reproductive biology of the Hawaiian reef-building coral Montipora capitata Journal Article PDF
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2014 Application of 1H-NMR metabolomic profiling for reef-building corals. Journal Article PDF
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2014 Molecular characterization of symbiotic algae (Symbiodinium spp.) in soritid foraminifera (Sorites orbiculus) and a scleractinian coral (Orbicella annularis) from St John, US Virgin Islands Journal Article PDF
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2014 Intracellular pH and its response to CO2-driven seawater acidification in symbiotic versus non-symbiotic coral cells. Journal Article PDF
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2014 Evaluating the causal basis of ecological success within the scleractinia: an integral projection model approach Journal Article PDF
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2014 Long-term changes in Symbiodinium communities in Orbicella annularis in St. John, US Virgin Islands Journal Article PDF
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2014 Multi-gene analysis of Symbiodinium dinoflagellates: a perspective on rarity, symbiosis, and evolution. Journal Article PDF
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2013 The endosymbiotic dinoflagellates (Symbiodinium sp.) of corals are parasites and mutualists. Journal Article PDF
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2013 The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress. Journal Article PDF
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2013 Assessing fertilization success of the coral Montipora capitata under copper exposure: does the night of spawning matter? Journal Article PDF
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2013 Symbiotic specificity, association patterns, and function determine community responses to global changes: Defining critical research areas for coral-Symbiodinium symbioses. Journal Article PDF
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2013 The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperatures and pCO2. Journal Article PDF
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2013 Observing the coral symbiome using laser scanning confocal microscopy. Journal Article PDF
2013 Are all eggs created equal? A case study from the Hawaiian reef-building coral Montipora capitata. Journal Article PDF
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2012 Phenotypic plasticity of the coral Porites rus: acclimatization responses to a turbid environment. Journal Article PDF
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2012 Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium. Journal Article PDF
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2012 Molecular delineation of species in the coral holobiont. Book Chapter PDF
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2012 GeoSymbio: A hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses. Journal Article PDF
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2012 Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals. Journal Article PDF
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2012 Photophysiological consequences of vertical stratification of Symbiodinium in tissue of the coral Porites lutea Journal Article PDF
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2012 From parent to gamete: vertical transmission of Symbiodinium (Dinophyceae) ITS2 sequence assemblages in the reef building coral Montipora capitata. Journal Article PDF
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2012 Transmission mode predicts specificity and interaction patterns in coral-Symbiodinium networks. Journal Article PDF
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2012 Cultivating endosymbionts-host environmental mimics support the survival of Symbiodinium C15 ex hospite. Journal Article PDF
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2011 Clade D Symbiodinium in scleractinian corals: a “nugget” of hope, a selfish opportunist, an ominous sign, or all of the above? Journal Article PDF
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2011 The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals. Journal Article PDF
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2011 The effect of a sublethal temperature elevation on the structure of bacterial communities associated with the coral Porites compressa. Journal Article PDF
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2011 Formation and structural organization of the egg-sperm bundle of the scleractinian coral Montipora capitata. Journal Article PDF
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2011 Rapid development of a hybrid web application for synthesis science of Symbiodinium with Google Apps. Conference Proceeding PDF
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2011 Variation in Symbiodinium ITS2 sequence assemblages among coral colonies. Journal Article PDF
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2010 The effect of ocean acidification on calcifying organisms in marine ecosystems: an organism to ecosystem perspective. Journal Article PDF
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2010 Evaluating the temporal stability of stress-activated protein kinase and cytoskeleton gene expression in the Pacific reef corals Pocillopora damicornis and Seritopora hystrix. Journal Article PDF
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2010 Photoacclimatization by the coral Montastraea cavernosa in the mesophotic zone: light, food, and genetics Journal Article PDF
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2010 Protein expression and genetic structure of the coral Porites lobata in an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity Journal Article PDF
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2010 Comparison of endosymbiotic and free-living Symbiodinium (Dinophyceae) diversity in a Hawaiian reef environment Journal Article PDF
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2010 Skeletal Eroding Band in Hawaiian corals Journal Article PDF
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2010 The future of coral reefs - A microbial perspective Journal Article PDF
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2010 Betaines and dimethylsulfoniopropionate as major osmolytes in Cnidaria with endosymbiotic dinoflagellates Journal Article PDF
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2010 A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i Journal Article PDF
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2010 The effects of substratum type on the growth, mortality, and phytophysiology of juvenile corals in St. John, US Virgin Islands Journal Article PDF
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2009 Specificity in communities of Symbiodinium in corals from Johnston Atoll Journal Article PDF
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2009 Gene expression normalization in a dual-compartment system: a real-time quantitative polymerase chain reaction protocol for symbiotic anthozoans Journal Article PDF
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2009 Coral-virus interactions: A double-edged sword? Journal Article PDF
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2009 Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris Journal Article PDF
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2009 Diazotrophic bacteria associated with Hawaiian Montipora corals: Diversity and abundance in correlation with symbiotic dinoflagellates Journal Article PDF
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2009 Response of two species of Indo-Pacific corals, Porites cylindrica and Stylophora pistillata, to short-term thermal stress: The host does matter in determining the tolerance of corals to bleaching Journal Article PDF
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2009 Red Fluorescent Protein Responsible for Pigmentation in Trematode-Infected Porites compressa Tissues Journal Article PDF
2009 Assessment of metals and a metalloid in sediments from Hawaiian coral reef ecosystems. Journal Article PDF
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2008 Functional diversity in coral-dinoflagellate symbiosis Journal Article PDF
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2008 Acclimatization in tropical reef corals Journal Article PDF
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2008 Diversity in populations of free-living Symbiodinium from a Caribbean and Pacific reef Journal Article PDF
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2008 Vectored introductions of marine endosymbiotic dinoflagellates into Hawaii Journal Article PDF
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2007 Osmoregulation in anthozoan-dinoflagellate symbiosis Journal Article PDF
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2007 Len Muscatine (1932-2007) and his contributions to the understanding of algal-invertebrate endosymbiosis Journal Article PDF
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2007 The hologenome theory disregards the coral holobiont Journal Article PDF
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2007 Visibly healthy corals exhibit variable pigment concentrations and symbiont phenotypes Journal Article PDF
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2007 Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data Journal Article PDF
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2007 Recognizing diversity in coral symbiotic dinoflagellate communities Journal Article PDF
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2006 Why are there so few genetic markers available for coral population analyses? Journal Article PDF
2006 Conservation genetics and the resilience of reef-building corals Journal Article PDF
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Ruth Gates - Datasets